Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SLC15A3 Sequence: fasta or formatted (581aa) NCBI GI: 7706117
Description:

solute carrier family 15, member 3

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         63           2
 C cysteine            2.1         12           2
 D aspartate           2.2         13           1
 E glutamate           2.9         17           1
 F phenylalanine       5.5         32           2
 G glycine             7.7         45           2
 H histidine           1.4          8           2
 I isoleucine          4.8         28           1
 K lysine              1.2          7           1
 L leucine            14.5         84           4
 M methionine          2.6         15           1
 N asparagine          3.3         19           2
 P proline             7.2         42           2
 Q glutamine           4.5         26           2
 R arginine            6.2         36           2
 S serine              7.9         46           2
 T threonine           2.6         15           1
 V valine              7.2         42           4
 W tryptophan          2.1         12           2
 Y tyrosine            3.3         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 15, member 3 
SLC15A4               0.448   solute carrier family 15, member 4 
SLC15A1               0.072   solute carrier family 15 (oligopeptide transporter), ...
SLC15A2               0.067   peptide transporter 2 isoform a 
SLC15A2               0.050   peptide transporter 2 isoform b 
RHBDD3                0.009   rhomboid domain containing 3 
WNK2                  0.006   WNK lysine deficient protein kinase 2 
LOC100292292          0.006   PREDICTED: hypothetical protein 
LOC100291384          0.006   PREDICTED: hypothetical protein XP_002347156 
LOC100287578          0.006   PREDICTED: hypothetical protein XP_002343004 
HIVEP1                0.006   human immunodeficiency virus type I enhancer bindin...
LOC100287330          0.005   PREDICTED: hypothetical protein XP_002342702 
ANKRD11               0.005   ankyrin repeat domain 11 
LOC645971             0.005   PREDICTED: similar to hCG2036794 
LOC100289702          0.005   PREDICTED: hypothetical protein XP_002347517 
LOC645971             0.005   PREDICTED: similar to hCG2036794 
CCR8                  0.005   chemokine (C-C motif) receptor 8 
COL27A1               0.005   collagen, type XXVII, alpha 1 
ARPP-21               0.005   cyclic AMP-regulated phosphoprotein, 21 kD isoform 1...
CD320                 0.004   8D6 antigen 
SRD5A3                0.004   steroid 5 alpha-reductase 3 
SGSH                  0.004   N-sulfoglucosamine sulfohydrolase precursor 
PELP1                 0.004   proline, glutamic acid and leucine rich protein 1 [...
PCNXL2                0.004   pecanex-like 2 
SLC37A3               0.004   solute carrier family 37 (glycerol-3-phosphate trans...
FOXA3                 0.004   forkhead box A3 
DRD4                  0.004   dopamine receptor D4 
FLJ22184              0.004   PREDICTED: hypothetical protein FLJ22184 
LOC100291816          0.004   PREDICTED: hypothetical protein XP_002345321 
FLJ22184              0.004   PREDICTED: hypothetical protein FLJ22184 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press