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Search of human proteins with 166197712
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|166197712 LSM14 homolog A isoform a [Homo sapiens]
(463 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|166197712 LSM14 homolog A isoform a [Homo sapiens] 944 0.0
gi|166197710 LSM14 homolog A isoform b [Homo sapiens] 931 0.0
gi|148839362 LSM14 homolog B [Homo sapiens] 343 2e-94
gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo s... 54 3e-07
gi|15011916 nucleolar protein family A, member 1 [Homo sapiens] 54 4e-07
gi|9506713 nucleolar protein family A, member 1 [Homo sapiens] 54 4e-07
gi|55956788 nucleolin [Homo sapiens] 51 3e-06
gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo sap... 50 3e-06
gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo s... 50 6e-06
gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo s... 50 6e-06
gi|12056465 fibrillarin [Homo sapiens] 50 6e-06
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens] 47 3e-05
gi|28875797 small protein rich in arginine and glycine [Homo sap... 47 4e-05
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens] 47 4e-05
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 47 4e-05
gi|109452587 family with sequence similarity 98, member B isofor... 47 5e-05
gi|153791630 bromodomain and WD repeat domain containing 3 [Homo... 46 6e-05
gi|66346685 SERPINE1 mRNA binding protein 1 isoform 4 [Homo sapi... 45 2e-04
gi|24308265 methyltransferase like 14 [Homo sapiens] 43 5e-04
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 43 5e-04
gi|55956899 keratin 9 [Homo sapiens] 42 0.001
gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting ... 42 0.002
gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting ... 42 0.002
gi|130502140 NEZHA isoform 2 [Homo sapiens] 42 0.002
gi|122937255 NEZHA isoform 1 [Homo sapiens] 42 0.002
gi|56699482 hypothetical protein LOC25940 [Homo sapiens] 41 0.002
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 41 0.003
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 41 0.003
gi|14141161 heterogeneous nuclear ribonucleoprotein U isoform b ... 40 0.003
gi|74136883 heterogeneous nuclear ribonucleoprotein U isoform a ... 40 0.003
>gi|166197712 LSM14 homolog A isoform a [Homo sapiens]
Length = 463
Score = 944 bits (2439), Expect = 0.0
Identities = 463/463 (100%), Positives = 463/463 (100%)
Query: 1 MSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDE 60
MSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDE
Sbjct: 1 MSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDE 60
Query: 61 VFEYIIFRGSDIKDLTVCEPPKPQCSLPQDPAIVQSSLGSSTSSFQSMGSYGPFGRMPTY 120
VFEYIIFRGSDIKDLTVCEPPKPQCSLPQDPAIVQSSLGSSTSSFQSMGSYGPFGRMPTY
Sbjct: 61 VFEYIIFRGSDIKDLTVCEPPKPQCSLPQDPAIVQSSLGSSTSSFQSMGSYGPFGRMPTY 120
Query: 121 SQFSPSSLVGQQFGAVGVAGSSLTSFGTETSNSGTLPQSSAVGSAFTQDTRSLKTQLSQG 180
SQFSPSSLVGQQFGAVGVAGSSLTSFGTETSNSGTLPQSSAVGSAFTQDTRSLKTQLSQG
Sbjct: 121 SQFSPSSLVGQQFGAVGVAGSSLTSFGTETSNSGTLPQSSAVGSAFTQDTRSLKTQLSQG 180
Query: 181 RSSPQLDPLRKSPTMEQAVQTASAHLPAPAAVGRRSPVSTRPLPSASQKAGENQEHRRAE 240
RSSPQLDPLRKSPTMEQAVQTASAHLPAPAAVGRRSPVSTRPLPSASQKAGENQEHRRAE
Sbjct: 181 RSSPQLDPLRKSPTMEQAVQTASAHLPAPAAVGRRSPVSTRPLPSASQKAGENQEHRRAE 240
Query: 241 VHKVSRPENEQLRNDNKRQVAPGAPSAPRRGRGGHRGGRGRFGIRRDGPMKFEKDFDFES 300
VHKVSRPENEQLRNDNKRQVAPGAPSAPRRGRGGHRGGRGRFGIRRDGPMKFEKDFDFES
Sbjct: 241 VHKVSRPENEQLRNDNKRQVAPGAPSAPRRGRGGHRGGRGRFGIRRDGPMKFEKDFDFES 300
Query: 301 ANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNSEGNADEEDPLGPN 360
ANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNSEGNADEEDPLGPN
Sbjct: 301 ANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNSEGNADEEDPLGPN 360
Query: 361 CYYDKTKSFFDNISCDDNRERRPTWAEERRLNAETFGIPLRPNRGRGGYRGRGGLGFRGG 420
CYYDKTKSFFDNISCDDNRERRPTWAEERRLNAETFGIPLRPNRGRGGYRGRGGLGFRGG
Sbjct: 361 CYYDKTKSFFDNISCDDNRERRPTWAEERRLNAETFGIPLRPNRGRGGYRGRGGLGFRGG 420
Query: 421 RGRGGGRGGTFTAPRGFRGGFRGGRGGREFADFEYRKTTAFGP 463
RGRGGGRGGTFTAPRGFRGGFRGGRGGREFADFEYRKTTAFGP
Sbjct: 421 RGRGGGRGGTFTAPRGFRGGFRGGRGGREFADFEYRKTTAFGP 463
>gi|166197710 LSM14 homolog A isoform b [Homo sapiens]
Length = 463
Score = 931 bits (2406), Expect = 0.0
Identities = 457/457 (100%), Positives = 457/457 (100%)
Query: 1 MSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDE 60
MSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDE
Sbjct: 1 MSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDE 60
Query: 61 VFEYIIFRGSDIKDLTVCEPPKPQCSLPQDPAIVQSSLGSSTSSFQSMGSYGPFGRMPTY 120
VFEYIIFRGSDIKDLTVCEPPKPQCSLPQDPAIVQSSLGSSTSSFQSMGSYGPFGRMPTY
Sbjct: 61 VFEYIIFRGSDIKDLTVCEPPKPQCSLPQDPAIVQSSLGSSTSSFQSMGSYGPFGRMPTY 120
Query: 121 SQFSPSSLVGQQFGAVGVAGSSLTSFGTETSNSGTLPQSSAVGSAFTQDTRSLKTQLSQG 180
SQFSPSSLVGQQFGAVGVAGSSLTSFGTETSNSGTLPQSSAVGSAFTQDTRSLKTQLSQG
Sbjct: 121 SQFSPSSLVGQQFGAVGVAGSSLTSFGTETSNSGTLPQSSAVGSAFTQDTRSLKTQLSQG 180
Query: 181 RSSPQLDPLRKSPTMEQAVQTASAHLPAPAAVGRRSPVSTRPLPSASQKAGENQEHRRAE 240
RSSPQLDPLRKSPTMEQAVQTASAHLPAPAAVGRRSPVSTRPLPSASQKAGENQEHRRAE
Sbjct: 181 RSSPQLDPLRKSPTMEQAVQTASAHLPAPAAVGRRSPVSTRPLPSASQKAGENQEHRRAE 240
Query: 241 VHKVSRPENEQLRNDNKRQVAPGAPSAPRRGRGGHRGGRGRFGIRRDGPMKFEKDFDFES 300
VHKVSRPENEQLRNDNKRQVAPGAPSAPRRGRGGHRGGRGRFGIRRDGPMKFEKDFDFES
Sbjct: 241 VHKVSRPENEQLRNDNKRQVAPGAPSAPRRGRGGHRGGRGRFGIRRDGPMKFEKDFDFES 300
Query: 301 ANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNSEGNADEEDPLGPN 360
ANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNSEGNADEEDPLGPN
Sbjct: 301 ANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNSEGNADEEDPLGPN 360
Query: 361 CYYDKTKSFFDNISCDDNRERRPTWAEERRLNAETFGIPLRPNRGRGGYRGRGGLGFRGG 420
CYYDKTKSFFDNISCDDNRERRPTWAEERRLNAETFGIPLRPNRGRGGYRGRGGLGFRGG
Sbjct: 361 CYYDKTKSFFDNISCDDNRERRPTWAEERRLNAETFGIPLRPNRGRGGYRGRGGLGFRGG 420
Query: 421 RGRGGGRGGTFTAPRGFRGGFRGGRGGREFADFEYRK 457
RGRGGGRGGTFTAPRGFRGGFRGGRGGREFADFEYRK
Sbjct: 421 RGRGGGRGGTFTAPRGFRGGFRGGRGGREFADFEYRK 457
>gi|148839362 LSM14 homolog B [Homo sapiens]
Length = 385
Score = 343 bits (879), Expect = 2e-94
Identities = 219/441 (49%), Positives = 261/441 (59%), Gaps = 87/441 (19%)
Query: 2 SGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDEV 61
S GTPY+GSKISLISKA+IRYEGILYTIDT+NSTVALAKVRSFGTEDRPTDRP PPR+E+
Sbjct: 4 SSGTPYLGSKISLISKAQIRYEGILYTIDTDNSTVALAKVRSFGTEDRPTDRPAPPREEI 63
Query: 62 FEYIIFRGSDIKDLTVCEPPKPQCSLPQDPAIVQSSLGS-STSSFQSMGSYGPFGRMPTY 120
+EYIIFRGSDIKD+TVCEPPK Q +LPQDPAIVQSSLGS S S FQ Y PF M Y
Sbjct: 64 YEYIIFRGSDIKDITVCEPPKAQHTLPQDPAIVQSSLGSASASPFQPHVPYSPFRGMAPY 123
Query: 121 SQFSPSSLVGQQFGAVGVAGSSLTSFGTETSNSGTLPQSSAVGSAFTQDTRSLKTQLSQG 180
+ SSL+ QQ+ A L G
Sbjct: 124 GPLAASSLLSQQYAA----------------------------------------SLGLG 143
Query: 181 RSSPQLDPLRKSPTMEQAVQTASAH-------LPAPAAVGRRSPVSTRPLPSASQKAGEN 233
P + P+ KSP +EQAVQT SA LP G + ++ R +S+ A +
Sbjct: 144 AGFPSI-PVGKSPMVEQAVQTGSADNLNAKKLLPGKGTTG--TQLNGRQAQPSSKTASD- 199
Query: 234 QEHRRAEVHKVSRPENEQLRNDNKRQVAPGAPSAPRRGRGGHRGGRGRFGIR------RD 287
V + Q+ ++N+R P+R R G+R R R + ++
Sbjct: 200 ------VVQPAAVQAQGQVNDENRR---------PQRRRSGNRRTRNRSRGQNRPTNVKE 244
Query: 288 GPMKFEKDFDFESANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNS 347
