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Search of human proteins with 166197696
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|166197696 hypothetical protein LOC128344 [Homo sapiens]
(191 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|166197696 hypothetical protein LOC128344 [Homo sapiens] 415 e-116
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 32 0.25
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 32 0.25
gi|4826649 mitochondrial ribosomal protein L49 [Homo sapiens] 31 0.57
gi|4557014 catalase [Homo sapiens] 30 0.97
gi|150170670 piccolo isoform 2 [Homo sapiens] 30 0.97
gi|150378539 piccolo isoform 1 [Homo sapiens] 30 0.97
gi|32698984 outer dense fiber of sperm tails 3-like 2 [Homo sapi... 30 1.7
gi|15721939 metastatic lymph node 51 [Homo sapiens] 30 1.7
gi|37620206 hypothetical protein LOC148423 [Homo sapiens] 29 2.2
gi|24041035 notch 2 preproprotein [Homo sapiens] 29 2.8
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 28 3.7
gi|148833508 notch1 preproprotein [Homo sapiens] 28 4.8
gi|124378039 SEC16 homolog A [Homo sapiens] 28 4.8
gi|239754046 PREDICTED: similar to hCG1654959 [Homo sapiens] 28 4.8
gi|239748575 PREDICTED: similar to hCG1654959 [Homo sapiens] 28 4.8
gi|239742592 PREDICTED: similar to hCG1654959 [Homo sapiens] 28 4.8
gi|119943096 dopamine receptor interacting protein [Homo sapiens] 28 4.8
gi|17136078 VGF nerve growth factor inducible precursor [Homo sa... 28 4.8
gi|188595677 integrin, beta 2 precursor [Homo sapiens] 28 6.3
gi|89191865 integrin, beta 2 precursor [Homo sapiens] 28 6.3
gi|38492356 DNA-directed DNA polymerase delta 3 [Homo sapiens] 28 6.3
gi|13699256 protein phosphatase 1 regulatory inhibitor subunit 8... 28 6.3
gi|20336239 protein phosphatase 1 regulatory inhibitor subunit 8... 28 6.3
gi|4506015 protein phosphatase 1 regulatory inhibitor subunit 8 ... 28 6.3
gi|31982906 cingulin-like 1 [Homo sapiens] 28 6.3
gi|187936955 HHIP-like protein 1 isoform a [Homo sapiens] 27 8.2
>gi|166197696 hypothetical protein LOC128344 [Homo sapiens]
Length = 191
Score = 415 bits (1067), Expect = e-116
Identities = 191/191 (100%), Positives = 191/191 (100%)
Query: 1 MCFSRADAADNYPFGTCQQRKLFPHFHPPNLIGNKFVPLRGSPHRGPGCYFSDGYGLAYD 60
MCFSRADAADNYPFGTCQQRKLFPHFHPPNLIGNKFVPLRGSPHRGPGCYFSDGYGLAYD
Sbjct: 1 MCFSRADAADNYPFGTCQQRKLFPHFHPPNLIGNKFVPLRGSPHRGPGCYFSDGYGLAYD 60
Query: 61 LSKIPTSIKGYTLGARTAVRFKPIQKEMTPHAGRYQKVSPQQEKHKQNFAPFNVLVPRFK 120
LSKIPTSIKGYTLGARTAVRFKPIQKEMTPHAGRYQKVSPQQEKHKQNFAPFNVLVPRFK
Sbjct: 61 LSKIPTSIKGYTLGARTAVRFKPIQKEMTPHAGRYQKVSPQQEKHKQNFAPFNVLVPRFK 120
Query: 121 NYPKDTYYPSPGAYNPEKKPPPKIAWPMKFGSPDWAQVPCLQKRTLKAELSTDKDFRKHR 180
NYPKDTYYPSPGAYNPEKKPPPKIAWPMKFGSPDWAQVPCLQKRTLKAELSTDKDFRKHR
Sbjct: 121 NYPKDTYYPSPGAYNPEKKPPPKIAWPMKFGSPDWAQVPCLQKRTLKAELSTDKDFRKHR 180
Query: 181 NRVAYLSLYYN 191
NRVAYLSLYYN
Sbjct: 181 NRVAYLSLYYN 191
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 32.3 bits (72), Expect = 0.25
Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 6/96 (6%)
Query: 83 PIQKEMTPHAGRYQKVSPQQEKHKQNFAPFNVLVPRFKNYPKDTYYP--SPGAYNPEKKP 140
P+Q +P A VSP Q AP ++ P + P P SP A P + P
Sbjct: 447 PVQAPFSPPAS--PPVSPSATPPSQ--APPSLAAPPLQVPPSPPASPPMSPSATPPPQAP 502
Query: 141 PPKIAWPMKFGSPDWAQVPCLQKRTLKAELSTDKDF 176
PP A P++ P P L L+A S F
Sbjct: 503 PPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASF 538
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 32.3 bits (72), Expect = 0.25
Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 6/96 (6%)
Query: 83 PIQKEMTPHAGRYQKVSPQQEKHKQNFAPFNVLVPRFKNYPKDTYYP--SPGAYNPEKKP 140
P+Q +P A VSP Q AP ++ P + P P SP A P + P
Sbjct: 408 PVQAPFSPPAS--PPVSPSATPPSQ--APPSLAAPPLQVPPSPPASPPMSPSATPPPQAP 463
Query: 141 PPKIAWPMKFGSPDWAQVPCLQKRTLKAELSTDKDF 176
PP A P++ P P L L+A S F
