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Search of human proteins with 16751833
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|16751833 caspase-1 dominant-negative inhibitor pseudo-ICE
isoform 2 [Homo sapiens]
(97 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|16751833 caspase-1 dominant-negative inhibitor pseudo-ICE iso... 194 2e-50
gi|62953113 caspase-1 dominant-negative inhibitor pseudo-ICE iso... 180 2e-46
gi|15431328 caspase 1 isoform alpha precursor [Homo sapiens] 176 5e-45
gi|4502573 caspase 1 isoform beta precursor [Homo sapiens] 175 6e-45
gi|55925612 caspase recruitment domain family, member 17 [Homo s... 155 7e-39
gi|10954343 ICEBERG caspase-1 inhibitor [Homo sapiens] 102 9e-23
gi|4502577 caspase 4 isoform alpha precursor [Homo sapiens] 44 3e-05
gi|7662404 caspase recruitment domain family, member 8 [Homo sap... 41 2e-04
gi|15431334 caspase 1 isoform epsilon [Homo sapiens] 39 7e-04
gi|15431330 caspase 1 isoform gamma precursor [Homo sapiens] 38 0.002
gi|15431332 caspase 1 isoform delta [Homo sapiens] 38 0.002
gi|40788015 caspase recruitment domain protein 12 [Homo sapiens] 38 0.002
gi|4502141 baculoviral IAP repeat-containing protein 2 [Homo sap... 36 0.006
gi|33946285 baculoviral IAP repeat-containing protein 3 [Homo sa... 35 0.010
gi|4502139 baculoviral IAP repeat-containing protein 3 [Homo sap... 35 0.010
gi|209870071 caspase 5 isoform b precursor [Homo sapiens] 33 0.037
gi|19115954 dynein, axonemal, heavy chain 5 [Homo sapiens] 32 0.083
gi|209870079 caspase 5 isoform f precursor [Homo sapiens] 32 0.11
gi|209870069 caspase 5 isoform a precursor [Homo sapiens] 32 0.11
gi|11545912 nucleotide-binding oligomerization domain containing... 31 0.24
gi|16554564 caspase recruitment domain family, member 6 [Homo sa... 31 0.24
gi|34303932 transmembrane and coiled-coil domains 5A [Homo sapiens] 28 1.6
gi|145309298 coiled-coil domain containing 16 [Homo sapiens] 28 1.6
gi|118442825 methyltransferase like 6 [Homo sapiens] 28 2.1
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ... 27 3.5
gi|63999048 syntaxin binding protein 4 [Homo sapiens] 27 3.5
gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens] 27 3.5
gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo sap... 27 4.6
gi|38045896 RAB6-interacting protein 2 isoform delta [Homo sapiens] 27 4.6
gi|154277118 spectrin repeat containing, nuclear envelope 1 isof... 27 4.6
>gi|16751833 caspase-1 dominant-negative inhibitor pseudo-ICE
isoform 2 [Homo sapiens]
Length = 97
Score = 194 bits (492), Expect = 2e-50
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MADKVLKEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDS 60
MADKVLKEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDS
Sbjct: 1 MADKVLKEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDS 60
Query: 61 VIPKGAQACQICITYICEEDSYLAETLGLSAGPIPGN 97
VIPKGAQACQICITYICEEDSYLAETLGLSAGPIPGN
Sbjct: 61 VIPKGAQACQICITYICEEDSYLAETLGLSAGPIPGN 97
