Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100131261 Sequence: fasta or formatted (139aa) NCBI GI: 169160897
Description:

PREDICTED: similar to hCG1728885

Not currently referenced in the text

Other entries for this name:
alt prot {139aa} PREDICTED: hypothetical protein LOC100131261
alt mRNA {139aa} PREDICTED: similar to hCG1728885
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0          7           1
 C cysteine            0.0          0           0
 D aspartate           0.7          1           1
 E glutamate           3.6          5           1
 F phenylalanine       3.6          5           1
 G glycine             7.2         10           3
 H histidine           2.2          3           1
 I isoleucine          2.2          3           1
 K lysine             11.5         16           3
 L leucine             5.8          8           2
 M methionine          2.9          4           1
 N asparagine         10.8         15           2
 P proline             8.6         12           2
 Q glutamine           9.4         13           3
 R arginine            2.9          4           1
 S serine             12.2         17           2
 T threonine           2.2          3           1
 V valine              5.0          7           1
 W tryptophan          2.2          3           1
 Y tyrosine            2.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1728885 
LOC100131261          1.000   PREDICTED: similar to hCG1728885 
LOC100131261          0.977   PREDICTED: hypothetical protein LOC100131261 
PNRC2                 0.977   proline-rich nuclear receptor coactivator 2 
PNRC1                 0.234   proline-rich nuclear receptor coactivator 1 
SMN2                  0.034   survival of motor neuron 2, centromeric isoform d [H...
SMN2                  0.034   survival of motor neuron 2, centromeric isoform a [H...
SMN1                  0.034   survival of motor neuron 1, telomeric isoform d [Homo...
GLIS3                 0.030   GLIS family zinc finger 3 isoform a 
GLIS3                 0.030   GLIS family zinc finger 3 isoform b 
LMOD2                 0.030   leiomodin 2 (cardiac) 
TOP1                  0.026   DNA topoisomerase I 
FBRSL1                0.026   fibrosin-like 1 
PRPF38B               0.023   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
MBTD1                 0.023   mbt domain containing 1 
CHD9                  0.019   chromodomain helicase DNA binding protein 9 
N4BP2L2               0.019   phosphonoformate immuno-associated protein 5 isofor...
FGFR1OP2              0.019   FGFR1 oncogene partner 2 
C6orf222              0.019   hypothetical protein LOC389384 
FAM178A               0.015   hypothetical protein LOC55719 isoform 1 
FAM178A               0.015   hypothetical protein LOC55719 isoform 2 
PUM1                  0.015   pumilio 1 isoform 2 
PUM1                  0.015   pumilio 1 isoform 1 
APC                   0.015   adenomatous polyposis coli 
APC                   0.015   adenomatous polyposis coli 
APC                   0.015   adenomatous polyposis coli 
FYB                   0.015   FYN binding protein (FYB-120/130) isoform 2 
FYB                   0.015   FYN binding protein (FYB-120/130) isoform 1 
TRDN                  0.015   triadin 
PRPF40A               0.015   formin binding protein 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press