+KFE DFDFESANAQFN+EE+D+EF KL K+DK EK GE+K D V TQ++
Sbjct: 245 NTIKFEGDFDFESANAQFNREELDKEFKKKLNFKDDKAEK------GEEK-DLAVVTQSA 297
Query: 348 EGNADEEDPLGPNCYYDKTKSFFDNISCD-DNRERRPTWAEERRLNAETFGIPLRPNRGR 406
E A EED LGPNCYYDK+KSFFDNIS + RR TWAEER+LN ETFG+ R RGR
Sbjct: 298 EAPA-EEDLLGPNCYYDKSKSFFDNISSELKTSSRRTTWAEERKLNTETFGVSGRFLRGR 356
Query: 407 GGYRGRGGLGFRGGRGRGGGR 427
RG GFRGGRG G R
Sbjct: 357 SS-RG----GFRGGRGNGTTR 372
>gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo
sapiens]
Length = 600
Score = 53.9 bits (128), Expect = 3e-07
Identities = 112/460 (24%), Positives = 154/460 (33%), Gaps = 99/460 (21%)
Query: 42 RSFGTEDRPTDRPIPPRDEVFEYIIFRGSDIKDLTVCEPPKPQCSLPQDPAIVQSSLGSS 101
+S+GT +PTD Y G + +PP + A Q G
Sbjct: 39 QSYGTYGQPTDVSYTQAQTTATY----GQTAYATSYGQPPTGYTTPTAPQAYSQPVQGYG 94
Query: 102 TSSFQ-----------SMGSYGPFGRMPTYSQFSPSSLVGQQFGAVGVAGSSLTSFGTET 150
T ++ S + +G P Y + GQQ A T
Sbjct: 95 TGAYDTTTATVTTTQASYAAQSAYGTQPAYPAY------GQQPAATA-----------PT 137
Query: 151 SNSGTLPQSSAVGSAFTQDTRSLKTQLSQGRSSPQLDPLRKSPTMEQAVQTASAHLPAPA 210
S S T P S S Q+T + Q S Q + P QT S + AP+
Sbjct: 138 SYSSTQPTSYDQSSYSQQNTYGQPSSYGQQSSYGQQSSYGQQPPTSYPPQTGS-YSQAPS 196
Query: 211 AVGRRSPVSTRPLPSASQKAGENQEHRRA------EVHKVSRP-ENEQLRNDNKRQVAPG 263
++S S Q++ Q+H + E S P EN + + R G
Sbjct: 197 QYSQQSS-------SYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDNRGRGRG 249
Query: 264 A---PSAPRRGRGGHRGGRGRFGIRRD-----GPMKFEKDFDF----------------- 298
R GRGG RGG G G R GPM D D
Sbjct: 250 GFDRGGMSRGGRGGGRGGMGSAGERGGFNKPGGPMDEGPDLDLGPPVDPDEDSDNSAIYV 309
Query: 299 ESANAQFNKEEIDREFHNKLKLKEDKLEKQEK------PVNGEDKGDSGVDTQNSEGNAD 352
+ N +++ F +K +K Q G+ KGD+ V
Sbjct: 310 QGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSY-------- 361
Query: 353 EEDPLGPNCYYDKTKSFFDNISCDDNRERRPTWAEERRLNAETFGIPLRPNRG-----RG 407
EDP + +FD ++ + ++ +N+ G+P R RG RG
Sbjct: 362 -EDPPTAKAAVE----WFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRG 416
Query: 408 GYRGRGGLGFRGGR--GRGGGRGG-TFTAPRGFRGGFRGG 444
G G GG G GR GRGG RGG PRG RG GG
Sbjct: 417 GPGGPGGPGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGG 456
Score = 48.5 bits (114), Expect = 1e-05
Identities = 29/47 (61%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 405 GRGGYRGRGGLG--FRGGRG--RGGGRGGTFTAPRGFRGGFRGGRGG 447
GRGG RGG G FRGGRG RGG RGG GF GG RGG GG
Sbjct: 518 GRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGG 564
Score = 46.6 bits (109), Expect = 5e-05
Identities = 29/45 (64%), Positives = 29/45 (64%), Gaps = 5/45 (11%)
Query: 407 GGYRGRGGLG-FRGGRGR---GGGRGGTFTAPR-GFRGGFRGGRG 446
GG RGRGG G RGGRG GG GG F R G RGGFRGGRG
Sbjct: 504 GGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRG 548
Score = 40.4 bits (93), Expect = 0.003
Identities = 28/52 (53%), Positives = 28/52 (53%), Gaps = 13/52 (25%)
Query: 405 GRGGYRGRGGLGFRGGRG--RGGGRGGTFTAPRG-------FRGGFRGGRGG 447
GRGG RG GFRGGRG RGG GG P G GG RGGRGG
Sbjct: 535 GRGGDRG----GFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGG 582
Score = 30.8 bits (68), Expect = 2.7
Identities = 23/43 (53%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 405 GRGGYRGRGGLGFRGGRGRGG-GRGGTFTAPRGFRGGFRGGRG 446
G G R G RG RGRGG RGG RG RGG RGG G
Sbjct: 231 GPGENRSMSGPDNRG-RGRGGFDRGGM---SRGGRGGGRGGMG 269
Score = 30.4 bits (67), Expect = 3.5
Identities = 20/42 (47%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 407 GGYRGRG-GLGFRGGRGRGGGRGGTFTAPRGFRGGFRGGRGG 447
GG+ G G G RG GRGG F RGG GGRGG
Sbjct: 227 GGFSGPGENRSMSGPDNRGRGRGG-FDRGGMSRGGRGGGRGG 267
>gi|15011916 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 53.5 bits (127), Expect = 4e-07
Identities = 32/47 (68%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 402 PNRGRGGYRGRGGLGFRGGRGRGGGRGGTFTAPR-GFRGGFRGGRGG 447
P RG GG GRGG RGG GRGGGRGG F R G GGFRGGRGG
Sbjct: 167 PPRG-GGRGGRGG--GRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGG 210
Score = 40.8 bits (94), Expect = 0.003
Identities = 30/53 (56%), Positives = 31/53 (58%), Gaps = 12/53 (22%)
Query: 405 GRGGY-RGRGGLGF-RGGR------GRGGGRGGTFTAPRGFRGGF--RGGRGG 447
GRGG+ RG GG GF RGG G GGG GG F G RGGF GGRGG
Sbjct: 7 GRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRG--GGRGGFGRGGGRGG 57
Score = 35.0 bits (79), Expect = 0.14
Identities = 19/31 (61%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 403 NRGRGGYRGRGGLGFRGGR----GRGGGRGG 429
N RGG G GG FRGG GRGGGRGG
Sbjct: 27 NHFRGGGGGGGGGNFRGGGRGGFGRGGGRGG 57
Score = 33.1 bits (74), Expect = 0.55
Identities = 22/44 (50%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 403 NRGRGGYRGRGGLGFRGGRG-RGGGRGGTFTAPRGFRGGFRGGR 445
NRG RGG G GG RGGGRGG G RGGF G+
Sbjct: 21 NRGGSSNHFRGGGGGGGGGNFRGGGRGG--FGRGGGRGGFNKGQ 62
Score = 32.3 bits (72), Expect = 0.93
Identities = 24/51 (47%), Positives = 26/51 (50%), Gaps = 12/51 (23%)
Query: 409 YRGRGGLGFRGGRGRGG-GRGGTFTAPRG---------FRGGFRG--GRGG 447
+RG G GF G G GG RGG+ RG FRGG RG GRGG
Sbjct: 3 FRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGG 53
Score = 31.6 bits (70), Expect = 1.6
Identities = 18/23 (78%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Query: 406 RGGYRGRGGLGFRGGRGRGGGRG 428
RGG RG GG GFRGGRG GG RG
Sbjct: 194 RGG-RGGGGGGFRGGRG-GGFRG 214
>gi|9506713 nucleolar protein family A, member 1 [Homo sapiens]
Length = 217
Score = 53.5 bits (127), Expect = 4e-07
Identities = 32/47 (68%), Positives = 32/47 (68%), Gaps = 4/47 (8%)
Query: 402 PNRGRGGYRGRGGLGFRGGRGRGGGRGGTFTAPR-GFRGGFRGGRGG 447
P RG GG GRGG RGG GRGGGRGG F R G GGFRGGRGG
Sbjct: 167 PPRG-GGRGGRGG--GRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGG 210
Score = 40.8 bits (94), Expect = 0.003
Identities = 30/53 (56%), Positives = 31/53 (58%), Gaps = 12/53 (22%)
Query: 405 GRGGY-RGRGGLGF-RGGR------GRGGGRGGTFTAPRGFRGGF--RGGRGG 447
GRGG+ RG GG GF RGG G GGG GG F G RGGF GGRGG
Sbjct: 7 GRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRG--GGRGGFGRGGGRGG 57
Score = 35.0 bits (79), Expect = 0.14
Identities = 19/31 (61%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 403 NRGRGGYRGRGGLGFRGGR----GRGGGRGG 429
N RGG G GG FRGG GRGGGRGG
Sbjct: 27 NHFRGGGGGGGGGNFRGGGRGGFGRGGGRGG 57
Score = 33.1 bits (74), Expect = 0.55
Identities = 22/44 (50%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 403 NRGRGGYRGRGGLGFRGGRG-RGGGRGGTFTAPRGFRGGFRGGR 445
NRG RGG G GG RGGGRGG G RGGF G+
Sbjct: 21 NRGGSSNHFRGGGGGGGGGNFRGGGRGG--FGRGGGRGGFNKGQ 62
Score = 32.3 bits (72), Expect = 0.93
Identities = 24/51 (47%), Positives = 26/51 (50%), Gaps = 12/51 (23%)
Query: 409 YRGRGGLGFRGGRGRGG-GRGGTFTAPRG---------FRGGFRG--GRGG 447
+RG G GF G G GG RGG+ RG FRGG RG GRGG
Sbjct: 3 FRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGG 53
Score = 31.6 bits (70), Expect = 1.6
Identities = 18/23 (78%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Query: 406 RGGYRGRGGLGFRGGRGRGGGRG 428
RGG RG GG GFRGGRG GG RG
Sbjct: 194 RGG-RGGGGGGFRGGRG-GGFRG 214
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 50.8 bits (120), Expect = 3e-06
Identities = 30/44 (68%), Positives = 31/44 (70%), Gaps = 7/44 (15%)
Query: 405 GRGGYRGRGGLGFRGGRGRGGGRG-GTFTAPRGFRGGFRGGRGG 447
GRGG+ GRGG RGGRG GGRG G F G RGGFRGGRGG
Sbjct: 659 GRGGFGGRGG--GRGGRGGFGGRGRGGF----GGRGGFRGGRGG 696