>gi|62953113 caspase-1 dominant-negative inhibitor pseudo-ICE
isoform 1 [Homo sapiens]
Length = 197
Score = 180 bits (456), Expect = 2e-46
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 1 MADKVLKEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDS 60
MADKVLKEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDS
Sbjct: 1 MADKVLKEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDS 60
Query: 61 VIPKGAQACQICITYICEEDSYLAETLGLSA 91
VIPKGAQACQICITYICEEDSYLAETLGLSA
Sbjct: 61 VIPKGAQACQICITYICEEDSYLAETLGLSA 91
>gi|15431328 caspase 1 isoform alpha precursor [Homo sapiens]
Length = 404
Score = 176 bits (445), Expect = 5e-45
Identities = 90/97 (92%), Positives = 91/97 (93%)
Query: 1 MADKVLKEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDS 60
MADKVLKEKRKLFI SMGEGTINGLLDELLQTRVLN+EEMEKVKRENATVMDKTRALIDS
Sbjct: 1 MADKVLKEKRKLFIRSMGEGTINGLLDELLQTRVLNKEEMEKVKRENATVMDKTRALIDS 60
Query: 61 VIPKGAQACQICITYICEEDSYLAETLGLSAGPIPGN 97
VIPKGAQACQICITYICEEDSYLA TLGLSA GN
Sbjct: 61 VIPKGAQACQICITYICEEDSYLAGTLGLSADQTSGN 97
>gi|4502573 caspase 1 isoform beta precursor [Homo sapiens]
Length = 383
Score = 175 bits (444), Expect = 6e-45
Identities = 89/93 (95%), Positives = 90/93 (96%)
Query: 1 MADKVLKEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDS 60
MADKVLKEKRKLFI SMGEGTINGLLDELLQTRVLN+EEMEKVKRENATVMDKTRALIDS
Sbjct: 1 MADKVLKEKRKLFIRSMGEGTINGLLDELLQTRVLNKEEMEKVKRENATVMDKTRALIDS 60
Query: 61 VIPKGAQACQICITYICEEDSYLAETLGLSAGP 93
VIPKGAQACQICITYICEEDSYLA TLGLSA P
Sbjct: 61 VIPKGAQACQICITYICEEDSYLAGTLGLSAAP 93
>gi|55925612 caspase recruitment domain family, member 17 [Homo
sapiens]
Length = 110
Score = 155 bits (392), Expect = 7e-39
Identities = 80/97 (82%), Positives = 86/97 (88%)
Query: 1 MADKVLKEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDS 60
MADKVLKEKRK FI S+GEGTINGLL ELL+TRVL+QEE+E VK ENATVMDK RAL+DS
Sbjct: 1 MADKVLKEKRKQFIRSVGEGTINGLLGELLETRVLSQEEIEIVKCENATVMDKARALLDS 60
Query: 61 VIPKGAQACQICITYICEEDSYLAETLGLSAGPIPGN 97
VI KGA ACQICITYICEEDS+LA TLGLSAGP GN
Sbjct: 61 VIRKGAPACQICITYICEEDSHLAGTLGLSAGPTSGN 97
>gi|10954343 ICEBERG caspase-1 inhibitor [Homo sapiens]
Length = 90
Score = 102 bits (253), Expect = 9e-23
Identities = 50/89 (56%), Positives = 67/89 (75%)
Query: 1 MADKVLKEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDS 60
MAD++L++KR++FIHS+G GTIN LLD LL+ V++QE+M KV+ EN TVMDK R LID
Sbjct: 1 MADQLLRKKRRIFIHSVGAGTINALLDCLLEDEVISQEDMNKVRDENDTVMDKARVLIDL 60
Query: 61 VIPKGAQACQICITYICEEDSYLAETLGL 89
V KG ++C I ++CEED LA +GL
Sbjct: 61 VTGKGPKSCCKFIKHLCEEDPQLASKMGL 89
>gi|4502577 caspase 4 isoform alpha precursor [Homo sapiens]
Length = 377
Score = 43.9 bits (102), Expect = 3e-05
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 1 MADKVLKEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDS 60
MA+ ++K + S+G+ + G+LD L++ VLN +E EK K +A DK R + DS
Sbjct: 1 MAEGNHRKKPLKVLESLGKDFLTGVLDNLVEQNVLNWKEEEKKKYYDAKTEDKVRVMADS 60
Query: 61 VIPKGAQACQICI 73
+ K A Q+ +
Sbjct: 61 MQEKQRMAGQMLL 73
>gi|7662404 caspase recruitment domain family, member 8 [Homo
