Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 11072101
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|11072101 rhomboid domain containing 3 [Homo sapiens]
(386 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11072101 rhomboid domain containing 3 [Homo sapiens] 788 0.0
gi|94818790 rhomboid domain containing 2 isoform a [Homo sapiens] 61 2e-09
gi|112421108 capicua homolog [Homo sapiens] 40 0.005
gi|109637784 GLIS family zinc finger 3 isoform a [Homo sapiens] 36 0.067
gi|109637782 GLIS family zinc finger 3 isoform b [Homo sapiens] 36 0.067
gi|115511028 transmembrane 4 L six family member 19 [Homo sapiens] 35 0.088
gi|41152107 ubiquitin-like 7 [Homo sapiens] 35 0.11
gi|14249682 ubiquitin-like 7 [Homo sapiens] 35 0.11
gi|7706117 solute carrier family 15, member 3 [Homo sapiens] 35 0.15
gi|148833506 obscurin, cytoskeletal calmodulin and titin-interac... 34 0.25
gi|32307128 nuclear receptor coactivator 6 [Homo sapiens] 34 0.25
gi|148539835 dystroglycan 1 preproprotein [Homo sapiens] 33 0.33
gi|24797153 faciogenital dysplasia protein [Homo sapiens] 33 0.33
gi|94818879 rhomboid domain containing 2 isoform b [Homo sapiens] 33 0.33
gi|19924103 synapsin II isoform IIa [Homo sapiens] 33 0.43
gi|19924101 synapsin II isoform IIb [Homo sapiens] 33 0.43
gi|119220575 mediator complex subunit 24 isoform 2 [Homo sapiens] 33 0.43
gi|41281496 mediator complex subunit 24 isoform 1 [Homo sapiens] 33 0.43
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 33 0.57
gi|166706868 synaptopodin 2-like isoform a [Homo sapiens] 33 0.57
gi|50301232 synaptopodin 2-like isoform b [Homo sapiens] 33 0.57
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] 32 0.74
gi|21322252 androgen receptor isoform 1 [Homo sapiens] 32 0.74
gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo sa... 32 0.74
gi|238859557 regulatory factor X1 [Homo sapiens] 32 0.97
gi|239753316 PREDICTED: similar to Rho guanine nucleotide exchan... 32 0.97
gi|217416332 trinucleotide repeat containing 6C isoform 1 [Homo ... 32 0.97
gi|33413425 trinucleotide repeat containing 6C isoform 2 [Homo s... 32 0.97
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 32 0.97
gi|118572599 formin homology 2 domain containing 1 [Homo sapiens] 32 0.97
>gi|11072101 rhomboid domain containing 3 [Homo sapiens]
Length = 386
Score = 788 bits (2035), Expect = 0.0
Identities = 386/386 (100%), Positives = 386/386 (100%)
Query: 1 MHARGPHGQLSPALPLASSVLMLLMSTLWLVGAGPGLVLAPELLLDPWQVHRLLTHALGH 60
MHARGPHGQLSPALPLASSVLMLLMSTLWLVGAGPGLVLAPELLLDPWQVHRLLTHALGH
Sbjct: 1 MHARGPHGQLSPALPLASSVLMLLMSTLWLVGAGPGLVLAPELLLDPWQVHRLLTHALGH 60
Query: 61 TALPGLLLSLLLLPTVGWQQECHLGTLRFLHASALLALASGLLAVLLAGLGLSSAAGSCG 120
TALPGLLLSLLLLPTVGWQQECHLGTLRFLHASALLALASGLLAVLLAGLGLSSAAGSCG