Score = 36.6 bits (83), Expect = 0.049
Identities = 17/22 (77%), Positives = 18/22 (81%), Gaps = 2/22 (9%)
Query: 404 RGRGGYRGRGGLGFRGGRGRGG 425
RGRGG+ GRG GFRGGRG GG
Sbjct: 679 RGRGGFGGRG--GFRGGRGGGG 698
Score = 34.7 bits (78), Expect = 0.19
Identities = 21/39 (53%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 405 GRGGY--RGRGGLGFRGGRGRGGGRGGTFTAPRGFRGGF 441
GRGG+ RGRGG G RGG RGG GG P+G + F
Sbjct: 672 GRGGFGGRGRGGFGGRGG-FRGGRGGGGDHKPQGKKTKF 709
Score = 33.9 bits (76), Expect = 0.32
Identities = 20/39 (51%), Positives = 21/39 (53%), Gaps = 13/39 (33%)
Query: 410 RGRGGLGFRGGRGRGGGRGGTFTAPRGFRGGFRGGRGGR 448
+G GG G GRGGGRGG GG GGRGGR
Sbjct: 648 KGEGGFG-----GRGGGRGGF--------GGRGGGRGGR 673
>gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo
sapiens]
Length = 656
Score = 50.4 bits (119), Expect = 3e-06
Identities = 90/341 (26%), Positives = 121/341 (35%), Gaps = 67/341 (19%)
Query: 150 TSNSGTLPQSSAVGSAFTQDTRSLKTQLSQGRSSPQLDPLRKSPTMEQAVQTASAHLPAP 209
TS S T P S S Q+T + Q S Q + P QT S + AP
Sbjct: 193 TSYSSTQPTSYDQSSYSQQNTYGQPSSYGQQSSYGQQSSYGQQPPTSYPPQTGS-YSQAP 251
Query: 210 AAVGRRSPVSTRPLPSASQKAGENQEHRRA------EVHKVSRP-ENEQLRNDNKRQVAP 262
+ ++S S Q++ Q+H + E S P EN + + R
Sbjct: 252 SQYSQQSS-------SYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDNRGRGR 304
Query: 263 GA---PSAPRRGRGGHRGGRGRFGIRRD-----GPMKFEKDFDF---------------- 298
G R GRGG RGG G G R GPM D D
Sbjct: 305 GGFDRGGMSRGGRGGGRGGMGSAGERGGFNKPGGPMDEGPDLDLGPPVDPDEDSDNSAIY 364
Query: 299 -ESANAQFNKEEIDREFHNKLKLKEDKLEKQEK------PVNGEDKGDSGVDTQNSEGNA 351
+ N +++ F +K +K Q G+ KGD+ V
Sbjct: 365 VQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSY------- 417
Query: 352 DEEDPLGPNCYYDKTKSFFDNISCDDNRERRPTWAEERRLNAETFGIPLRPNRG-----R 406
EDP + +FD ++ + ++ +N+ G+P R RG R
Sbjct: 418 --EDPPTAKAAVE----WFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLR 471
Query: 407 GGYRGRGGLGFRGGR--GRGGGRGG-TFTAPRGFRGGFRGG 444
GG G GG G GR GRGG RGG PRG RG GG
Sbjct: 472 GGPGGPGGPGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGG 512
Score = 48.5 bits (114), Expect = 1e-05
Identities = 29/47 (61%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 405 GRGGYRGRGGLG--FRGGRG--RGGGRGGTFTAPRGFRGGFRGGRGG 447
GRGG RGG G FRGGRG RGG RGG GF GG RGG GG
Sbjct: 574 GRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGG 620
Score = 46.6 bits (109), Expect = 5e-05
Identities = 29/45 (64%), Positives = 29/45 (64%), Gaps = 5/45 (11%)
Query: 407 GGYRGRGGLG-FRGGRGR---GGGRGGTFTAPR-GFRGGFRGGRG 446
GG RGRGG G RGGRG GG GG F R G RGGFRGGRG
Sbjct: 560 GGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRG 604
Score = 40.4 bits (93), Expect = 0.003
Identities = 28/52 (53%), Positives = 28/52 (53%), Gaps = 13/52 (25%)
Query: 405 GRGGYRGRGGLGFRGGRG--RGGGRGGTFTAPRG-------FRGGFRGGRGG 447
GRGG RG GFRGGRG RGG GG P G GG RGGRGG
Sbjct: 591 GRGGDRG----GFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGG 638
Score = 30.8 bits (68), Expect = 2.7
Identities = 23/43 (53%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 405 GRGGYRGRGGLGFRGGRGRGG-GRGGTFTAPRGFRGGFRGGRG 446
G G R G RG RGRGG RGG RG RGG RGG G
Sbjct: 287 GPGENRSMSGPDNRG-RGRGGFDRGGM---SRGGRGGGRGGMG 325
Score = 30.4 bits (67), Expect = 3.5
Identities = 20/42 (47%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 407 GGYRGRG-GLGFRGGRGRGGGRGGTFTAPRGFRGGFRGGRGG 447
GG+ G G G RG GRGG F RGG GGRGG
Sbjct: 283 GGFSGPGENRSMSGPDNRGRGRGG-FDRGGMSRGGRGGGRGG 323
>gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo
sapiens]
Length = 655
Score = 49.7 bits (117), Expect = 6e-06
Identities = 87/340 (25%), Positives = 119/340 (35%), Gaps = 66/340 (19%)
Query: 150 TSNSGTLPQSSAVGSAFTQDTRSLKTQLSQGRSSPQLDPLRKSPTMEQAVQTASAHLPAP 209
TS S T P S S Q+T + Q S Q + P QT S + AP
Sbjct: 193 TSYSSTQPTSYDQSSYSQQNTYGQPSSYGQQSSYGQQSSYGQQPPTSYPPQTGS-YSQAP 251
Query: 210 AAVGRRSPVSTRPLPSASQKAGENQEHRRA------EVHKVSRP-ENEQLRNDNKRQVAP 262
+ ++S S Q++ Q+H + E S P EN + + R
Sbjct: 252 SQYSQQSS-------SYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDNRGRGR 304
Query: 263 GAPSAPRRGRGGHRGGRGRFGI-------RRDGPMKFEKDFDF----------------- 298
G RGG GGRG G + GPM D D
Sbjct: 305 GGFDRGGMSRGGRGGGRGGMGAGERGGFNKPGGPMDEGPDLDLGPPVDPDEDSDNSAIYV 364
Query: 299 ESANAQFNKEEIDREFHNKLKLKEDKLEKQEK------PVNGEDKGDSGVDTQNSEGNAD 352
+ N +++ F +K +K Q G+ KGD+ V
Sbjct: 365 QGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSY-------- 416
Query: 353 EEDPLGPNCYYDKTKSFFDNISCDDNRERRPTWAEERRLNAETFGIPLRPNRG-----RG 407
EDP + +FD ++ + ++ +N+ G+P R RG RG
Sbjct: 417 -EDPPTAKAAVE----WFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRG 471
Query: 408 GYRGRGGLGFRGGR--GRGGGRGG-TFTAPRGFRGGFRGG 444
G G GG G GR GRGG RGG PRG RG GG
Sbjct: 472 GPGGPGGPGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGG 511
Score = 48.5 bits (114), Expect = 1e-05
Identities = 29/47 (61%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 405 GRGGYRGRGGLG--FRGGRG--RGGGRGGTFTAPRGFRGGFRGGRGG 447
GRGG RGG G FRGGRG RGG RGG GF GG RGG GG
Sbjct: 573 GRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGG 619
Score = 46.6 bits (109), Expect = 5e-05
Identities = 29/45 (64%), Positives = 29/45 (64%), Gaps = 5/45 (11%)
Query: 407 GGYRGRGGLG-FRGGRGR---GGGRGGTFTAPR-GFRGGFRGGRG 446
GG RGRGG G RGGRG GG GG F R G RGGFRGGRG
Sbjct: 559 GGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRG 603
Score = 40.4 bits (93), Expect = 0.003
Identities = 28/52 (53%), Positives = 28/52 (53%), Gaps = 13/52 (25%)
Query: 405 GRGGYRGRGGLGFRGGRG--RGGGRGGTFTAPRG-------FRGGFRGGRGG 447
GRGG RG GFRGGRG RGG GG P G GG RGGRGG
Sbjct: 590 GRGGDRG----GFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGG 637
Score = 32.7 bits (73), Expect = 0.71
Identities = 25/50 (50%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 405 GRGGYRGRGGLGFRGGRGRGG-GRGGTFTAPRGFRGGFRGGRGGREFADF 453
G G R G RG RGRGG RGG RG RGG RGG G E F
Sbjct: 287 GPGENRSMSGPDNRG-RGRGGFDRGGM---SRGGRGGGRGGMGAGERGGF 332
Score = 30.4 bits (67), Expect = 3.5
Identities = 20/42 (47%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 407 GGYRGRG-GLGFRGGRGRGGGRGGTFTAPRGFRGGFRGGRGG 447
GG+ G G G RG GRGG F RGG GGRGG
Sbjct: 283 GGFSGPGENRSMSGPDNRGRGRGG-FDRGGMSRGGRGGGRGG 323
>gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo
sapiens]
Length = 661
Score = 49.7 bits (117), Expect = 6e-06
Identities = 87/340 (25%), Positives = 119/340 (35%), Gaps = 66/340 (19%)
Query: 150 TSNSGTLPQSSAVGSAFTQDTRSLKTQLSQGRSSPQLDPLRKSPTMEQAVQTASAHLPAP 209
TS S T P S S Q+T + Q S Q + P QT S + AP
Sbjct: 199 TSYSSTQPTSYDQSSYSQQNTYGQPSSYGQQSSYGQQSSYGQQPPTSYPPQTGS-YSQAP 257
Query: 210 AAVGRRSPVSTRPLPSASQKAGENQEHRRA------EVHKVSRP-ENEQLRNDNKRQVAP 262
+ ++S S Q++ Q+H + E S P EN + + R
Sbjct: 258 SQYSQQSS-------SYGQQSSFRQDHPSSMGVYGQESGGFSGPGENRSMSGPDNRGRGR 310
Query: 263 GAPSAPRRGRGGHRGGRGRFGI-------RRDGPMKFEKDFDF----------------- 298
G RGG GGRG G + GPM D D
Sbjct: 311 GGFDRGGMSRGGRGGGRGGMGAGERGGFNKPGGPMDEGPDLDLGPPVDPDEDSDNSAIYV 370
Query: 299 ESANAQFNKEEIDREFHNKLKLKEDKLEKQEK------PVNGEDKGDSGVDTQNSEGNAD 352
+ N +++ F +K +K Q G+ KGD+ V
Sbjct: 371 QGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSY-------- 422