sapiens]
Length = 431
Score = 41.2 bits (95), Expect = 2e-04
Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 20 GTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDSVIPKGAQACQICITYICEE 79
G + G+LD+L VL + E E V++E T K AL+ V KG A + I E
Sbjct: 360 GDLKGVLDDLQDNEVLTENEKELVEQEK-TRQSKNEALLSMVEKKGDLALDVLFRSISER 418
Query: 80 DSYLAETL 87
D YL L
Sbjct: 419 DPYLVSYL 426
>gi|15431334 caspase 1 isoform epsilon [Homo sapiens]
Length = 88
Score = 39.3 bits (90), Expect = 7e-04
Identities = 18/23 (78%), Positives = 20/23 (86%)
Query: 1 MADKVLKEKRKLFIHSMGEGTIN 23
MADKVLKEKRKLFI SMGE ++
Sbjct: 1 MADKVLKEKRKLFIRSMGEDNVS 23
>gi|15431330 caspase 1 isoform gamma precursor [Homo sapiens]
Length = 311
Score = 38.1 bits (87), Expect = 0.002
Identities = 18/19 (94%), Positives = 18/19 (94%)
Query: 1 MADKVLKEKRKLFIHSMGE 19
MADKVLKEKRKLFI SMGE
Sbjct: 1 MADKVLKEKRKLFIRSMGE 19
>gi|15431332 caspase 1 isoform delta [Homo sapiens]
Length = 263
Score = 38.1 bits (87), Expect = 0.002
Identities = 18/19 (94%), Positives = 18/19 (94%)
Query: 1 MADKVLKEKRKLFIHSMGE 19
MADKVLKEKRKLFI SMGE
Sbjct: 1 MADKVLKEKRKLFIRSMGE 19
>gi|40788015 caspase recruitment domain protein 12 [Homo sapiens]
Length = 1024
Score = 38.1 bits (87), Expect = 0.002
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 6 LKEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDSVIPKG 65
+K+ + I MG I + D+L VLN+EE+ + E D R +I ++ KG
Sbjct: 4 IKDNSRALIQRMGMTVIKQITDDLFVWNVLNREEVNIICCEKVE-QDAARGIIHMILKKG 62
Query: 66 AQACQICITYICE 78
+++C + + + E
Sbjct: 63 SESCNLFLKSLKE 75
>gi|4502141 baculoviral IAP repeat-containing protein 2 [Homo
sapiens]
Length = 618
Score = 36.2 bits (82), Expect = 0.006
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 25 LLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDSVIPKGAQACQICITYICEEDSYLA 84
+LD LL+ V+N++E + +K++ + + R LID+++ KG A I + E DS L
Sbjct: 478 ILDNLLKANVINKQEHDIIKQKTQIPL-QARELIDTILVKGNAAANIFKNCLKEIDSTLY 536
Query: 85 ETL 87
+ L
Sbjct: 537 KNL 539
>gi|33946285 baculoviral IAP repeat-containing protein 3 [Homo
sapiens]
Length = 604
Score = 35.4 bits (80), Expect = 0.010
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 5 VLKEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDSVIPK 64
+ K + LF H + +LD LL ++N++E + +K++ T + + R LID+++ K
Sbjct: 447 IRKNRMALFQHLT---CVIPILDSLLTAGIINEQEHDVIKQKTQTSL-QARELIDTILVK 502
Query: 65 GAQACQICITYICEEDSYLAETL 87
G A + + E ++ L E L
Sbjct: 503 GNIAATVFRNSLQEAEAVLYEHL 525
>gi|4502139 baculoviral IAP repeat-containing protein 3 [Homo
sapiens]
Length = 604
Score = 35.4 bits (80), Expect = 0.010
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 5 VLKEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDSVIPK 64
+ K + LF H + +LD LL ++N++E + +K++ T + + R LID+++ K
Sbjct: 447 IRKNRMALFQHLT---CVIPILDSLLTAGIINEQEHDVIKQKTQTSL-QARELIDTILVK 502
Query: 65 GAQACQICITYICEEDSYLAETL 87
G A + + E ++ L E L
Sbjct: 503 GNIAATVFRNSLQEAEAVLYEHL 525
>gi|209870071 caspase 5 isoform b precursor [Homo sapiens]