Sbjct: 61 TALPGLLLSLLLLPTVGWQQECHLGTLRFLHASALLALASGLLAVLLAGLGLSSAAGSCG 120
Query: 121 YMPVHLAMLAGEGHRPRRPRGALPPWLSPWLLLALTPLLSSEPPFLQLLCGLLAGLAYAA 180
YMPVHLAMLAGEGHRPRRPRGALPPWLSPWLLLALTPLLSSEPPFLQLLCGLLAGLAYAA
Sbjct: 121 YMPVHLAMLAGEGHRPRRPRGALPPWLSPWLLLALTPLLSSEPPFLQLLCGLLAGLAYAA 180
Query: 181 GAFRWLEPSERRLQVLQEGVLCRTLAGCWPLRLLATPGSLAELPVTHPAGVRPPIPGPPY 240
GAFRWLEPSERRLQVLQEGVLCRTLAGCWPLRLLATPGSLAELPVTHPAGVRPPIPGPPY
Sbjct: 181 GAFRWLEPSERRLQVLQEGVLCRTLAGCWPLRLLATPGSLAELPVTHPAGVRPPIPGPPY 240
Query: 241 VASPDLWSHWEDSALPPPSLRPVQPTWEGSSEAGLDWAGASFSPGTPMWAALDEQMLQEG 300
VASPDLWSHWEDSALPPPSLRPVQPTWEGSSEAGLDWAGASFSPGTPMWAALDEQMLQEG
Sbjct: 241 VASPDLWSHWEDSALPPPSLRPVQPTWEGSSEAGLDWAGASFSPGTPMWAALDEQMLQEG 300
Query: 301 IQASLLDGPAQEPQSAPWLSKSSVSSLRLQQLERMGFPTEQAVVALAATGRVEGAVSLLV 360
IQASLLDGPAQEPQSAPWLSKSSVSSLRLQQLERMGFPTEQAVVALAATGRVEGAVSLLV
Sbjct: 301 IQASLLDGPAQEPQSAPWLSKSSVSSLRLQQLERMGFPTEQAVVALAATGRVEGAVSLLV 360
Query: 361 GGQVGTETLVTHGKGGPAHSEGPGPP 386
GGQVGTETLVTHGKGGPAHSEGPGPP
Sbjct: 361 GGQVGTETLVTHGKGGPAHSEGPGPP 386
>gi|94818790 rhomboid domain containing 2 isoform a [Homo sapiens]
Length = 364
Score = 60.8 bits (146), Expect = 2e-09
Identities = 85/320 (26%), Positives = 134/320 (41%), Gaps = 44/320 (13%)
Query: 1 MHARGPHGQ---LSPALPLAS---SVLMLLMS--TLWLVG---AGPGLVLAPELLLDPWQ 49
M A GP + L P +P A+ ++L LL+S L+L+ A GL L E L + WQ
Sbjct: 1 MAASGPGCRSWCLCPEVPSATFFTALLSLLVSGPRLFLLQQPLAPSGLTLKSEALRN-WQ 59
Query: 50 VHRLLTHALGHTALPGLLLSLLLLPTVGWQQECHLGTLRFLHASALLALASGLLAVLLAG 109
V+RL+T+ + LL +++ E +GT+R + + A+ S ++ +
Sbjct: 60 VYRLVTYIFVYENPISLLCGAIIIWRFAGNFERTVGTVRHCFFTVIFAIFSAIIFLSFEA 119
Query: 110 LGLSSAAGSC----GYMPVHLAMLAGEGHRPRRPRG-----ALPPWLSPWLLLALTPLLS 160
+ S G G+ PV AML R R R +P L PWLLL + L+
Sbjct: 120 VSSLSKLGEVEDARGFTPVAFAMLGVTTVRSRMRRALVFGMVVPSVLVPWLLLGASWLI- 178
Query: 161 SEPPFLQLLCGLLAGLAYAAGAFRWLEPSER---------RLQVLQEGVLCRTLAGCWPL 211
+ FL +CGL GLAY ++ SER +++ + + ++G
Sbjct: 179 PQTSFLSNVCGLSIGLAYGLTYCYSIDLSERVALKLDQTFPFSLMRRISVFKYVSGSSAE 238
Query: 212 RLLATPGSLAELPVTHPAGVRPPIPGPPYVASPDLWSHWEDSALPP-------PSLRPVQ 264
R A L +P ++P P P + S + + A P P+L P Q
Sbjct: 239 RRAAQSRKLNPVPGSYPTQSCHPHLSPSHPVSQTQHASGQKLASWPSCTPGHMPTLPPYQ 298
Query: 265 PTWEGSSEAGLDWAGASFSP 284
P +GL + F P
Sbjct: 299 PA------SGLCYVQNHFGP 312
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 39.7 bits (91), Expect = 0.005
Identities = 25/65 (38%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 217 PGSLAELPVTHPAGVRP-PIPGPPYVASPDLWSHWEDSAL--------PPPSLRPVQPTW 267
PG+ A LPV P G P P P PD S DS PPP P QP W
Sbjct: 1529 PGAEAPLPVPPPTGTAAAPAPTPSPAGGPDPTSPSSDSGTAQAAPPLPPPPESGPGQPGW 1588
Query: 268 EGSSE 272
EG+ +
Sbjct: 1589 EGAPQ 1593
>gi|109637784 GLIS family zinc finger 3 isoform a [Homo sapiens]