Query: 353 EEDPLGPNCYYDKTKSFFDNISCDDNRERRPTWAEERRLNAETFGIPLRPNRG-----RG 407
EDP + +FD ++ + ++ +N+ G+P R RG RG
Sbjct: 423 -EDPPTAKAAVE----WFDGKDFQGSKLKVSLARKKPPMNSMRGGLPPREGRGMPPPLRG 477
Query: 408 GYRGRGGLGFRGGR--GRGGGRGG-TFTAPRGFRGGFRGG 444
G G GG G GR GRGG RGG PRG RG GG
Sbjct: 478 GPGGPGGPGGPMGRMGGRGGDRGGFPPRGPRGSRGNPSGG 517
Score = 48.5 bits (114), Expect = 1e-05
Identities = 29/47 (61%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 405 GRGGYRGRGGLG--FRGGRG--RGGGRGGTFTAPRGFRGGFRGGRGG 447
GRGG RGG G FRGGRG RGG RGG GF GG RGG GG
Sbjct: 579 GRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGG 625
Score = 46.6 bits (109), Expect = 5e-05
Identities = 29/45 (64%), Positives = 29/45 (64%), Gaps = 5/45 (11%)
Query: 407 GGYRGRGGLG-FRGGRGR---GGGRGGTFTAPR-GFRGGFRGGRG 446
GG RGRGG G RGGRG GG GG F R G RGGFRGGRG
Sbjct: 565 GGDRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRG 609
Score = 40.4 bits (93), Expect = 0.003
Identities = 28/52 (53%), Positives = 28/52 (53%), Gaps = 13/52 (25%)
Query: 405 GRGGYRGRGGLGFRGGRG--RGGGRGGTFTAPRG-------FRGGFRGGRGG 447
GRGG RG GFRGGRG RGG GG P G GG RGGRGG
Sbjct: 596 GRGGDRG----GFRGGRGMDRGGFGGGRRGGPGGPPGPLMEQMGGRRGGRGG 643
Score = 32.7 bits (73), Expect = 0.71
Identities = 25/50 (50%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 405 GRGGYRGRGGLGFRGGRGRGG-GRGGTFTAPRGFRGGFRGGRGGREFADF 453
G G R G RG RGRGG RGG RG RGG RGG G E F
Sbjct: 293 GPGENRSMSGPDNRG-RGRGGFDRGGM---SRGGRGGGRGGMGAGERGGF 338
Score = 30.4 bits (67), Expect = 3.5
Identities = 20/42 (47%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 407 GGYRGRG-GLGFRGGRGRGGGRGGTFTAPRGFRGGFRGGRGG 447
GG+ G G G RG GRGG F RGG GGRGG
Sbjct: 289 GGFSGPGENRSMSGPDNRGRGRGG-FDRGGMSRGGRGGGRGG 329
>gi|12056465 fibrillarin [Homo sapiens]
Length = 321
Score = 49.7 bits (117), Expect = 6e-06
Identities = 25/41 (60%), Positives = 26/41 (63%)
Query: 407 GGYRGRGGLGFRGGRGRGGGRGGTFTAPRGFRGGFRGGRGG 447
GG+ GRGG G RGGRG GG GG GFRG RGG GG
Sbjct: 10 GGFGGRGGFGDRGGRGGRGGFGGGRGRGGGFRGRGRGGGGG 50
Score = 44.3 bits (103), Expect = 2e-04
Identities = 27/48 (56%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 404 RGRGG-YRGRG-GLGFRGGRGRGGGRGGTFTAPRGFRGGFRGGRGGRE 449
RGRGG +RGRG G G GG G GGGRGG G RG RGG+ G +
Sbjct: 34 RGRGGGFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGRGRGGKRGNQ 81
Score = 43.5 bits (101), Expect = 4e-04
Identities = 27/45 (60%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 405 GRGGYRGRGGLGFRG-GRGRGGGRGGTFTAPRGFRGGFRGGRGGR 448
G GG RGRGG GFRG GRG GGG GG RG G GG GR
Sbjct: 29 GFGGGRGRGG-GFRGRGRGGGGGGGGGGGGGRGGGGFHSGGNRGR 72
Score = 43.1 bits (100), Expect = 5e-04
Identities = 27/46 (58%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 406 RGGYRGRGGLGFRGGRGRGGG-RGGTFTAPRGFRGGFRGGRGGREF 450
RGG GRGG G GGRGRGGG RG G GG GGRGG F
Sbjct: 21 RGGRGGRGGFG--GGRGRGGGFRGRGRGGGGGGGGGGGGGRGGGGF 64
Score = 38.1 bits (87), Expect = 0.017
Identities = 24/39 (61%), Positives = 25/39 (64%), Gaps = 7/39 (17%)
Query: 408 GYRGRGGLGFRGGRGRGGGRGGTFTAPRGFRGGFRGGRG 446
G+ RGG GF GGRG G RGG RG RGGF GGRG
Sbjct: 4 GFSPRGG-GF-GGRGGFGDRGG-----RGGRGGFGGGRG 35
Score = 34.3 bits (77), Expect = 0.25
Identities = 24/47 (51%), Positives = 26/47 (55%), Gaps = 9/47 (19%)
Query: 404 RGRGGYRGRGGLGFRGGRG--RGGGRGGTFTAPRGFRGGFRGGRGGR 448
RG GG G GG G RGG G GG RG RG RGG RG + G+
Sbjct: 45 RGGGGGGGGGGGGGRGGGGFHSGGNRG------RG-RGGKRGNQSGK 84
>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
Length = 592
Score = 47.4 bits (111), Expect = 3e-05
Identities = 100/429 (23%), Positives = 142/429 (33%), Gaps = 99/429 (23%)
Query: 97 SLGSSTSSFQSMGSYGPFGRMPTYSQFSPS---------SLVGQQFGAVGVAGSSLTSFG 147
S G S QS +YG G Y Q S S S GQ + G S + +
Sbjct: 6 SYGQSGGEQQSYSTYGNPGSQG-YGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSQSGYS 64
Query: 148 TETSNSGTLPQSSAVGSAFTQD--TRSLKTQLSQGRSSPQLDPLRKSPTMEQAVQTASAH 205
QSS + +++++ SQG +P D + + + S +
Sbjct: 65 QSYGGYENQKQSSYSQQPYNNQGQQQNMESSGSQGGRAPSYD--QPDYGQQDSYDQQSGY 122
Query: 206 LPAPAAVGRRSPVSTR-PLPSASQKAGENQEHRRAEVHKVSRPENEQLRNDNKRQVAPGA 264
+ +S + S +Q++ +Q + + R + + DN+ G
Sbjct: 123 DQHQGSYDEQSNYDQQHDSYSQNQQSYHSQRENYSHHTQDDRRDVSRYGEDNRGY---GG 179
Query: 265 PSAPRRGRGGH---------------RGGRGRFGIRRD-GPMKFEKDFDFESANAQFNKE 308
RGRGG+ RGG FG RD GP D D ES N+ N
Sbjct: 180 SQGGGRGRGGYDKDGRGPMTGSSGGDRGGFKNFGGHRDYGP---RTDADSESDNSDNNTI 236
Query: 309 EIDR-----------EFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNSEGNADEEDPL 357
+ EF ++ + + + + +N D+G E +DP
Sbjct: 237 FVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTG--KPKGEATVSFDDPP 294
Query: 358 GPNCYYD--KTKSFFDNISCDDNRERRPTWAEERRLNAETFGIPLRPNRGRGGYRGRGGL 415
D K F NI RRP E R G RGRGGYRGRGG
Sbjct: 295 SAKAAIDWFDGKEFHGNIIKVSFATRRP---EFMRGGGSGGG-----RRGRGGYRGRGGF 346
Query: 416 GFRGGRGRGGG-------------------------------------RGGTFTAPRGFR 438
RGG + G RG + RG+R
Sbjct: 347 QGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGRGYGGERGYR 406
Query: 439 GGFRGGRGG 447
G RGGRGG
Sbjct: 407 G--RGGRGG 413
Score = 42.4 bits (98), Expect = 0.001
Identities = 22/42 (52%), Positives = 24/42 (57%)
Query: 406 RGGYRGRGGLGFRGGRGRGGGRGGTFTAPRGFRGGFRGGRGG 447
RGGY G G G+ G RG GG G + RG GG RGG GG
Sbjct: 483 RGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGG 524
Score = 42.0 bits (97), Expect = 0.001
Identities = 25/45 (55%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 405 GRGGYRGRGGLGFRGGRG--RGGGRGGTFTAPRGFRGGFRGGRGG 447
G GG RG G G RGG G RGGG GG G RGG+ G RGG
Sbjct: 470 GYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGG 514
Score = 41.6 bits (96), Expect = 0.002
Identities = 54/185 (29%), Positives = 70/185 (37%), Gaps = 17/185 (9%)
Query: 263 GAPSAPRRGRGGHRGGRGRFGIRRDGPMKFEKDFDFESANAQFNKEEIDREFHNKLKLKE 322
G RRGRGG+RG RG F R P K D+ N R N
Sbjct: 328 GGSGGGRRGRGGYRG-RGGFQGRGGDP----KSGDWVCPNPSCGNMNFARR--NSCNQCN 380
Query: 323 DKLEKQEKPVNGEDKGDSGVDTQNSEGNADEEDPLGPNCYYDKTKSFFDNISCDDNRERR 382
+ + +P G+ +G + G G Y +S +R
Sbjct: 381 EPRPEDSRPSGGDFRGRGYGGERGYRGRGGRGGDRGG---YGGDRS---GGGYGGDRSSG 434
Query: 383 PTWAEERRLNAETFGIPLRPNRGRGGYRGRGGLGFRGGRGRGGGRGGTFTAPRGFRGGFR 442
++ +R + +G R G GG RG G G RGG G GG RGG + RG GG R
Sbjct: 435 GGYSGDR--SGGGYGGD-RSGGGYGGDRGGGYGGDRGG-GYGGDRGGGYGGDRGGYGGDR 490
Query: 443 GGRGG 447
GG G
Sbjct: 491 GGGYG 495
Score = 40.0 bits (92), Expect = 0.004
Identities = 24/42 (57%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 407 GGYRG-RGGLGFRGGRGRGGGRGGTFTAPRGFRGGFRGGRGG 447
GGY G RGG G G G GG RGG + RG GG RGG GG
Sbjct: 477 GGYGGDRGGYGGDRGGGYGGDRGG-YGGDRGGYGGDRGGYGG 517
Score = 39.3 bits (90), Expect = 0.008
Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 20/121 (16%)
Query: 335 EDKGDSGVDTQNSEGNADEEDPLGPNCYYDKTKSFFDNI-SCDDNRERRPTWAEERRLNA 393
+D D +G+ DE+ Y + S+ N S RE ++ R +
Sbjct: 113 QDSYDQQSGYDQHQGSYDEQSN-----YDQQHDSYSQNQQSYHSQRENYSHHTQDDRRDV 167
Query: 394 ETFGIPLRPNRGRGGYRGRGGLGFRGGRGRGG----GRGGTFTAPRGFRGGFRGGRGGRE 449
+G NRG GG +G GGRGRGG GRG + G RGGF+ G R+
Sbjct: 168 SRYG---EDNRGYGGSQG-------GGRGRGGYDKDGRGPMTGSSGGDRGGFKNFGGHRD 217
Query: 450 F 450
+
Sbjct: 218 Y 218
Score = 38.5 bits (88), Expect = 0.013
Identities = 21/41 (51%), Positives = 22/41 (53%)
Query: 405 GRGGYRGRGGLGFRGGRGRGGGRGGTFTAPRGFRGGFRGGR 445
