Guide to the Human Genome
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Name: MBTD1 Sequence: fasta or formatted (628aa) NCBI GI: 158508476
Description:

mbt domain containing 1

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         41           2
 C cysteine            3.2         20           1
 D aspartate           5.4         34           2
 E glutamate           6.1         38           3
 F phenylalanine       4.5         28           1
 G glycine             6.7         42           2
 H histidine           2.5         16           2
 I isoleucine          4.8         30           2
 K lysine              7.6         48           3
 L leucine             7.0         44           2
 M methionine          2.4         15           1
 N asparagine          3.5         22           2
 P proline             5.7         36           2
 Q glutamine           4.1         26           2
 R arginine            4.3         27           1
 S serine              8.9         56           6
 T threonine           4.8         30           2
 V valine              6.2         39           2
 W tryptophan          2.2         14           1
 Y tyrosine            3.5         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   mbt domain containing 1 
L3MBTL2               0.528   l(3)mbt-like 2 
SFMBT2                0.156   Scm-like with four mbt domains 2 
SFMBT1                0.147   Scm-like with four mbt domains 1 
SFMBT1                0.147   Scm-like with four mbt domains 1 
SFMBT1                0.147   Scm-like with four mbt domains 1 
L3MBTL                0.125   l(3)mbt-like isoform I 
L3MBTL                0.125   l(3)mbt-like isoform II 
L3MBTL3               0.122   l(3)mbt-like 3 isoform b 
L3MBTL3               0.122   l(3)mbt-like 3 isoform a 
L3MBTL4               0.118   l(3)mbt-like 4 
SCML2                 0.087   sex comb on midleg-like 2 
SCMH1                 0.082   sex comb on midleg 1 isoform 1 
SCMH1                 0.081   sex comb on midleg 1 isoform 2 
PHC3                  0.014   polyhomeotic like 3 
PHF20L1               0.008   PHD finger protein 20-like 1 isoform 3 
PHF20L1               0.008   PHD finger protein 20-like 1 isoform 2 
PHF20L1               0.008   PHD finger protein 20-like 1 isoform 1 
PHC1                  0.007   polyhomeotic 1-like 
PHC2                  0.006   polyhomeotic-like 2 isoform b 
PHC2                  0.006   polyhomeotic-like 2 isoform a 
PHF20                 0.006   PHD finger protein 20 
PEX1                  0.005   peroxin1 
THAP11                0.005   THAP domain containing 11 
LOC100131261          0.005   PREDICTED: similar to hCG1728885 
LOC128322             0.005   PREDICTED: similar to nuclear transport factor 2 [H...
LOC100131261          0.005   PREDICTED: similar to hCG1728885 
LOC100131261          0.005   PREDICTED: hypothetical protein LOC100131261 
MORF4L1               0.004   MORF-related gene 15 isoform 1 
NCOA6                 0.004   nuclear receptor coactivator 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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