Length = 930
Score = 35.8 bits (81), Expect = 0.067
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 212 RLLATPGSLAELPVTHPAGVRPPIPGPP-------YVASPDLWSHWEDSALPPPSL 260
RL PGS +LP P PP PGPP ++ P+L H + ALP +L
Sbjct: 432 RLEEFPGSTVDLPPAPPLPPLPPPPGPPPPYHAHAHLHHPELGPHAQQLALPQATL 487
>gi|109637782 GLIS family zinc finger 3 isoform b [Homo sapiens]
Length = 775
Score = 35.8 bits (81), Expect = 0.067
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 212 RLLATPGSLAELPVTHPAGVRPPIPGPP-------YVASPDLWSHWEDSALPPPSL 260
RL PGS +LP P PP PGPP ++ P+L H + ALP +L
Sbjct: 277 RLEEFPGSTVDLPPAPPLPPLPPPPGPPPPYHAHAHLHHPELGPHAQQLALPQATL 332
>gi|115511028 transmembrane 4 L six family member 19 [Homo sapiens]
Length = 209
Score = 35.4 bits (80), Expect = 0.088
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 18 SSVLMLLMSTLWLVGAGPGLVLAPELLLDPWQVHRLLTHALGHTALPG---------LLL 68
S +L L + T L AG + L LL W V LL LG A+ G +L
Sbjct: 15 SRILGLSLGTAALFAAGANVAL----LLPNWDVTYLLRGLLGRHAMLGTGLWGGGLMVLT 70
Query: 69 SLLLLPTVGWQQECHLGTLRFLHASALLALASGLLAVL 106
+ +L+ +GW+ C + L S L AL SG LA+L
Sbjct: 71 AAILISLMGWRYGCF--SKSGLCRSVLTALLSGGLALL 106
>gi|41152107 ubiquitin-like 7 [Homo sapiens]
Length = 380
Score = 35.0 bits (79), Expect = 0.11
Identities = 42/151 (27%), Positives = 66/151 (43%), Gaps = 18/151 (11%)
Query: 215 ATPGSLAELPVTHPAGVR-PPIPGPPYVASPDLWSHWEDSALPPPSLRPVQPTWEGSSEA 273
+TP S P + PA + GP + +L + ++ P S P +G S +
Sbjct: 242 STPSS--STPSSRPASLGYSGAAGPRPITQSELATALALASTPESSSHTPTPGTQGHS-S 298
Query: 274 GLDWAGASFSPGTPMWAALDEQMLQEGIQASLLDGPAQEPQSAPWLSKSSVSSLRLQQLE 333
G + GTP+ L Q LQ +QAS P+ + Q P +LQQL
Sbjct: 299 GTSPMSSGVQSGTPITNDLFSQALQHALQAS--GQPSLQSQWQP----------QLQQLR 346
Query: 334 RMGFPTEQ-AVVALAAT-GRVEGAVSLLVGG 362
MG ++ ++ AL AT G ++ A+ L+ G
Sbjct: 347 DMGIQDDELSLRALQATGGDIQAALELIFAG 377
>gi|14249682 ubiquitin-like 7 [Homo sapiens]
Length = 380
Score = 35.0 bits (79), Expect = 0.11
Identities = 42/151 (27%), Positives = 66/151 (43%), Gaps = 18/151 (11%)
Query: 215 ATPGSLAELPVTHPAGVR-PPIPGPPYVASPDLWSHWEDSALPPPSLRPVQPTWEGSSEA 273
+TP S P + PA + GP + +L + ++ P S P +G S +
Sbjct: 242 STPSS--STPSSRPASLGYSGAAGPRPITQSELATALALASTPESSSHTPTPGTQGHS-S 298
Query: 274 GLDWAGASFSPGTPMWAALDEQMLQEGIQASLLDGPAQEPQSAPWLSKSSVSSLRLQQLE 333
G + GTP+ L Q LQ +QAS P+ + Q P +LQQL
Sbjct: 299 GTSPMSSGVQSGTPITNDLFSQALQHALQAS--GQPSLQSQWQP----------QLQQLR 346
Query: 334 RMGFPTEQ-AVVALAAT-GRVEGAVSLLVGG 362
MG ++ ++ AL AT G ++ A+ L+ G
Sbjct: 347 DMGIQDDELSLRALQATGGDIQAALELIFAG 377
>gi|7706117 solute carrier family 15, member 3 [Homo sapiens]
Length = 581
Score = 34.7 bits (78), Expect = 0.15
Identities = 35/95 (36%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 62 ALPGLLLSLLLLPTVGWQQECHLGTLRFLHASALLAL-ASGLLAVLLAGLGLSSAAGSCG 120