G GG R G G R G G GG RGG + RG GG GGR
Sbjct: 540 GYGGDRSGGYGGDRSGGGYGGDRGGGYGGDRGGYGGKMGGR 580
Score = 38.1 bits (87), Expect = 0.017
Identities = 28/60 (46%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 403 NRGRGGYRG--RGGLGFRGGR--GRGGGR-GGTFTAPR-GFRGGFRGGRGGREFADFEYR 456
+R RGGY G GG G+ G R G GG R GG + R G GG RGG GG+ +YR
Sbjct: 525 DRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGGYGGDRGGYGGKMGGRNDYR 584
Score = 37.4 bits (85), Expect = 0.029
Identities = 24/43 (55%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 405 GRGGYRGRGGLGFRGGRGRGGGRGGTFTAPRGFRGGFRGGRGG 447
G GG RG G G RGG G GG RGG G GG RGG GG
Sbjct: 462 GYGGDRGGGYGGDRGG-GYGGDRGGYGGDRGGGYGGDRGGYGG 503
Score = 33.1 bits (74), Expect = 0.55
Identities = 25/44 (56%), Positives = 27/44 (61%), Gaps = 6/44 (13%)
Query: 406 RGGYRG-RGGLGF-RGGRGRGGGRGGTFTAPRGFRGGFRGGRGG 447
RGGY G RGG G RGG GG RGG + R RGG+ G RGG
Sbjct: 498 RGGYGGDRGGYGGDRGGY--GGDRGG-YGGDRS-RGGYGGDRGG 537
Score = 32.0 bits (71), Expect = 1.2
Identities = 20/42 (47%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 406 RGGYRGRGGLGFRGGRGRGGGRGGTFTAPRGFRGGFRGGRGG 447
RGGY G G G+ G R R GG GG G+ G GG GG
Sbjct: 512 RGGYGGDRG-GYGGDRSR-GGYGGDRGGGSGYGGDRSGGYGG 551
>gi|28875797 small protein rich in arginine and glycine [Homo
sapiens]
Length = 248
Score = 47.0 bits (110), Expect = 4e-05
Identities = 31/55 (56%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 397 GIPLRPNRG--RGGYRGRGGLGFRGGRGRGG-GRGGTFTAPRGFRGGFRGGRGGR 448
G + P G RGG RGRGG G RGG GRG GRGG RG G RGG GGR
Sbjct: 142 GRAVAPRMGLRRGGVRGRGGPG-RGGLGRGAMGRGGIGGRGRGMIGRGRGGFGGR 195
Score = 37.4 bits (85), Expect = 0.029
Identities = 28/48 (58%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
Query: 404 RGRGGYRGRGGLGFRGGRGRGG----GRGGTFTAPRGFRGGFRG-GRG 446
RGRGG GRGGLG RG GRGG GRG GF G RG GRG
Sbjct: 157 RGRGG-PGRGGLG-RGAMGRGGIGGRGRGMIGRGRGGFGGRGRGRGRG 202
Score = 33.5 bits (75), Expect = 0.42
Identities = 27/62 (43%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
Query: 390 RLNAETFGIPLRPNRGRGGY----RGRGGLGFRGGRGRGGGRGGTFTAPRGFRGGFRG-G 444
R+ G+ R GRGG GRGG+G RG G GRGG G RG RG G
Sbjct: 148 RMGLRRGGVRGRGGPGRGGLGRGAMGRGGIGGRGRGMIGRGRGGF-----GGRGRGRGRG 202
Query: 445 RG 446
RG
Sbjct: 203 RG 204
>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
Length = 589
Score = 47.0 bits (110), Expect = 4e-05
Identities = 104/437 (23%), Positives = 145/437 (33%), Gaps = 129/437 (29%)
Query: 109 GSYGPFG-RMPTYSQFSPSSLVGQQFGAVGVAGSSLTSFGTETSNSGTLPQS--SAVGSA 165
GSYG G +YS + G G A S + +G T +S S S+ G +
Sbjct: 5 GSYGQSGGEQQSYSTYGNPGSQGY-----GQASQSYSGYGQTTDSSYGQNYSGYSSYGQS 59
Query: 166 FTQDTRSLKTQLSQGRSSPQLDPLRKSPTMEQAVQTASAHLPAPAAVGRRSPVSTRP--- 222
++Q + Q S + + ME + + G R+P +P
Sbjct: 60 YSQSYGGYENQKQSSYSQQPYNNQGQQQNMESS-----------GSQGGRAPSYDQPDYG 108
Query: 223 -LPSASQKAGENQ------EHRRAEVHKVSRPENEQLRN-----------DNKRQVAP-- 262
S Q++G +Q E + S +N+Q + D++R V+
Sbjct: 109 QQDSYDQQSGYDQHQGSYDEQSNYDQQHDSYSQNQQSYHSQRENYSHHTQDDRRDVSRYG 168
Query: 263 ------GAPSAPRRGRGGH---------------RGGRGRFGIRRD-GPMKFEKDFDFES 300
G RGRGG+ RGG FG RD GP D D ES
Sbjct: 169 EDNRGYGGSQGGGRGRGGYDKDGRGPMTGSSGGDRGGFKNFGGHRDYGP---RTDADSES 225
Query: 301 ANAQFNKEEIDR-----------EFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNSEG 349
N+ N + EF ++ + + + + +N D+G E
Sbjct: 226 DNSDNNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTG--KPKGEA 283
Query: 350 NADEEDPLGPNCYYD--KTKSFFDNISCDDNRERRPTWAEERRLNAETFGIPLRPNRGRG 407
+DP D K F NI RRP E R G RGRG
Sbjct: 284 TVSFDDPPSAKAAIDWFDGKEFHGNIIKVSFATRRP---EFMRGGGSGGG-----RRGRG 335
Query: 408 GYRGRGGLGFRGGRGRGGG-------------------------------------RGGT 430
GYRGRGG RGG + G RG
Sbjct: 336 GYRGRGGFQGRGGDPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGGDFRGRG 395
Query: 431 FTAPRGFRGGFRGGRGG 447
+ RG+RG RGGRGG
Sbjct: 396 YGGERGYRG--RGGRGG 410
Score = 42.4 bits (98), Expect = 0.001
Identities = 22/42 (52%), Positives = 24/42 (57%)
Query: 406 RGGYRGRGGLGFRGGRGRGGGRGGTFTAPRGFRGGFRGGRGG 447
RGGY G G G+ G RG GG G + RG GG RGG GG
Sbjct: 480 RGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGGYGGDRGGYGG 521
Score = 42.0 bits (97), Expect = 0.001
Identities = 25/45 (55%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 405 GRGGYRGRGGLGFRGGRG--RGGGRGGTFTAPRGFRGGFRGGRGG 447
G GG RG G G RGG G RGGG GG G RGG+ G RGG
Sbjct: 467 GYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGDRGGYGGDRGG 511
Score = 41.6 bits (96), Expect = 0.002
Identities = 54/185 (29%), Positives = 70/185 (37%), Gaps = 17/185 (9%)
Query: 263 GAPSAPRRGRGGHRGGRGRFGIRRDGPMKFEKDFDFESANAQFNKEEIDREFHNKLKLKE 322
G RRGRGG+RG RG F R P K D+ N R N
Sbjct: 325 GGSGGGRRGRGGYRG-RGGFQGRGGDP----KSGDWVCPNPSCGNMNFARR--NSCNQCN 377
Query: 323 DKLEKQEKPVNGEDKGDSGVDTQNSEGNADEEDPLGPNCYYDKTKSFFDNISCDDNRERR 382
+ + +P G+ +G + G G Y +S +R
Sbjct: 378 EPRPEDSRPSGGDFRGRGYGGERGYRGRGGRGGDRGG---YGGDRS---GGGYGGDRSSG 431
Query: 383 PTWAEERRLNAETFGIPLRPNRGRGGYRGRGGLGFRGGRGRGGGRGGTFTAPRGFRGGFR 442
++ +R + +G R G GG RG G G RGG G GG RGG + RG GG R
Sbjct: 432 GGYSGDR--SGGGYGGD-RSGGGYGGDRGGGYGGDRGG-GYGGDRGGGYGGDRGGYGGDR 487
Query: 443 GGRGG 447
GG G
Sbjct: 488 GGGYG 492
Score = 40.0 bits (92), Expect = 0.004
Identities = 24/42 (57%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 407 GGYRG-RGGLGFRGGRGRGGGRGGTFTAPRGFRGGFRGGRGG 447
GGY G RGG G G G GG RGG + RG GG RGG GG
Sbjct: 474 GGYGGDRGGYGGDRGGGYGGDRGG-YGGDRGGYGGDRGGYGG 514
Score = 39.3 bits (90), Expect = 0.008
Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 20/121 (16%)
Query: 335 EDKGDSGVDTQNSEGNADEEDPLGPNCYYDKTKSFFDNI-SCDDNRERRPTWAEERRLNA 393
+D D +G+ DE+ Y + S+ N S RE ++ R +
Sbjct: 110 QDSYDQQSGYDQHQGSYDEQSN-----YDQQHDSYSQNQQSYHSQRENYSHHTQDDRRDV 164
Query: 394 ETFGIPLRPNRGRGGYRGRGGLGFRGGRGRGG----GRGGTFTAPRGFRGGFRGGRGGRE 449
+G NRG GG +G GGRGRGG GRG + G RGGF+ G R+
Sbjct: 165 SRYG---EDNRGYGGSQG-------GGRGRGGYDKDGRGPMTGSSGGDRGGFKNFGGHRD 214
Query: 450 F 450
+
Sbjct: 215 Y 215
Score = 38.5 bits (88), Expect = 0.013
Identities = 21/41 (51%), Positives = 22/41 (53%)
Query: 405 GRGGYRGRGGLGFRGGRGRGGGRGGTFTAPRGFRGGFRGGR 445
G GG R G G R G G GG RGG + RG GG GGR
Sbjct: 537 GYGGDRSGGYGGDRSGGGYGGDRGGGYGGDRGGYGGKMGGR 577
Score = 38.1 bits (87), Expect = 0.017
Identities = 28/60 (46%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 403 NRGRGGYRG--RGGLGFRGGR--GRGGGR-GGTFTAPR-GFRGGFRGGRGGREFADFEYR 456
+R RGGY G GG G+ G R G GG R GG + R G GG RGG GG+ +YR
Sbjct: 522 DRSRGGYGGDRGGGSGYGGDRSGGYGGDRSGGGYGGDRGGGYGGDRGGYGGKMGGRNDYR 581
Score = 37.4 bits (85), Expect = 0.029
Identities = 24/43 (55%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 405 GRGGYRGRGGLGFRGGRGRGGGRGGTFTAPRGFRGGFRGGRGG 447
G GG RG G G RGG G GG RGG G GG RGG GG
Sbjct: 459 GYGGDRGGGYGGDRGG-GYGGDRGGYGGDRGGGYGGDRGGYGG 500
Score = 33.1 bits (74), Expect = 0.55
Identities = 25/44 (56%), Positives = 27/44 (61%), Gaps = 6/44 (13%)
Query: 406 RGGYRG-RGGLGF-RGGRGRGGGRGGTFTAPRGFRGGFRGGRGG 447
RGGY G RGG G RGG GG RGG + R RGG+ G RGG
Sbjct: 495 RGGYGGDRGGYGGDRGGY--GGDRGG-YGGDRS-RGGYGGDRGG 534
Score = 32.0 bits (71), Expect = 1.2
Identities = 20/42 (47%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 406 RGGYRGRGGLGFRGGRGRGGGRGGTFTAPRGFRGGFRGGRGG 447
