Guide to the Human Genome
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Name: RHBDD3 Sequence: fasta or formatted (386aa) NCBI GI: 11072101
Description:

rhomboid domain containing 3

Referenced in:

Serine Proteases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4         44           2
 C cysteine            1.3          5           1
 D aspartate           1.6          6           1
 E glutamate           4.9         19           1
 F phenylalanine       1.3          5           1
 G glycine            10.9         42           2
 H histidine           3.4         13           1
 I isoleucine          0.5          2           1
 K lysine              0.5          2           1
 L leucine            20.2         78           4
 M methionine          2.1          8           1
 N asparagine          0.0          0           0
 P proline            11.1         43           3
 Q glutamine           4.4         17           2
 R arginine            4.4         17           2
 S serine              8.3         32           2
 T threonine           4.1         16           1
 V valine              5.4         21           2
 W tryptophan          3.4         13           1
 Y tyrosine            0.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   rhomboid domain containing 3 
RHBDD2                0.047   rhomboid domain containing 2 isoform a 
CIC                   0.020   capicua homolog 
GLIS3                 0.014   GLIS family zinc finger 3 isoform a 
GLIS3                 0.014   GLIS family zinc finger 3 isoform b 
TM4SF19               0.013   transmembrane 4 L six family member 19 
UBL7                  0.013   ubiquitin-like 7 
UBL7                  0.013   ubiquitin-like 7 
SLC15A3               0.013   solute carrier family 15, member 3 
OBSCN                 0.012   obscurin, cytoskeletal calmodulin and titin-interac...
NCOA6                 0.012   nuclear receptor coactivator 6 
DAG1                  0.010   dystroglycan 1 preproprotein 
FGD1                  0.010   faciogenital dysplasia protein 
RHBDD2                0.010   rhomboid domain containing 2 isoform b 
SYN2                  0.010   synapsin II isoform IIa 
SYN2                  0.010   synapsin II isoform IIb 
MED24                 0.010   mediator complex subunit 24 isoform 2 
MED24                 0.010   mediator complex subunit 24 isoform 1 
RAX                   0.010   retina and anterior neural fold homeobox 
SYNPO2L               0.010   synaptopodin 2-like isoform a 
SYNPO2L               0.010   synaptopodin 2-like isoform b 
COL15A1               0.009   alpha 1 type XV collagen precursor 
AR                    0.009   androgen receptor isoform 1 
DSCAML1               0.009   Down syndrome cell adhesion molecule like 1 
RFX1                  0.009   regulatory factor X1 
LOC730032             0.009   PREDICTED: similar to Rho guanine nucleotide exchan...
TNRC6C                0.009   trinucleotide repeat containing 6C isoform 1 
TNRC6C                0.009   trinucleotide repeat containing 6C isoform 2 
SNRPB                 0.009   small nuclear ribonucleoprotein polypeptide B/B' iso...
FHOD1                 0.009   formin homology 2 domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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