AL L S LL P GW + +LG R + S LL L ASGLL G SS CG
Sbjct: 76 ALVFLGASYLLAPVGGWLADVYLGRYRAVALSLLLYLAASGLLPATAFPDGRSS---FCG 132
Query: 121 YMPVHLAMLAGEGHRPRRPRGALPPWLSPWLLLAL 155
MP + L PR + P+ +P L L
Sbjct: 133 EMPA--SPLGPACPSAGCPRSSPSPYCAPVLYAGL 165
>gi|148833506 obscurin, cytoskeletal calmodulin and titin-interacting
RhoGEF isoform b [Homo sapiens]
Length = 7968
Score = 33.9 bits (76), Expect = 0.25
Identities = 71/258 (27%), Positives = 91/258 (35%), Gaps = 51/258 (19%)
Query: 120 GYMPVHLAMLAGEGHRPRRPR---------GALPPWLSPWLLLAL----------TPLLS 160
G P H A+ G P R R GALP P + + LL+
Sbjct: 6879 GESPEHGALAPGSRRHPARRRHLLKGGYIAGALPGLREPLMEHRVLEEEAAREEQATLLA 6938
Query: 161 SEPPFLQLLCGLLAGLAYAAGAFRWLE--------PSERRLQVLQEGVLCRTLAGCWPLR 212
P F L +G A G LE PS Q L +G P+R
Sbjct: 6939 KAPSFETALRLPASGTHLAPGHSHSLEHDSPSTPRPSSEACGEAQR--LPSAPSGGAPIR 6996
Query: 213 LLATPGSLAELPVT--HPAGVRPPIPGP--------PYVASPDLWSHWEDSALPPPSLRP 262
+ P +LP T HP +P P P P+ P S ++ P P++ P
Sbjct: 6997 DMGHPQGSKQLPSTGGHPGTAQPERPSPDSPWGQPAPF-CHPKQGSAPQEGCSPHPAVAP 7055
Query: 263 VQPTW--EGS-SEAGL----DWAGASFSPGTPMWAA--LDEQMLQEGIQ--ASLLDGPAQ 311
P GS EA L + G +P P A+ LD +M I GP
Sbjct: 7056 CPPGSFPPGSCKEAPLVPSSPFLGQPQAPPAPAKASPPLDSKMGPGDISLPGRPKPGPCS 7115
Query: 312 EPQSAPWLSKSSVSSLRL 329
P SA S S VSSLR+
Sbjct: 7116 SPGSASQASSSQVSSLRV 7133
>gi|32307128 nuclear receptor coactivator 6 [Homo sapiens]
Length = 2063
Score = 33.9 bits (76), Expect = 0.25
Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 11/96 (11%)
Query: 228 PAGVRPPIPGPPYVASPDLWSHWEDSALPPPSLRPVQPTWEGSSEAGLDWAGASFSPGTP 287
P G+RP P V P W+ AL PP P Q + G+ A W A PG P
Sbjct: 299 PQGIRPQFTAPTQVPVPPGWNQLPSGALQPP---PAQGSL-GTMTANQGWKKAPL-PG-P 352
Query: 288 MWAALDEQMLQEGIQASLLDGPAQEPQSAPWLSKSS 323
M +Q LQ + + P+ P P+ S+ +
Sbjct: 353 M-----QQQLQARPSLATVQTPSHPPPPYPFGSQQA 383
>gi|148539835 dystroglycan 1 preproprotein [Homo sapiens]
Length = 895
Score = 33.5 bits (75), Expect = 0.33
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 210 PLRLLATPGSLAELPVTHPAG--VRPPIPGPPYVASPDLWSHWEDSALPPPSLRPVQPTW 267
P R++ TP S A P T VR P+PG P V + + P+L P+QPT
Sbjct: 335 PSRIVPTPTSPAIAPPTETMAPPVRDPVPGKPTVTI-----RTRGAIIQTPTLGPIQPT- 388
Query: 268 EGSSEAG 274
SEAG
Sbjct: 389 -RVSEAG 394
>gi|24797153 faciogenital dysplasia protein [Homo sapiens]
Length = 961
Score = 33.5 bits (75), Expect = 0.33
Identities = 52/204 (25%), Positives = 71/204 (34%), Gaps = 45/204 (22%)
Query: 210 PLRLLATPGSLAELPVTHPA------GVRPPIPGPP-YVASPDLWSHWEDSALPPPSLRP 262
P RL + PG E P P+ G +P +P P Y+ P + E +PPP RP
Sbjct: 130 PQRLRSDPGPPTETPSQRPSPLKRAPGPKPQVPPKPSYLQMPRMPPPLEP--IPPPPSRP 187
Query: 263 VQPTWEGSSEAGLDWAGASFSPGTPMWAALDEQMLQEGIQASLLDGPAQEPQSAPWLSKS 322
+ + GL A SP + ++L E+ +E + + D P P P