RGGY G G G+ G R R GG GG G+ G GG GG
Sbjct: 509 RGGYGGDRG-GYGGDRSR-GGYGGDRGGGSGYGGDRSGGYGG 548
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 47.0 bits (110), Expect = 4e-05
Identities = 55/203 (27%), Positives = 78/203 (38%), Gaps = 35/203 (17%)
Query: 270 RGRGGHRGGRG-----------RFGIRRDGPMKFEKDFDFESANAQFNKE-------EID 311
RGRGG RGGRG +FG RD + + + D N F + E
Sbjct: 242 RGRGGGRGGRGGMGGSDRGGFNKFGGPRDQGSRHDSEQDNSDNNTIFVQGLGENVTIESV 301
Query: 312 REFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNSEGNADEEDPLGPNCYYDKTKSFFD 371
++ ++ + + + + +N ++G E +DP D +FD
Sbjct: 302 ADYFKQIGIIKTNKKTGQPMINLYTDRETG--KLKGEATVSFDDPPSAKAAID----WFD 355
Query: 372 NISCDDNRERRPTWAEERRLNAETFGIPLRPNRGRGGYRGRGGLGFRGGRGRGGGRGGTF 431
N + RR + G R RGRGG GRGG G GG GGGRGG
Sbjct: 356 GKEFSGNPIK--VSFATRRADFNRGGGNGRGGRGRGGPMGRGGYG--GGGSGGGGRGG-- 409
Query: 432 TAPRGFRGGFRGGRGGREFADFE 454
F G GG G + D++
Sbjct: 410 -----FPSGGGGGGGQQRAGDWK 427
Score = 41.6 bits (96), Expect = 0.002
Identities = 30/64 (46%), Positives = 34/64 (53%), Gaps = 15/64 (23%)
Query: 403 NRGRGGYRGRGGLGF--RGGRGRG------GGRGGTFT------APRGFRGGFRGGRGGR 448
N+ + G G GG G RGGRGRG GG GG + PRG RGG RGGRGG
Sbjct: 196 NQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYEPRG-RGGGRGGRGGM 254
Query: 449 EFAD 452
+D
Sbjct: 255 GGSD 258
Score = 41.2 bits (95), Expect = 0.002
Identities = 24/55 (43%), Positives = 26/55 (47%)
Query: 399 PLRPNRGRGGYRGRGGLGFRGGRGRGGGRGGTFTAPRGFRGGFRGGRGGREFADF 453
P P G GG G G GRGG G + G RGGFRGGRGG + F
Sbjct: 452 PDGPGGGPGGSHMGGNYGDDRRGGRGGYDRGGYRGRGGDRGGFRGGRGGGDRGGF 506
Score = 38.9 bits (89), Expect = 0.010
Identities = 27/63 (42%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 396 FGIPLRPNRGRGGYRGRGGLGFRG---------GRGRGGGRGGTFTAPRGFRGGFRGGRG 446
+G R RGRGG G GG G G RGRGGGRGG RGGF G
Sbjct: 208 YGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYEPRGRGGGRGGRGGMGGSDRGGFNKFGG 267
Query: 447 GRE 449
R+
Sbjct: 268 PRD 270
Score = 37.7 bits (86), Expect = 0.022
Identities = 26/59 (44%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
Query: 405 GRGGY--RGRGGLGFRGGRGRGGGRGGTFTA------PRGFRGGF--RGGRGGREFADF 453
G GGY + RGG G G G GGG GG + PRG GG RGG GG + F
Sbjct: 204 GSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYEPRGRGGGRGGRGGMGGSDRGGF 262
Score = 30.0 bits (66), Expect = 4.6
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 405 GRGGYRGRGGLGFRGGRGRGGGRGGTFTAPRGFRGGF----RGGRG 446
G GG G+ G G GGG G + G GG+ RGGRG
Sbjct: 172 GGGGNYGQDQSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRG 217
>gi|109452587 family with sequence similarity 98, member B isoform 1
[Homo sapiens]
Length = 433
Score = 46.6 bits (109), Expect = 5e-05
Identities = 24/42 (57%), Positives = 26/42 (61%)
Query: 405 GRGGYRGRGGLGFRGGRGRGGGRGGTFTAPRGFRGGFRGGRG 446
GRGG+ G GG G RGG G GGGRGG G+ GG GG G
Sbjct: 334 GRGGWGGGGGGGGRGGGGGGGGRGGWGGGGGGWGGGGGGGGG 375
Score = 45.1 bits (105), Expect = 1e-04
Identities = 24/44 (54%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 405 GRGGYRGRGGLGFRGGRGRGGGRGGT-FTAPRGFRGGFRGGRGG 447
GRGG++GRG G RGG G GG GG + P G GG GG GG
Sbjct: 383 GRGGFQGRGDYGGRGGYGGRGGYGGRGYGDPYGGGGGGGGGGGG 426
Score = 42.7 bits (99), Expect = 7e-04
Identities = 23/43 (53%), Positives = 25/43 (58%)
Query: 405 GRGGYRGRGGLGFRGGRGRGGGRGGTFTAPRGFRGGFRGGRGG 447
G GG GRGG G GGRG GG GG + G GG+ GG GG
Sbjct: 340 GGGGGGGRGGGGGGGGRGGWGGGGGGWGGGGGGGGGWGGGGGG 382
Score = 40.8 bits (94), Expect = 0.003
Identities = 23/47 (48%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 404 RGRGGYRGRGGLGFRGGRGRGGGRGGTFTAPRGFRGGFRGGRGGREF 450
+GRG Y GRGG G RGG G G G G + G GG GG G R +
Sbjct: 388 QGRGDYGGRGGYGGRGGYG-GRGYGDPYGGGGGGGGGGGGGGGYRRY 433
Score = 40.0 bits (92), Expect = 0.004
Identities = 23/43 (53%), Positives = 24/43 (55%), Gaps = 8/43 (18%)
Query: 405 GRGGYRGRGGLGFRGGRGRGGGRGGTFTAPRGFRGGFRGGRGG 447
G GG G GG G GGRG GGG GG RGG+ GG GG
Sbjct: 331 GGGGRGGWGGGGGGGGRGGGGGGGG--------RGGWGGGGGG 365
Score = 39.7 bits (91), Expect = 0.006
Identities = 26/50 (52%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Query: 405 GRGGYRGRGGLGFRGGR--GRGGGRGGTFTAPRGFRGGFR-----GGRGG 447
G GG GRGG G GG G GGG GG G RGGF+ GGRGG
Sbjct: 349 GGGGGGGRGGWGGGGGGWGGGGGGGGGWGGGGGGGRGGFQGRGDYGGRGG 398
Score = 37.7 bits (86), Expect = 0.022
Identities = 24/50 (48%), Positives = 27/50 (54%), Gaps = 11/50 (22%)
Query: 405 GRGGYRGRGGLGFRGGRGRG--GGRGGTFTAPRGFRGGFRGGRGGREFAD 452
G GG+ G GG G G +GRG GGRGG G RGG GGR + D
Sbjct: 372 GGGGWGGGGGGGRGGFQGRGDYGGRGGY---------GGRGGYGGRGYGD 412
>gi|153791630 bromodomain and WD repeat domain containing 3 [Homo
sapiens]
Length = 1802
Score = 46.2 bits (108), Expect = 6e-05
Identities = 45/131 (34%), Positives = 58/131 (44%), Gaps = 10/131 (7%)
Query: 321 KEDKLEKQEKPVNGEDKGDSGVDTQNSEGNADEEDPLGPNC----YYDKTKSFFDNISCD 376
KE K K++ ++ + G+ G + + D + Y D + I
Sbjct: 1590 KEKKETKEKSHLSTSESGELGSSLSSESTCGSDSDSESTSRTDQDYVDGDHDYSKFIQTR 1649
Query: 377 DNRERRPTWAEERRLNAETFGIPLRPNRGRGGYRGRGGLGFRGGRGRGG-GRGGTFTAPR 435
R+ R +R N +T G R GR G RGG G RGGRGRG GRGG T R
Sbjct: 1650 PKRKLRKQHGNGKR-NWKTRGTGGRGRWGRWGRWSRGGRG-RGGRGRGSRGRGGGGTRGR 1707
Query: 436 GFRGGFRGGRG 446
G RG RGGRG
Sbjct: 1708 G-RG--RGGRG 1715
Score = 35.4 bits (80), Expect = 0.11
Identities = 25/43 (58%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Query: 401 RPNRGRGGY----RGRGGLGFRG-GRGRGGGRGGTFTAPRGFR 438
R RGRGG RGRGG G RG GRGR GGRG + A R R
Sbjct: 1684 RGGRGRGGRGRGSRGRGGGGTRGRGRGR-GGRGASRGATRAKR 1725
>gi|66346685 SERPINE1 mRNA binding protein 1 isoform 4 [Homo
sapiens]
Length = 387
Score = 44.7 bits (104), Expect = 2e-04
Identities = 57/199 (28%), Positives = 79/199 (39%), Gaps = 41/199 (20%)
Query: 268 PRRGRGG---HRGGRGRFGIRRDG-PMKFEKDFDFESANAQFNKEEIDRE----FHNKLK 319
P RGRGG RGGRGR R DG + +++FD S + + + D+ HN
Sbjct: 161 PIRGRGGLGRGRGGRGRGMGRGDGFDSRGKREFDRHSGSDRSGLKHEDKRGGSGSHNWGT 220
Query: 320 LKEDKLEKQEKPVNGE----DKGDSGVDTQNSEGNADEEDPLGPNCYY----------DK 365
+K++ + + V E ++ DT+N E +E GP D+
Sbjct: 221 VKDELTDLDQSNVTEETPEGEEHHPVADTENKENEVEEVKEEGPKEMTLDEWKAIQNKDR 280
Query: 366 TKSFFD----NISCDDNRER---------RPTWAEER------RLNAETFGIPLRPNRGR 406
K F+ N D ++ AE+ R A L N G
Sbjct: 281 AKVEFNIRKPNEGADGQWKKGFVLHKSKSEEAHAEDSVMDHHFRKPANDITSQLEINFGD 340
Query: 407 GGYRGRGGLGFRGGRGRGG 425
G GRGG G RGGRGRGG
Sbjct: 341 LGRPGRGGRGGRGGRGRGG 359
Score = 38.1 bits (87), Expect = 0.017
Identities = 37/88 (42%), Positives = 39/88 (44%), Gaps = 32/88 (36%)
Query: 376 DDNRERRPTWAEERRLNAETFGIPLRPNRGRGG------------YRGRGGLGF-RGGRG 422
D ERRP ERR F PL +G GG RGRGGLG RGGRG
Sbjct: 125 DRRPERRPP--RERR-----FEKPLE-EKGEGGEFSVDRPIIDRPIRGRGGLGRGRGGRG 176
Query: 423 RGGGRGGTFTAPRGFRGGFRGGRGGREF 450
RG GRG F + RG REF
Sbjct: 177 RGMGRGDGFDS-----------RGKREF 193
>gi|24308265 methyltransferase like 14 [Homo sapiens]
Length = 456
Score = 43.1 bits (100), Expect = 5e-04
Identities = 27/58 (46%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 399 PLRPNRGRGGYRGRGGLGFRGGRGRGGGRGGTFTAPRGFRGGFRGGRGGREFADFEYR 456
P + RGG RGG RGG G GR + RG RGGFRGGRGG F R
Sbjct: 401 PPKSKSDRGGGAPRGG--GRGGTSAGRGRERNRSNFRGERGGFRGGRGGAHRGGFPPR 456