Length = 376
Score = 33.5 bits (75), Expect = 0.037
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 1 MADKVLKEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDS 60
MA+ K+K + +G+ ++G+ + L + VL +E EK K + + DK L+DS
Sbjct: 1 MAEDNHKKKTVKMLEYLGKDVLHGVFNYLAKHDVLTLKEEEKKKYYDTKIEDKALILVDS 60
Query: 61 VIPKGAQACQICITYICEEDSYLAET---LGLSAGP 93
+ K A Q+ + D + L + AGP
Sbjct: 61 -LRKNRVAHQMFTQTLLNMDQKITSVKPLLQIEAGP 95
>gi|19115954 dynein, axonemal, heavy chain 5 [Homo sapiens]
Length = 4624
Score = 32.3 bits (72), Expect = 0.083
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 13 FIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENA 48
F S+ E +N L++ LL VL++EE EK+ EN+
Sbjct: 871 FKSSLVEEAVNELVNMLLDVEVLSEEESEKISNENS 906
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 23 NGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDSV 61
N D +L+ + + EKVK E V D+ +A++DS+
Sbjct: 3235 NDKADMVLKEVTMKAQAAEKVKAEVQKVKDRAQAIVDSI 3273
>gi|209870079 caspase 5 isoform f precursor [Homo sapiens]
Length = 447
Score = 32.0 bits (71), Expect = 0.11
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 7 KEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDSVIPKGA 66
K+K + +G+ ++G+ + L + VL +E EK K + + DK L+DS + K
Sbjct: 78 KKKTVKMLEYLGKDVLHGVFNYLAKHDVLTLKEEEKKKYYDTKIEDKALILVDS-LRKNR 136
Query: 67 QACQICITYICEEDSYLAET---LGLSAGP 93
A Q+ + D + L + AGP
Sbjct: 137 VAHQMFTQTLLNMDQKITSVKPLLQIEAGP 166
>gi|209870069 caspase 5 isoform a precursor [Homo sapiens]
Length = 434
Score = 32.0 bits (71), Expect = 0.11
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 7 KEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDSVIPKGA 66
K+K + +G+ ++G+ + L + VL +E EK K + + DK L+DS + K
Sbjct: 65 KKKTVKMLEYLGKDVLHGVFNYLAKHDVLTLKEEEKKKYYDTKIEDKALILVDS-LRKNR 123
Query: 67 QACQICITYICEEDSYLAET---LGLSAGP 93
A Q+ + D + L + AGP
Sbjct: 124 VAHQMFTQTLLNMDQKITSVKPLLQIEAGP 153
>gi|11545912 nucleotide-binding oligomerization domain containing 2
[Homo sapiens]
Length = 1040
Score = 30.8 bits (68), Expect = 0.24
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 2 ADKVLKEKRKLFIHSMGEGTING---LLDELLQTRVLNQEEMEKVKRENATVMDKTRALI 58
+ + + +R + + G++ G +LD LL VL+ E+ E + R L+
Sbjct: 30 SQEAFQAQRSQLVELLVSGSLEGFESVLDWLLSWEVLSWEDYEGFHLLGQPLSHLARRLL 89
Query: 59 DSVIPKGAQACQ 70
D+V KG ACQ
Sbjct: 90 DTVWNKGTWACQ 101
>gi|16554564 caspase recruitment domain family, member 6 [Homo
sapiens]
Length = 1037
Score = 30.8 bits (68), Expect = 0.24
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 4 KVLKEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENAT-VMDKTRALIDSVI 62
++++ +RK + + + +LD L R++++EE E + EN T ++ K+R L+ V
Sbjct: 9 EIIERERKKLLEILQHDP-DSILDTLTSRRLISEEEYETL--ENVTDLLKKSRKLLILVQ 65
Query: 63 PKGAQACQ 70
KG CQ
Sbjct: 66 KKGEATCQ 73
>gi|34303932 transmembrane and coiled-coil domains 5A [Homo
sapiens]
Length = 288
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 19 EGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRAL 57