Sbjct: 188 LPA--DPRVAKGLA-PRAEASPSSAAVSSLIEKFEREPVIVAS-DRPVPGPSPGP----- 238
Query: 323 SVSSLRLQQLERMGFPTEQAVVALAATGRVEGAVSLLVGG-------------------- 362
+ L Q PT Q V G + LL G
Sbjct: 239 -PEPVMLPQ------PTSQPPVPQLPEGEASRCLFLLAPGPRDGEKVPNRDSGIDSISSP 291
Query: 363 QVGTETLVTHGKGGPAHSEGPGPP 386
ET G P+HS PGPP
Sbjct: 292 SNSEETCFVSDDGPPSHSLCPGPP 315
>gi|94818879 rhomboid domain containing 2 isoform b [Homo sapiens]
Length = 223
Score = 33.5 bits (75), Expect = 0.33
Identities = 40/158 (25%), Positives = 63/158 (39%), Gaps = 23/158 (14%)
Query: 143 LPPWLSPWLLLALTPLLSSEPPFLQLLCGLLAGLAYAAGAFRWLEPSER---------RL 193
+P L PWLLL + L+ + FL +CGL GLAY ++ SER
Sbjct: 21 VPSVLVPWLLLGASWLIP-QTSFLSNVCGLSIGLAYGLTYCYSIDLSERVALKLDQTFPF 79
Query: 194 QVLQEGVLCRTLAGCWPLRLLATPGSLAELPVTHPAGVRPPIPGPPYVASPDLWSHWEDS 253
+++ + + ++G R A L +P ++P P P + S + +
Sbjct: 80 SLMRRISVFKYVSGSSAERRAAQSRKLNPVPGSYPTQSCHPHLSPSHPVSQTQHASGQKL 139
Query: 254 ALPP-------PSLRPVQPTWEGSSEAGLDWAGASFSP 284
A P P+L P QP +GL + F P
Sbjct: 140 ASWPSCTPGHMPTLPPYQPA------SGLCYVQNHFGP 171
>gi|19924103 synapsin II isoform IIa [Homo sapiens]
Length = 582
Score = 33.1 bits (74), Expect = 0.43
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 212 RLLATPGSLAELP------VTHPAGVRPPIPGPPYVASPDLWSHWEDSALPPPSLRPVQP 265
R L+ +A LP + P +PP P PP + S +A P P RP
Sbjct: 7 RRLSDSSFIANLPNGYMTDLQRPEPQQPPPPPPPGPGAASA-SAAPPTASPGPERRPPPA 65
Query: 266 TWEGSSEAGLDWAGASFSPGTPMWAALDEQMLQEGIQASLLDGPAQEPQSA 316
+ A G+SF +++L + + Q A L+D PA P +A
Sbjct: 66 SAPAPQPAPTPSVGSSF------FSSLSQAVKQTAASAGLVDAPAPAPAAA 110
>gi|19924101 synapsin II isoform IIb [Homo sapiens]
Length = 478
Score = 33.1 bits (74), Expect = 0.43
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 13/111 (11%)
Query: 212 RLLATPGSLAELP------VTHPAGVRPPIPGPPYVASPDLWSHWEDSALPPPSLRPVQP 265
R L+ +A LP + P +PP P PP + S +A P P RP
Sbjct: 7 RRLSDSSFIANLPNGYMTDLQRPEPQQPPPPPPPGPGAASA-SAAPPTASPGPERRPPPA 65
Query: 266 TWEGSSEAGLDWAGASFSPGTPMWAALDEQMLQEGIQASLLDGPAQEPQSA 316
+ A G+SF +++L + + Q A L+D PA P +A
Sbjct: 66 SAPAPQPAPTPSVGSSF------FSSLSQAVKQTAASAGLVDAPAPAPAAA 110
>gi|119220575 mediator complex subunit 24 isoform 2 [Homo sapiens]
Length = 976
Score = 33.1 bits (74), Expect = 0.43
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 289 WAALDEQMLQEGIQASLLDGPAQEPQSAPW----LSKSSVSSLRLQQLERMGFPTEQAVV 344
W A++ +L+ G + L P Q+ S ++ S+ +Q+ + GFPT AV+
Sbjct: 176 WTAIEHSLLKLGEILANLSNPQLRSQAEQCGTLIRSIPTMLSVHAEQMHKTGFPTVHAVI 235
Query: 345 ALAATGRVEGAVSLLV 360
L T + G LV
Sbjct: 236 LLEGTMNLTGETQSLV 251
>gi|41281496 mediator complex subunit 24 isoform 1 [Homo sapiens]
Length = 989
Score = 33.1 bits (74), Expect = 0.43
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 289 WAALDEQMLQEGIQASLLDGPAQEPQSAPW----LSKSSVSSLRLQQLERMGFPTEQAVV 344