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 43.1 bits (100), Expect = 5e-04
Identities = 43/112 (38%), Positives = 47/112 (41%), Gaps = 31/112 (27%)
Query: 345 QNSEGNADEEDPLGPNCYYDKTKSFFDNISCDDNRERRPTWAEERRLNAETFGIPLRPNR 404
Q E DEE+ +G Y D TK N+ RR R R +R
Sbjct: 200 QYGEYEGDEEEDMGKEDYDDFTKEL--------NQYRRAKEGSSRG----------RGSR 241
Query: 405 GRG-GYRGRGGLGFRGG-RGRGGGRGGTFTAPRGFRGGFRGGRGGREFADFE 454
GRG GYRGR G RGG RGRG GRG RG RG GG D E
Sbjct: 242 GRGRGYRGR---GSRGGSRGRGMGRGS--------RGRGRGSMGGDHPEDEE 282
Score = 37.4 bits (85), Expect = 0.029
Identities = 35/105 (33%), Positives = 45/105 (42%), Gaps = 29/105 (27%)
Query: 334 GEDKGDSGVDTQNSEGN--------ADEEDPLGPNCYYDKTKSFFDNISCDDNRERRPTW 385
G +G G D E + + E+P+G + Y D S + N+ RR
Sbjct: 267 GRGRGSMGGDHPEDEEDFYEEEMDYGESEEPMGDDDY--------DEYSKELNQYRRSKD 318
Query: 386 AEERRLNAETFGIPLRPNRGRG-GYRGRGGLGFRGGRGRGGGRGG 429
+ R L+ RGRG G RGRG G GRGRGG RGG
Sbjct: 319 SRGRGLS-----------RGRGRGSRGRGK-GMGRGRGRGGSRGG 351
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 42.0 bits (97), Expect = 0.001
Identities = 21/41 (51%), Positives = 23/41 (56%)
Query: 407 GGYRGRGGLGFRGGRGRGGGRGGTFTAPRGFRGGFRGGRGG 447
GGY GG G G G GGG GG + + G GGF GG GG
Sbjct: 103 GGYSSSGGFGGGFGGGSGGGFGGGYGSGFGGFGGFGGGAGG 143
Score = 41.6 bits (96), Expect = 0.002
Identities = 24/54 (44%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 395 TFGIPLRPNRGRGGYRGRGGLGFRGG-RGRGGGRGGTFTAPRGFRGGFRGGRGG 447
+FG G G G GF GG RG GG GG +++ GF GGF GG GG
Sbjct: 68 SFGYSYGGGSGGGFSASSLGGGFGGGSRGFGGASGGGYSSSGGFGGGFGGGSGG 121
Score = 41.6 bits (96), Expect = 0.002
Identities = 19/41 (46%), Positives = 22/41 (53%)
Query: 407 GGYRGRGGLGFRGGRGRGGGRGGTFTAPRGFRGGFRGGRGG 447
GG+ G G + GG G GGG GG + G RGG G GG
Sbjct: 548 GGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGSGGSHGG 588
Score = 40.8 bits (94), Expect = 0.003
Identities = 21/43 (48%), Positives = 22/43 (51%)
Query: 405 GRGGYRGRGGLGFRGGRGRGGGRGGTFTAPRGFRGGFRGGRGG 447
G GG GRG G GG GGG GG + G RGG G GG
Sbjct: 480 GSGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGGSYGG 522
Score = 38.9 bits (89), Expect = 0.010
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 405 GRGGYRGRGGLGFRGGRGRGGGRGGTFTAPRGFRGGFRGGRGGR 448
G+ G GRGG G GRG GG GG++ G GG+ GG G R
Sbjct: 471 GKIGLGGRGGSGGSYGRGSRGGSGGSY-GGGGSGGGYGGGSGSR 513
Score = 38.9 bits (89), Expect = 0.010
Identities = 21/45 (46%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 405 GRGGYRGRGGLG--FRGGRGRGGGRGGTFTAPRGFRGGFRGGRGG 447
G GG G GG G + GG G GG GG++ G GG GG GG
Sbjct: 492 GSGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGG 536
Score = 38.5 bits (88), Expect = 0.013
Identities = 21/43 (48%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 407 GGYRGRGGLGFRGGRGRG--GGRGGTFTAPRGFRGGFRGGRGG 447
GGY G G G GG G G GG GG + G GG GG GG
Sbjct: 532 GGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGG 574
Score = 35.8 bits (81), Expect = 0.084
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 405 GRGGYRGRGGLGFRGGRGRGGGRGGTFTAPRGFRGGFRGGRGG 447
G G RG G + GG G GGG GG G+ GG GG G
Sbjct: 508 GGSGSRGGSGGSYGGGSGSGGGSGG------GYGGGSGGGHSG 544
Score = 35.8 bits (81), Expect = 0.084
Identities = 20/47 (42%), Positives = 22/47 (46%)
Query: 405 GRGGYRGRGGLGFRGGRGRGGGRGGTFTAPRGFRGGFRGGRGGREFA 451
G G G G G+ GG G GG GG+ GF G G GG E A
Sbjct: 560 GGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGGEEA 606
Score = 31.2 bits (69), Expect = 2.1
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 11/61 (18%)
Query: 406 RGGYRGRGGLGFRGG---------RGRGGGRGGTFTAPRGFRGGFRG--GRGGREFADFE 454
R G G GGLG G GGG GG F++ G+ GG GRGG +
Sbjct: 13 RSGGGGGGGLGSGGSIRSSYSRFSSSGGGGGGGRFSSSSGYGGGSSRVCGRGGGGSFGYS 72
Query: 455 Y 455
Y
Sbjct: 73 Y 73
Score = 31.2 bits (69), Expect = 2.1
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 405 GRGGYRGRGGLGFRGGRGRGGGRGGTF---TAPRGFRGGFRGGRG 446
G G RG G GG G GG GG++ G GG+ GG G
Sbjct: 574 GGSGSRGGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSG 618
Score = 30.0 bits (66), Expect = 4.6
Identities = 20/39 (51%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 411 GRGGLGFRGGRGRGGGRGGTFTAPR---GFRGGFRGGRG 446
GRGG G G GGG GG F+A GF GG RG G
Sbjct: 62 GRGG-GGSFGYSYGGGSGGGFSASSLGGGFGGGSRGFGG 99
Score = 29.3 bits (64), Expect = 7.9
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 407 GGYRGRGGLGFRG----GRGRGGGRGGTFTA 433
GG+ G G GF G G G GGG GG TA
Sbjct: 121 GGFGGGYGSGFGGFGGFGGGAGGGDGGILTA 151
Score = 29.3 bits (64), Expect = 7.9
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 407 GGYRGRGGLGFRGGRGRGGGRGGTFTAPRGFRGGFRGGRGG 447
GG G GG G GG G G G G + + G GG G GG
Sbjct: 521 GGGSGSGG-GSGGGYGGGSGGGHSGGSGGGHSGGSGGNYGG 560
>gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 4 [Homo sapiens]
Length = 588
Score = 41.6 bits (96), Expect = 0.002
Identities = 27/53 (50%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 402 PNRGRGGYRGRGGLGF-RGGRG-RGGGRGGTFTAPRGFRGGFRGGRGGREFAD 452
P RGR GY RGG G RG RG RGG + RG RGG G GG+ AD
Sbjct: 481 PPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGVRGARGGRGGNVGGKRKAD 533
Score = 38.5 bits (88), Expect = 0.013
Identities = 28/53 (52%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 402 PNRGRGGY--RGRGGLGFRGG----RGRGGGRGGT-FTAPRGFRGGFRGGRGG 447
P+RGRG RGR G RGG RG G RGG RG RG RGGRGG
Sbjct: 473 PSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGVRGA-RGGRGG 524
Score = 35.0 bits (79), Expect = 0.14
Identities = 22/46 (47%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 408 GYRGRGGLGFRG-----GRGRGGGRGGTFTAPRGFRGGFRGGRGGR 448
G RGRGG G RG GRG RG + RG G RG RG R
Sbjct: 459 GARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGAR 504
>gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 1 [Homo sapiens]
Length = 623
Score = 41.6 bits (96), Expect = 0.002
Identities = 27/53 (50%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 402 PNRGRGGYRGRGGLGF-RGGRG-RGGGRGGTFTAPRGFRGGFRGGRGGREFAD 452
P RGR GY RGG G RG RG RGG + RG RGG G GG+ AD
Sbjct: 516 PPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGVRGARGGRGGNVGGKRKAD 568
Score = 38.5 bits (88), Expect = 0.013
Identities = 28/53 (52%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 402 PNRGRGGY--RGRGGLGFRGG----RGRGGGRGGT-FTAPRGFRGGFRGGRGG 447
P+RGRG RGR G RGG RG G RGG RG RG RGGRGG
Sbjct: 508 PSRGRGAAPPRGRAGYSQRGGPGSARGVRGARGGAQQQRGRGVRGA-RGGRGG 559
Score = 35.0 bits (79), Expect = 0.14
Identities = 22/46 (47%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 408 GYRGRGGLGFRG-----GRGRGGGRGGTFTAPRGFRGGFRGGRGGR 448
G RGRGG G RG GRG RG + RG G RG RG R
Sbjct: 494 GARGRGGRGARGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGAR 539
>gi|130502140 NEZHA isoform 2 [Homo sapiens]
Length = 1249
Score = 41.6 bits (96), Expect = 0.002
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 3/114 (2%)
Query: 179 QGRSSPQLDPLRKSPTMEQAVQTASAHLPAPAAVGRRSPVSTRPLPSASQKAGENQEHRR 238
+ R Q + K E+A + A P PA + P++T P P+A A E R+
Sbjct: 916 EARRRKQWQEVEKEQRREEAARLAQEEAPGPAPLVSAVPMAT-PAPAARAPAEEEVGPRK 974
Query: 239 AEVHKVSRPENEQLR--NDNKRQVAPGAPSAPRRGRGGHRGGRGRFGIRRDGPM 290
+ + QL+ +D + + P A + GRGG R R R G D +
Sbjct: 975 GDFTRQEYERRAQLKLMDDLDKVLRPRAAGSGGPGRGGRRATRPRSGCCDDSAL 1028
