Guide to the Human Genome
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Name: LOC100131261 Sequence: fasta or formatted (139aa) NCBI GI: 169161132
Description:

PREDICTED: hypothetical protein LOC100131261

Not currently referenced in the text

Other entries for this name:
alt prot {139aa} PREDICTED: similar to hCG1728885
alt prot {139aa} PREDICTED: similar to hCG1728885
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0          7           1
 C cysteine            0.0          0           0
 D aspartate           0.7          1           1
 E glutamate           3.6          5           1
 F phenylalanine       3.6          5           1
 G glycine             6.5          9           2
 H histidine           2.2          3           1
 I isoleucine          2.2          3           1
 K lysine             12.2         17           3
 L leucine             5.8          8           2
 M methionine          2.9          4           1
 N asparagine         10.1         14           2
 P proline             8.6         12           2
 Q glutamine           9.4         13           3
 R arginine            3.6          5           1
 S serine             12.2         17           2
 T threonine           2.2          3           1
 V valine              5.0          7           1
 W tryptophan          2.2          3           1
 Y tyrosine            2.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC100131261 
LOC100131261          0.981   PREDICTED: similar to hCG1728885 
LOC100131261          0.981   PREDICTED: similar to hCG1728885 
PNRC2                 0.958   proline-rich nuclear receptor coactivator 2 
PNRC1                 0.242   proline-rich nuclear receptor coactivator 1 
SMN2                  0.030   survival of motor neuron 2, centromeric isoform d [H...
SMN2                  0.030   survival of motor neuron 2, centromeric isoform a [H...
SMN1                  0.030   survival of motor neuron 1, telomeric isoform d [Homo...
GLIS3                 0.030   GLIS family zinc finger 3 isoform a 
GLIS3                 0.030   GLIS family zinc finger 3 isoform b 
N4BP2L2               0.030   phosphonoformate immuno-associated protein 5 isofor...
FBRSL1                0.030   fibrosin-like 1 
LMOD2                 0.027   leiomodin 2 (cardiac) 
PRPF38B               0.023   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
TOP1                  0.023   DNA topoisomerase I 
MBTD1                 0.023   mbt domain containing 1 
C6orf222              0.019   hypothetical protein LOC389384 
CHD9                  0.019   chromodomain helicase DNA binding protein 9 
FGFR1OP2              0.019   FGFR1 oncogene partner 2 
ARID1B                0.019   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
FOXO4                 0.019   forkhead box O4 
FAM178A               0.019   hypothetical protein LOC55719 isoform 1 
FAM178A               0.019   hypothetical protein LOC55719 isoform 2 
MAP7D1                0.019   MAP7 domain containing 1 
FYB                   0.015   FYN binding protein (FYB-120/130) isoform 2 
FYB                   0.015   FYN binding protein (FYB-120/130) isoform 1 
CEBPD                 0.015   CCAAT/enhancer binding protein delta 
TRDN                  0.015   triadin 
PRPF40A               0.015   formin binding protein 3 
PUM1                  0.011   pumilio 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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