W A++ +L+ G + L P Q+ S ++ S+ +Q+ + GFPT AV+
Sbjct: 189 WTAIEHSLLKLGEILANLSNPQLRSQAEQCGTLIRSIPTMLSVHAEQMHKTGFPTVHAVI 248
Query: 345 ALAATGRVEGAVSLLV 360
L T + G LV
Sbjct: 249 LLEGTMNLTGETQSLV 264
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 32.7 bits (73), Expect = 0.57
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 228 PAGVRPPIPGPPYVASPDLWSHWEDSALPPPS 259
PA PP P PP++ SP L + A PPPS
Sbjct: 271 PASYTPPPPPPPFLNSPPLGPGLQPLAPPPPS 302
>gi|166706868 synaptopodin 2-like isoform a [Homo sapiens]
Length = 977
Score = 32.7 bits (73), Expect = 0.57
Identities = 54/234 (23%), Positives = 86/234 (36%), Gaps = 18/234 (7%)
Query: 112 LSSAAGSCGYM-PVHLAMLAGEGHRPRRPRGALPPWLSPWLLLALTPLLSSEPPFLQLLC 170
LS A +C +M PV H + + P P + P ++ +PP LL
Sbjct: 677 LSLGAEACNFMQPVGARSYKTLPHVTPKTPPPMAPKTPPPMTPKTPPPVAPKPPSRGLLD 736
Query: 171 GLLAGLAYAAGAFRWLEPSERRLQVLQEGVLCRTLAGCWPLRLLATPGSLAELPVTHPAG 230
GL+ G A +AG P RLQ + + + + TPG G
Sbjct: 737 GLVNGAASSAGI-----PEPPRLQGRGGELFAKRQSRADRYVVEGTPGP--------GLG 783
Query: 231 VRPPIPGPPYVASPDLWSHWEDSALPPP-SLRPVQPTWEGSSEAGLDWAGASFSPGTPMW 289
RP P P + P W + + PPP + P+ + + L A + TP
Sbjct: 784 PRPRSPSPT-PSLPPSWKYSPNIRAPPPIAYNPLLSPFFPQAARTLPKAQSQGPRATPKQ 842
Query: 290 A--ALDEQMLQEGIQASLLDGPAQEPQSAPWLSKSSVSSLRLQQLERMGFPTEQ 341
ALD Q + + + P + ++ S + R+Q++ R P Q
Sbjct: 843 GIKALDFMRHQPYQLKTAMFCFDEVPPTPGPIASGSPKTARVQEIRRFSTPAPQ 896
>gi|50301232 synaptopodin 2-like isoform b [Homo sapiens]
Length = 753
Score = 32.7 bits (73), Expect = 0.57
Identities = 54/234 (23%), Positives = 86/234 (36%), Gaps = 18/234 (7%)
Query: 112 LSSAAGSCGYM-PVHLAMLAGEGHRPRRPRGALPPWLSPWLLLALTPLLSSEPPFLQLLC 170
LS A +C +M PV H + + P P + P ++ +PP LL
Sbjct: 453 LSLGAEACNFMQPVGARSYKTLPHVTPKTPPPMAPKTPPPMTPKTPPPVAPKPPSRGLLD 512
Query: 171 GLLAGLAYAAGAFRWLEPSERRLQVLQEGVLCRTLAGCWPLRLLATPGSLAELPVTHPAG 230
GL+ G A +AG P RLQ + + + + TPG G
Sbjct: 513 GLVNGAASSAGI-----PEPPRLQGRGGELFAKRQSRADRYVVEGTPGP--------GLG 559
Query: 231 VRPPIPGPPYVASPDLWSHWEDSALPPP-SLRPVQPTWEGSSEAGLDWAGASFSPGTPMW 289
RP P P + P W + + PPP + P+ + + L A + TP
Sbjct: 560 PRPRSPSPT-PSLPPSWKYSPNIRAPPPIAYNPLLSPFFPQAARTLPKAQSQGPRATPKQ 618
Query: 290 A--ALDEQMLQEGIQASLLDGPAQEPQSAPWLSKSSVSSLRLQQLERMGFPTEQ 341
ALD Q + + + P + ++ S + R+Q++ R P Q
Sbjct: 619 GIKALDFMRHQPYQLKTAMFCFDEVPPTPGPIASGSPKTARVQEIRRFSTPAPQ 672
>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
Length = 1388
Score = 32.3 bits (72), Expect = 0.74
Identities = 46/184 (25%), Positives = 67/184 (36%), Gaps = 15/184 (8%)
Query: 213 LLATPGSLAELPVTHPAGVRP---PIPGPPYVASPDLWSHWEDSALP-PPSLRPVQPTWE 268
L AT LAE+P++ P GP S + + E+ P P + + T
Sbjct: 357 LAATAAGLAEVPISTAGEAEASSVPTGGPTLSMSTE---NPEEGVTPGPDNEERLAATAA 413
Query: 269 GSSEAGLDWAGASFSPGTPMWAALDEQMLQEGIQASLLDGPAQEPQSAPWLSKSSVSSLR 328
