Guide to the Human Genome
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Name: RHBDD2 Sequence: fasta or formatted (364aa) NCBI GI: 94818790
Description:

rhomboid domain containing 2 isoform a

Referenced in:

Serine Proteases

Other entries for this name:
alt prot [223aa] rhomboid domain containing 2 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         29           2
 C cysteine            2.7         10           1
 D aspartate           0.8          3           1
 E glutamate           2.7         10           1
 F phenylalanine       5.5         20           2
 G glycine             7.7         28           1
 H histidine           1.9          7           1
 I isoleucine          3.8         14           3
 K lysine              1.9          7           1
 L leucine            11.0         40           3
 M methionine          1.9          7           1
 N asparagine          2.2          8           1
 P proline             9.3         34           2
 Q glutamine           3.6         13           2
 R arginine            5.2         19           2
 S serine             12.6         46           3
 T threonine           6.0         22           2
 V valine              8.0         29           2
 W tryptophan          1.6          6           1
 Y tyrosine            3.3         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   rhomboid domain containing 2 isoform a 
RHBDD2                0.607   rhomboid domain containing 2 isoform b 
RHBDD3                0.050   rhomboid domain containing 3 
GLTSCR1               0.025   glioma tumor suppressor candidate region gene 1 [Ho...
SEC24C                0.018   SEC24-related protein C 
SEC24C                0.018   SEC24-related protein C 
PML                   0.017   promyelocytic leukemia protein isoform 11 
PML                   0.017   promyelocytic leukemia protein isoform 9 
POLR2A                0.017   DNA-directed RNA polymerase II A 
RHBDD1                0.017   rhomboid domain containing 1 
MED15                 0.017   mediator complex subunit 15 isoform b 
SEC31A                0.017   SEC31 homolog A isoform 3 
SOX9                  0.015   transcription factor SOX9 
TRIM33                0.015   tripartite motif-containing 33 protein isoform beta ...
TRIM33                0.015   tripartite motif-containing 33 protein isoform alpha...
AGAP2                 0.014   centaurin, gamma 1 isoform PIKE-L 
MUC4                  0.014   mucin 4 isoform a 
SFPQ                  0.014   splicing factor proline/glutamine rich (polypyrimidin...
TCF4                  0.014   transcription factor 4 isoform b 
TCF4                  0.014   transcription factor 4 isoform a 
MED15                 0.014   mediator complex subunit 15 isoform a 
MBD5                  0.014   methyl-CpG binding domain protein 5 
MUC2                  0.014   mucin 2 precursor 
NCOR2                 0.014   nuclear receptor co-repressor 2 isoform 2 
NCOR2                 0.014   nuclear receptor co-repressor 2 isoform 1 
PRDM2                 0.014   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.014   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.014   retinoblastoma protein-binding zinc finger protein i...
RPH3A                 0.014   rabphilin 3A homolog isoform 1 
RPH3A                 0.014   rabphilin 3A homolog isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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