Guide to the Human Genome
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Name: SERBP1 Sequence: fasta or formatted (387aa) NCBI GI: 66346685
Description:

SERPINE1 mRNA binding protein 1 isoform 4

Not currently referenced in the text

Other entries for this name:
alt prot {408aa} SERPINE1 mRNA binding protein 1 isoform 1
alt prot {402aa} SERPINE1 mRNA binding protein 1 isoform 2
alt prot {393aa} SERPINE1 mRNA binding protein 1 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         24           3
 C cysteine            0.3          1           1
 D aspartate           7.8         30           2
 E glutamate          10.6         41           2
 F phenylalanine       3.4         13           1
 G glycine            14.5         56           4
 H histidine           2.6         10           2
 I isoleucine          2.6         10           2
 K lysine              8.5         33           3
 L leucine             4.4         17           1
 M methionine          1.0          4           1
 N asparagine          3.9         15           1
 P proline             6.5         25           2
 Q glutamine           3.6         14           2
 R arginine           10.3         40           2
 S serine              5.4         21           2
 T threonine           2.8         11           1
 V valine              4.9         19           2
 W tryptophan          0.8          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SERPINE1 mRNA binding protein 1 isoform 4 
SERBP1                0.991   SERPINE1 mRNA binding protein 1 isoform 3 
SERBP1                0.987   SERPINE1 mRNA binding protein 1 isoform 2 
SERBP1                0.978   SERPINE1 mRNA binding protein 1 isoform 1 
HABP4                 0.303   hyaluronan binding protein 4 
RPGR                  0.039   retinitis pigmentosa GTPase regulator isoform C [Hom...
TAF15                 0.030   TBP-associated factor 15 isoform 2 
TAF15                 0.030   TBP-associated factor 15 isoform 1 
FUS                   0.028   fusion (involved in t(12;16) in malignant liposarcoma...
BAT2                  0.023   HLA-B associated transcript-2 
BRWD3                 0.022   bromodomain and WD repeat domain containing 3 [Homo...
AVEN                  0.021   cell death regulator aven 
AIM1                  0.021   absent in melanoma 1 
BAT2D1                0.021   HBxAg transactivated protein 2 
LOC100292370          0.019   PREDICTED: hypothetical protein 
GAR1                  0.019   nucleolar protein family A, member 1 
GAR1                  0.019   nucleolar protein family A, member 1 
HDGF2                 0.019   hepatoma-derived growth factor-related protein 2 iso...
HDGF2                 0.019   hepatoma-derived growth factor-related protein 2 iso...
CDC2L2                0.019   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.019   cell division cycle 2-like 2 isoform 1 
CDC2L1                0.019   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.019   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.019   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.019   cell division cycle 2-like 1 (PITSLRE proteins) isof...
LOC728650             0.018   PREDICTED: hypothetical protein 
DIDO1                 0.018   death inducer-obliterator 1 isoform c 
USP17L7               0.018   PREDICTED: Inactive ubiquitin carboxyl-terminal hyd...
LOC100131455          0.018   PREDICTED: hypothetical protein 
USP17L7               0.018   PREDICTED: Inactive ubiquitin carboxyl-terminal hyd...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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