G +EA G + G LD M + + GP+ E + + VS
Sbjct: 414 GEAEALASMPGEVEASGVAP-GELDLSMSAQSLGEEATVGPSSEDSLTTAAAATEVSLST 472
Query: 329 LQQLERMGFPTEQAVVALAATGRVEGAVSLLVGGQ------VGTETLVTHGKGGPAHSEG 382
+ E G PT+ + L AT E AV+ G + E L+T G
Sbjct: 473 FEDEEASGVPTD-GLAPLTATMAPERAVTSGPGDEEDLAAATTEEPLITAGGEESGSPPP 531
Query: 383 PGPP 386
GPP
Sbjct: 532 DGPP 535
>gi|21322252 androgen receptor isoform 1 [Homo sapiens]
Length = 920
Score = 32.3 bits (72), Expect = 0.74
Identities = 33/127 (25%), Positives = 45/127 (35%), Gaps = 22/127 (17%)
Query: 197 QEGVLCRTLAGCWPLRLLATPGSLAELPVTHPAGVRPPIPGPPYVASPDLWSHWEDSALP 256
Q + C GC P PG+ V G+ +P PP ED +
Sbjct: 120 QSALECHPERGCVP-----EPGAA----VAASKGLPQQLPAPPD----------EDDSAA 160
Query: 257 PPSLRPVQPTWEGSSEAGLDWAGASFSPGTPMWAALDEQMLQEGIQASLLDGPAQEPQSA 316
P +L + PT+ G S D T L +Q QE + G A+E A
Sbjct: 161 PSTLSLLGPTFPGLSSCSADLKDILSEAST---MQLLQQQQQEAVSEGSSSGRAREASGA 217
Query: 317 PWLSKSS 323
P SK +
Sbjct: 218 PTSSKDN 224
>gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo
sapiens]
Length = 2113
Score = 32.3 bits (72), Expect = 0.74
Identities = 24/77 (31%), Positives = 29/77 (37%), Gaps = 12/77 (15%)
Query: 186 LEPSERRLQVLQEGVLCRTLAGCWPLRLLATPGSLAELPVTHPAGVRPPIPGPPYVASPD 245
L+P+ + L + G P R LA P PAG PP PGP P
Sbjct: 2006 LDPASKSLGLPHPGAPAAASTATLPQRTLAMPAP--------PAGTAPPAPGPTPAEPPT 2057
Query: 246 LWSHWEDSALPPPSLRP 262
S +A P PS P
Sbjct: 2058 APS----AAPPAPSTEP 2070
>gi|238859557 regulatory factor X1 [Homo sapiens]
Length = 979
Score = 32.0 bits (71), Expect = 0.97
Identities = 43/144 (29%), Positives = 61/144 (42%), Gaps = 22/144 (15%)
Query: 228 PAGVRPPIPGPPYVASPDLWSHWEDSALPPPSLRPVQ----PTWEGSSEAGLDWAGASFS 283
P G + + P V +P + + P PS P Q EG+ A + AS
Sbjct: 68 PGGQKQYVTELPAVPAPS-----QPTGAPTPSPAPQQYIVVTVSEGAMRASETVSEAS-- 120
Query: 284 PG-TPMWAALDEQMLQE--GIQASLLDGPAQEPQSAPWLSKSSVSSLRLQ--QLERMGFP 338
PG T + Q++Q+ G Q LL Q++ VS L+L Q+ + P
Sbjct: 121 PGSTASQTGVPTQVVQQVQGTQQRLL------VQTSVQAKPGHVSPLQLTNIQVPQQALP 174
Query: 339 TEQAVVALAATGRVEGAVSLLVGG 362
T++ VV AA G G VSL V G
Sbjct: 175 TQRLVVQSAAPGSKGGQVSLTVHG 198
>gi|239753316 PREDICTED: similar to Rho guanine nucleotide exchange
factor 4 [Homo sapiens]
Length = 368
Score = 32.0 bits (71), Expect = 0.97
Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 13/68 (19%)
Query: 224 PVTHPAGVRPPIPGPPYVASPDLWSHWEDSALPPPSLRPVQPTWEGSSEAGLDW-----A 278
P THPA PP P P SP LW L P +R Q E S + D +
Sbjct: 191 PWTHPAAAAPPPPAQP---SPSLWLE-----LGPACVRAQQCPSESSGQTSGDLGTSSSS 242
Query: 279 GASFSPGT 286
A SPG+
Sbjct: 243 SAGLSPGS 250
>gi|217416332 trinucleotide repeat containing 6C isoform 1 [Homo
sapiens]
Length = 1726
Score = 32.0 bits (71), Expect = 0.97
Identities = 44/170 (25%), Positives = 65/170 (38%), Gaps = 31/170 (18%)