E I L E++QTR L ++E + ++EN T M++ RAL
Sbjct: 42 EDKIQRLESEIIQTRGLVEDE--EWEKENRTTMERERAL 78
>gi|145309298 coiled-coil domain containing 16 [Homo sapiens]
Length = 372
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 33 RVLNQEEMEKVKRENATVMDKTRALIDSVIPK----GAQACQICITYICEEDSYLAETLG 88
RV+NQEE+ ++ +E + +R I+S K G +C +C T + E + LG
Sbjct: 14 RVINQEELRRLMKEKQR-LSTSRKRIESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLG 72
>gi|118442825 methyltransferase like 6 [Homo sapiens]
Length = 284
Score = 27.7 bits (60), Expect = 2.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 30 LQTRVLNQEEMEKVKRENATVMD 52
LQ R+L EE EK+KR+ V D
Sbjct: 9 LQARILTSEEEEKLKRDQTLVSD 31
>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin (with
transmembrane signal), 1 [Homo sapiens]
Length = 3259
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 14 IHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTRALI 58
+H G+ T ++ LL + +EE+E+VK E T+ K ++L+
Sbjct: 1703 VHPAGD-TAKECMETLLSSNASMKEELERVKMEYETLSKKFQSLM 1746
>gi|63999048 syntaxin binding protein 4 [Homo sapiens]
Length = 553
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Query: 22 INGLLDELLQT---RVLNQEEMEKVKRENATVMDKTRAL 57
+N L ++LL++ R EE++ VK+E V+++TRAL
Sbjct: 311 VNTLKEKLLESDKQRKQLTEELQNVKQEAKAVVEETRAL 349
>gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens]
Length = 464
Score = 26.9 bits (58), Expect = 3.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 65 GAQACQICITYICEEDSYLAETLG 88
G+ C++C+T E SYLA T G
Sbjct: 52 GSYECKLCLTLHNNEGSYLAHTQG 75
>gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo
sapiens]
Length = 1116
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 3 DKVLKEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTR 55
++VL+ K++ + ++ E N L EL ++ QEE+ +KRE ++ + +
Sbjct: 921 EEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLK 973
>gi|38045896 RAB6-interacting protein 2 isoform delta [Homo sapiens]
Length = 1088
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 3 DKVLKEKRKLFIHSMGEGTINGLLDELLQTRVLNQEEMEKVKRENATVMDKTR 55
++VL+ K++ + ++ E N L EL ++ QEE+ +KRE ++ + +
Sbjct: 893 EEVLEMKQEALLAAISEKDANIALLELSSSKKKTQEEVAALKREKDRLVQQLK 945
>gi|154277118 spectrin repeat containing, nuclear envelope 1 isoform
4 [Homo sapiens]
Length = 3321
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 25 LLDELLQTRVLNQEEMEKVKRENATVMDKTRALIDSVIPK 64
LL E +T + NQE + K +E + MDK + L P+
Sbjct: 931 LLPEETETCLFNQEILAKDIKEMSEEMDKNKNLFSQAFPE 970
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,556,768
Number of Sequences: 37866
Number of extensions: 127730
Number of successful extensions: 541
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 496
Number of HSP's gapped (non-prelim): 51
length of query: 97
length of database: 18,247,518
effective HSP length: 68
effective length of query: 29
effective length of database: 15,672,630
effective search space: 454506270
effective search space used: 454506270
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.