Guide to the Human Genome
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Name: PRPF40A Sequence: fasta or formatted (930aa) NCBI GI: 151301228
Description:

formin binding protein 3

Referenced in:

Additional Brain Proteins
Cytoskeleton
WW Domain

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         78          13
 C cysteine            0.5          5           1
 D aspartate           4.8         45           4
 E glutamate          11.6        108           5
 F phenylalanine       2.6         24           2
 G glycine             3.9         36           2
 H histidine           2.8         26           3
 I isoleucine          2.9         27           2
 K lysine             10.9        101           3
 L leucine             5.4         50           2
 M methionine          4.6         43           3
 N asparagine          3.3         31           1
 P proline             4.6         43           2
 Q glutamine           4.1         38           2
 R arginine            5.8         54           3
 S serine             10.3         96           3
 T threonine           6.3         59           3
 V valine              3.5         33           2
 W tryptophan          1.3         12           1
 Y tyrosine            2.3         21           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   formin binding protein 3 
PRPF40B               0.512   Huntingtin interacting protein C isoform 1 
PRPF40B               0.502   Huntingtin interacting protein C isoform 2 
TCERG1                0.057   transcription elongation regulator 1 isoform 2 [Homo...
TCERG1                0.055   transcription elongation regulator 1 isoform 1 [Homo...
LOC100133599          0.030   PREDICTED: hypothetical protein 
PRPF38B               0.030   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
TCERG1L               0.027   transcription elongation regulator 1-like 
SFRS12                0.027   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.027   splicing factor, arginine/serine-rich 12 isoform b [...
FAM133A               0.026   hypothetical protein LOC286499 
LOC100286959          0.026   PREDICTED: hypothetical protein XP_002343921 
RBM25                 0.025   RNA binding motif protein 25 
LOC100133599          0.025   PREDICTED: hypothetical protein 
RSRC2                 0.024   arginine/serine-rich coiled-coil 2 isoform a 
SFRS4                 0.024   splicing factor, arginine/serine-rich 4 
ANKRD12               0.024   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.024   ankyrin repeat domain 12 isoform 1 
ZC3H13                0.024   zinc finger CCCH-type containing 13 
LUC7L2                0.023   LUC7-like 2 
ZRANB2                0.022   zinc finger protein 265 isoform 1 
CCDC55                0.022   coiled-coil domain containing 55 isoform 1 
FAM133B               0.022   hypothetical protein LOC257415 isoform 2 
FAM133B               0.022   hypothetical protein LOC257415 isoform 1 
LOC100134067          0.022   PREDICTED: hypothetical protein 
PPIG                  0.022   peptidylprolyl isomerase G 
SON                   0.022   SON DNA-binding protein isoform F 
SON                   0.022   SON DNA-binding protein isoform B 
DDX46                 0.022   DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 
CROP                  0.021   cisplatin resistance-associated overexpressed protei...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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