>gi|122937255 NEZHA isoform 1 [Homo sapiens]
Length = 1276
Score = 41.6 bits (96), Expect = 0.002
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 3/114 (2%)
Query: 179 QGRSSPQLDPLRKSPTMEQAVQTASAHLPAPAAVGRRSPVSTRPLPSASQKAGENQEHRR 238
+ R Q + K E+A + A P PA + P++T P P+A A E R+
Sbjct: 943 EARRRKQWQEVEKEQRREEAARLAQEEAPGPAPLVSAVPMAT-PAPAARAPAEEEVGPRK 1001
Query: 239 AEVHKVSRPENEQLR--NDNKRQVAPGAPSAPRRGRGGHRGGRGRFGIRRDGPM 290
+ + QL+ +D + + P A + GRGG R R R G D +
Sbjct: 1002 GDFTRQEYERRAQLKLMDDLDKVLRPRAAGSGGPGRGGRRATRPRSGCCDDSAL 1055
>gi|56699482 hypothetical protein LOC25940 [Homo sapiens]
Length = 518
Score = 41.2 bits (95), Expect = 0.002
Identities = 28/72 (38%), Positives = 32/72 (44%), Gaps = 14/72 (19%)
Query: 399 PLRPNRGRGGYRG---RGGLGFRGGRGRGGGRGGTFTAPRGFRGGFRGGR---------- 445
P + GRGG RG G RGG +GGGRGG G RGG RG +
Sbjct: 329 PQQQTGGRGGGRGGYEHSSYGGRGGHEQGGGRGGRGGYDHGGRGGGRGNKHQGGWTDGGS 388
Query: 446 -GGREFADFEYR 456
GG + D YR
Sbjct: 389 GGGGGYQDGGYR 400
Score = 37.7 bits (86), Expect = 0.022
Identities = 22/44 (50%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
Query: 407 GGYRGRGGLGFRGGRGRGGGRGGTFTAPRGFRGGFRGGRGGREF 450
GG+ G G G RGGRG GGRGG R +GG GGRG + +
Sbjct: 451 GGHHGDRG-GGRGGRGGRGGRGG-----RAGQGGGWGGRGSQNY 488
Score = 36.6 bits (83), Expect = 0.049
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 407 GGYRGRGGLGFRGGR-GRGGGRGGTFTAPRGFRGGFRGGRGGREFADFEYR 456
GG GRGG G RGGR G+GGG GG RG + +GG+ + F Y+
Sbjct: 459 GGRGGRGGRGGRGGRAGQGGGWGG-----RGSQNYHQGGQFEQHFQHGGYQ 504
Score = 31.6 bits (70), Expect = 1.6
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 10/52 (19%)
Query: 407 GGYRGRGGLGFRGGRGRGGG--RGGTFTAPR--------GFRGGFRGGRGGR 448
GGY+G G GF+ G +GG + G RGG RGGRGGR
Sbjct: 416 GGYQGGGYGGFQTSSSYTGSGYQGGGYQQDNRYQDGGHHGDRGGGRGGRGGR 467
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 40.8 bits (94), Expect = 0.003
Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 16/67 (23%)
Query: 405 GRGGYRGRGGLGFRGGRGRGGGR---------GGTFTAPRGFRGG-------FRGGRGGR 448
G GG R G RGGRGRGGGR GG + + G+ GG + GG GG
Sbjct: 182 GGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGS 241
Query: 449 EFADFEY 455
+ +Y
Sbjct: 242 SYGGSDY 248
Score = 32.0 bits (71), Expect = 1.2
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 405 GRGGYRGRGGLGFRGGRGR---GGGRGGTFTAPRGFRGGFRG 443
G GGY GG G GG G GGG GG+ + GF G
Sbjct: 213 GGGGYNSYGGYGGGGGGGYNAYGGGGGGSSYGGSDYGNGFGG 254
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 40.8 bits (94), Expect = 0.003
Identities = 74/378 (19%), Positives = 142/378 (37%), Gaps = 74/378 (19%)
Query: 80 PPKPQCSLPQDPAIVQSSLGSSTSSFQSMGSYGPFGRMPTYSQFSPSSLVGQQFGAVGVA 139
PP S P+ P+I+ +S F ++ + G G Q
Sbjct: 283 PPPSWASEPERPSILSASELKELDKFDNLDAEADEG------------WAGAQMEVDYTE 330
Query: 140 GSSLTSFGTETSNSGTLPQSSAVGSAFTQDTRSLKT--QLSQGRSSPQLD--------PL 189
+ + + SNS S GS +++ + K ++S +SS Q+ P
Sbjct: 331 QLNFSDDDEQGSNSPKENNSEDQGSKASENNENKKETDEVSNTKSSSQIPAQPSVAKVPY 390
Query: 190 RKSPTMEQAVQTASAHLPAPAAVGRRSPVSTR--------PLPSASQKAGENQ--EHRRA 239
K P+ Q T+S P P + ++ P R P PS Q A E++ + RR
Sbjct: 391 GKGPSFNQERGTSSHLPPPPKLLAQQHPPPDRQAVPGRPGPFPSKQQVADEDEIWKQRRR 450
Query: 240 EVHKVS--------RPENEQLRNDNKRQVA------------------PGAPSAPRRGRG 273
+ ++S R E E+ R + +R+ A P R R
Sbjct: 451 QQSEISAAVERARKRREEEERRMEEQRKAACAEKLKRLDEKLGILEKQPSPEEIRERERE 510
Query: 274 GHRGGRGRFGIRRDGPMKFEKDFDFESANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVN 333
R + ++ + EK+ + + Q ++E+++E + ++++++ +++EK +
Sbjct: 511 KEREREKE--LEKEQEQEREKEREKDRERQQEKEKELEKEQEKQREMEKERKQEKEKELE 568
Query: 334 GE---DKGDSGVDTQNSEGNADEE--------DPLGPNCYYDKTKSFFDNISCDDNRERR 382
+ +K + Q E ++E +P PN K +N SC N+E
Sbjct: 569 RQKEKEKELQKMKEQEKECELEKEREKLEEKIEPREPNLEPMVEKQESEN-SC--NKEEE 625
Query: 383 PTWAEERRLNAETFGIPL 400
P + + +E P+
Sbjct: 626 PVFTRQDSNRSEKEATPV 643
Score = 32.0 bits (71), Expect = 1.2
Identities = 20/34 (58%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 404 RGRGGY--RGRGGLGFRGGRGRGGGRGGTFTAPR 435
RGRG Y RGR G GGRGR GGRG T P+
Sbjct: 1188 RGRGEYYSRGRSYRGSYGGRGR-GGRGHTRDYPQ 1220
Score = 31.6 bits (70), Expect = 1.6
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 138 VAGSSLTSFGTETSNSGTLPQSS---AVGSAFTQDTRSLKTQLSQGRSSPQLDPLRKS-- 192
V S L S S ++P S+ A+ S+ + T + S+P + S
Sbjct: 1801 VPASPLAPVSASASVSASVPASTSAAAITSSSAPASAPAPTPILASVSTPASVTILASAS 1860
Query: 193 -PTMEQAVQTASAHLPAPAAVGRRSPVSTRPLPSAS 227
P + A+ + SA PAPAA +PV T P AS
Sbjct: 1861 IPILASALASTSAPTPAPAASSPAAPVITAPTIPAS 1896
Score = 29.6 bits (65), Expect = 6.0
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 423 RGGGRGGTFTAPRGFRGGFRG-GRGGR 448
RG GRG ++ R +RG + G GRGGR
Sbjct: 1186 RGRGRGEYYSRGRSYRGSYGGRGRGGR 1212
Score = 29.3 bits (64), Expect = 7.9
Identities = 64/295 (21%), Positives = 109/295 (36%), Gaps = 66/295 (22%)
Query: 169 DTRSLKTQLSQGRSSPQLDPLRKSPTMEQAVQTASAH-LPAPAAVGRRSP--------VS 219
+T +L + SQ P L+P+ + +E AV+T + + AP + P V
Sbjct: 1091 ETATLAQKPSQDTEKP-LEPV-STVQVEPAVKTVNQQTMAAPVVKEEKQPEKVISKDLVI 1148
Query: 220 TRPLPSASQKAGENQEHRRAEVHKVSRPENEQLRNDNKRQVAPGAPSAPRRGRGGHRGGR 279
RP P S+ A + + + E + + R G + R G GGR
Sbjct: 1149 ERPRPD-SRPAVKKESTLPPRTYWKEARERDWFPDQGYRGRGRGEYYSRGRSYRGSYGGR 1207
Query: 280 GRFGI--RRD----------------GPMKFEKDFDFESANAQF-----------NKEEI 310
GR G RD GP++ ++ + S ++ F ++ +
Sbjct: 1208 GRGGRGHTRDYPQYRDNKPRAEHIPSGPLRQREESETRSESSDFEVVPKRRRQRGSETDT 1267
Query: 311 DREFHNKLKLKEDKLEKQEKPVNGEDKGDSGVDTQNSEGNADEEDPLGPNCYYDKTKSFF 370
D E H K D L K + P E + + P+ P+ +
Sbjct: 1268 DSEIHESASDK-DSLSKGKLP--------------KREERPENKKPVKPHSSFKPD---- 1308
Query: 371 DNISCDDNRERRPTWAEERRLNAETFGIPLRPNRGRGGYRGRGGLGFRGGRGRGG 425
+++ D+ +P ++ + A+ +P +G RGRGG RGGR GG
Sbjct: 1309 NHVRIDNRLLEKPYVRDDDK--AKPGFLP----KGEPTRRGRGGTFRRGGRDPGG 1357
>gi|14141161 heterogeneous nuclear ribonucleoprotein U isoform b
[Homo sapiens]
Length = 806
Score = 40.4 bits (93), Expect = 0.003
Identities = 25/49 (51%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 403 NRGRGGYRGRGGLGFRGGRGRGG--GRGGTFTAPRGF--RGGFRGGRGG 447
NRG GG+RGRGG RGG RGG G G + RGG GG GG
Sbjct: 682 NRG-GGHRGRGGFNMRGGNFRGGAPGNRGGYNRRGNMPQRGGGGGGSGG 729
>gi|74136883 heterogeneous nuclear ribonucleoprotein U isoform a
[Homo sapiens]
Length = 825
Score = 40.4 bits (93), Expect = 0.003
Identities = 25/49 (51%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 403 NRGRGGYRGRGGLGFRGGRGRGG--GRGGTFTAPRGF--RGGFRGGRGG 447
NRG GG+RGRGG RGG RGG G G + RGG GG GG
Sbjct: 701 NRG-GGHRGRGGFNMRGGNFRGGAPGNRGGYNRRGNMPQRGGGGGGSGG 748
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.134 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,936,452
Number of Sequences: 37866
Number of extensions: 1196060
Number of successful extensions: 9088
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 326
Number of HSP's that attempted gapping in prelim test: 6237
Number of HSP's gapped (non-prelim): 2085
length of query: 463
length of database: 18,247,518
effective HSP length: 106
effective length of query: 357
effective length of database: 14,233,722
effective search space: 5081438754
effective search space used: 5081438754
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.