Query: 236 PGPPYVASPDLWSHWEDSALPPPSLRPVQPTW------------EGSSEAGLDWAGASFS 283
P P VA + SAL P+ + +Q W + E G W A+
Sbjct: 845 PAEPPVAFGRAGAPVAASALCKPASKSMQEGWGSGGDEMNLSTSQWEDEEGDVWNNAASQ 904
Query: 284 PGTPM---WAALDEQMLQEGIQASLLDGPAQEPQSAPWLSKSSVSSLRLQQLERMGFPTE 340
T W ++ LQ+G++ S Q W + S ++QL MGFP E
Sbjct: 905 ESTSSCSSWGNAPKKGLQKGMKTS-------GKQDEAW-----IMSRLIKQLTDMGFPRE 952
Query: 341 QAVVALAATG-RVEGAVSLLVGGQVGTETL---VTHGKGGPAHSEGPGPP 386
A AL + ++ A+S L+ +V + VT G A G PP
Sbjct: 953 PAEEALKSNNMNLDQAMSALLEKKVDVDKRGLGVTDHNGMAAKPLGCRPP 1002
>gi|33413425 trinucleotide repeat containing 6C isoform 2 [Homo
sapiens]
Length = 1690
Score = 32.0 bits (71), Expect = 0.97
Identities = 44/170 (25%), Positives = 65/170 (38%), Gaps = 31/170 (18%)
Query: 236 PGPPYVASPDLWSHWEDSALPPPSLRPVQPTW------------EGSSEAGLDWAGASFS 283
P P VA + SAL P+ + +Q W + E G W A+
Sbjct: 848 PAEPPVAFGRAGAPVAASALCKPASKSMQEGWGSGGDEMNLSTSQWEDEEGDVWNNAASQ 907
Query: 284 PGTPM---WAALDEQMLQEGIQASLLDGPAQEPQSAPWLSKSSVSSLRLQQLERMGFPTE 340
T W ++ LQ+G++ S Q W + S ++QL MGFP E
Sbjct: 908 ESTSSCSSWGNAPKKGLQKGMKTS-------GKQDEAW-----IMSRLIKQLTDMGFPRE 955
Query: 341 QAVVALAATG-RVEGAVSLLVGGQVGTETL---VTHGKGGPAHSEGPGPP 386
A AL + ++ A+S L+ +V + VT G A G PP
Sbjct: 956 PAEEALKSNNMNLDQAMSALLEKKVDVDKRGLGVTDHNGMAAKPLGCRPP 1005
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 32.0 bits (71), Expect = 0.97
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 228 PAGVRPPIPGPPYVASPDLWSHWEDSALPPPSLRPVQPTWEGSSEAGL 275
P G+RPP+ GPP P +PPP +RP P G G+
Sbjct: 192 PPGMRPPM-GPPMGIPP---GRGTPMGMPPPGMRPPPPGMRGPPPPGM 235
>gi|118572599 formin homology 2 domain containing 1 [Homo sapiens]
Length = 1164
Score = 32.0 bits (71), Expect = 0.97
Identities = 28/108 (25%), Positives = 39/108 (36%), Gaps = 12/108 (11%)
Query: 217 PGSLAELPVTHPAGVRPPIPGPPYVASP-----------DLWSHWEDSALPPPSLRPVQP 265
P LP+ PP+P PP + P L DS+ P + V+
Sbjct: 570 PAPSPPLPLLSGVPPPPPLPPPPPIKGPFPPPPPLPLAAPLPHSVPDSSALPTKRKTVKL 629
Query: 266 TWEGSSEAGLDWAGAS-FSPGTPMWAALDEQMLQEGIQASLLDGPAQE 312
W AG AS F P +WA+LD + L + A+E
Sbjct: 630 FWRELKLAGGHGVSASRFGPCATLWASLDPVSVDTARLEHLFESRAKE 677
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,838,627
Number of Sequences: 37866
Number of extensions: 1032431
Number of successful extensions: 4238
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 129
Number of HSP's that attempted gapping in prelim test: 4112
Number of HSP's gapped (non-prelim): 253
length of query: 386
length of database: 18,247,518
effective HSP length: 104
effective length of query: 282
effective length of database: 14,309,454
effective search space: 4035266028
effective search space used: 4035266028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.