Guide to the Human Genome
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Name: LSM14A Sequence: fasta or formatted (463aa) NCBI GI: 166197710
Description:

LSM14 homolog A isoform b

Referenced in:

RNases and RNA Stability

Other entries for this name:
alt prot [463aa] LSM14 homolog A isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         29           2
 C cysteine            0.9          4           1
 D aspartate           5.6         26           2
 E glutamate           6.9         32           2
 F phenylalanine       5.2         24           2
 G glycine            12.3         57           3
 H histidine           1.1          5           1
 I isoleucine          3.2         15           2
 K lysine              5.2         24           1
 L leucine             5.0         23           1
 M methionine          1.1          5           1
 N asparagine          3.9         18           1
 P proline             7.3         34           2
 Q glutamine           4.5         21           2
 R arginine           10.2         47           2
 S serine              9.7         45           2
 T threonine           5.4         25           1
 V valine              3.9         18           1
 W tryptophan          0.2          1           1
 Y tyrosine            2.2         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   LSM14 homolog A isoform b 
LSM14A                0.988   LSM14 homolog A isoform a 
LSM14B                0.347   LSM14 homolog B 
EWSR1                 0.032   Ewing sarcoma breakpoint region 1 isoform 4 
GAR1                  0.032   nucleolar protein family A, member 1 
GAR1                  0.032   nucleolar protein family A, member 1 
NCL                   0.028   nucleolin 
EWSR1                 0.027   Ewing sarcoma breakpoint region 1 isoform 2 
EWSR1                 0.027   Ewing sarcoma breakpoint region 1 isoform 3 
EWSR1                 0.027   Ewing sarcoma breakpoint region 1 isoform 1 
FBL                   0.027   fibrillarin 
TAF15                 0.024   TBP-associated factor 15 isoform 1 
C1orf77               0.024   small protein rich in arginine and glycine 
TAF15                 0.024   TBP-associated factor 15 isoform 2 
FUS                   0.024   fusion (involved in t(12;16) in malignant liposarcoma...
FAM98B                0.024   family with sequence similarity 98, member B isofor...
BRWD3                 0.023   bromodomain and WD repeat domain containing 3 [Homo...
SERBP1                0.022   SERPINE1 mRNA binding protein 1 isoform 4 
SYNCRIP               0.021   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.021   synaptotagmin binding, cytoplasmic RNA interacting ...
METTL14               0.020   methyltransferase like 14 
ZC3H4                 0.020   zinc finger CCCH-type containing 4 
KRT9                  0.019   keratin 9 
KIAA1543              0.019   NEZHA isoform 2 
KIAA1543              0.019   NEZHA isoform 1 
FAM98A                0.017   hypothetical protein LOC25940 
HNRNPA0               0.017   heterogeneous nuclear ribonucleoprotein A0 
BAT2D1                0.017   HBxAg transactivated protein 2 
HNRNPU                0.016   heterogeneous nuclear ribonucleoprotein U isoform b ...
HNRNPU                0.016   heterogeneous nuclear ribonucleoprotein U isoform a ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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