Sbjct: 464 PPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASF 499
>gi|4826649 mitochondrial ribosomal protein L49 [Homo sapiens]
Length = 166
Score = 31.2 bits (69), Expect = 0.57
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 118 RFKNYPKDTYYPSPGAYNPEKKPPPKIAW 146
R + PK +YP+P + P + PPP + +
Sbjct: 56 RIPDPPKHEHYPTPSGWQPPRDPPPNLPY 84
>gi|4557014 catalase [Homo sapiens]
Length = 527
Score = 30.4 bits (67), Expect = 0.97
Identities = 33/153 (21%), Positives = 56/153 (36%), Gaps = 35/153 (22%)
Query: 9 ADNYPFGTCQQRKLFPHFHPPNLIGNKFVPLRGSPHRGPGCYFSDGYGLAYDLSKIPTSI 68
A+ +PF K++PH P + K V +R P YF++ +A+D S +P I
Sbjct: 289 AETFPFNPFDLTKVWPHKDYPLIPVGKLVL-----NRNPVNYFAEVEQIAFDPSNMPPGI 343
Query: 69 KGYTLGARTAVRFKPIQKEMTPHAGRYQKVSPQQEKHKQNFAPFNVLVP-------RFKN 121
E +P ++ + H+ P + +P R N
Sbjct: 344 ------------------EASPDKMLQGRLFAYPDTHRHRLGPNYLHIPVNCPYRARVAN 385
Query: 122 YPKDTYYPSPGAYNPEKKPPPKIAWPMKFGSPD 154
Y +D P + P +P FG+P+
Sbjct: 386 YQRD----GPMCMQDNQGGAPNY-YPNSFGAPE 413
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 30.4 bits (67), Expect = 0.97
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 115 LVPRFKNYPKDTYYP----SPG-----AYNPEKKPPPKIAWPMKFGSPDWAQVPCLQKRT 165
L P PK Y P SPG A+ P +KP P P K PD A+VP +T
Sbjct: 3612 LAPSPPKSPKVLYSPISPLSPGKALESAFVPYEKPLPDDISPQKVLHPDMAKVPPASPKT 3671
Query: 166 LK 167
K
Sbjct: 3672 AK 3673
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 30.4 bits (67), Expect = 0.97
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 115 LVPRFKNYPKDTYYP----SPG-----AYNPEKKPPPKIAWPMKFGSPDWAQVPCLQKRT 165
L P PK Y P SPG A+ P +KP P P K PD A+VP +T
Sbjct: 3612 LAPSPPKSPKVLYSPISPLSPGKALESAFVPYEKPLPDDISPQKVLHPDMAKVPPASPKT 3671
Query: 166 LK 167
K
Sbjct: 3672 AK 3673
>gi|32698984 outer dense fiber of sperm tails 3-like 2 [Homo
sapiens]
Length = 289
Score = 29.6 bits (65), Expect = 1.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 129 PSPGAYNPEKKPPPKIAWPMKF 150
P PGAY+PEK PP + P F
Sbjct: 122 PGPGAYSPEKVPPVRHRTPPAF 143
>gi|15721939 metastatic lymph node 51 [Homo sapiens]
Length = 703
Score = 29.6 bits (65), Expect = 1.7
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 90 PHAGRYQ---KVSPQQEKHKQNFAPFNVLVPRFKNYPKDTYYPSPGAYNPEKKPPPKIAW 146
P+ G Y +SP Q +Q AP P N+ +Y +PGA P PPP +
Sbjct: 595 PNPGLYPPPVSMSPGQPPPQQLLAPTYFSAPGVMNFGNPSYPYAPGALPP---PPPPHLY 651
Query: 147 P 147
P
Sbjct: 652 P 652
>gi|37620206 hypothetical protein LOC148423 [Homo sapiens]
Length = 182
Score = 29.3 bits (64), Expect = 2.2
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 124 KDTYYPSPGAYNPEKKPPP 142
K Y P P Y EKKPPP
Sbjct: 101 KSNYVPPPETYTTEKKPPP 119
>gi|24041035 notch 2 preproprotein [Homo sapiens]
Length = 2471
Score = 28.9 bits (63), Expect = 2.8
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 88 MTPHAGRYQKVSPQQE--KHKQNFAPFNVLVP--RFKNYPKDTYYPSPGAYNPEKKPPPK 143
+ P G + ++PQ + K P L P F+ PK + GA P+ PP
Sbjct: 2272 LAPAEGTHPGIAPQSRPPEGKHITTPREPLPPIVTFQLIPKGSIAQPAGAPQPQSTCPPA 2331
Query: 144 IAWPM--KFGSPDWAQVP 159
+A P+ + P+ A++P
Sbjct: 2332 VAGPLPTMYQIPEMARLP 2349
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 28.5 bits (62), Expect = 3.7
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 65 PTSIKGYTLGARTAVRFKPIQKEMTPHAGRYQKVSPQQEKHKQNFAP----FNVLVPRFK 120
PTS K YT T+ + P E TP + +Y SP+ ++P ++ P++
Sbjct: 1834 PTSPK-YT---PTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKY- 1888
Query: 121 NYPKDTYYPSPGAYNP 136
+ TY P+ Y P
Sbjct: 1889 SPTSPTYSPTSPVYTP 1904
>gi|148833508 notch1 preproprotein [Homo sapiens]
Length = 2555
Score = 28.1 bits (61), Expect = 4.8
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 31 LIGNKFVPLRGSPHRGPGCYFSDGYGLAYDL-SKIPTSIKGYTLGARTAVRFKPIQKEMT 89
++ N++ PLRGS PG + L + + + +S+ L + + P + T
Sbjct: 2318 MVPNQYNPLRGSV--APGPLSTQAPSLQHGMVGPLHSSLAASALSQMMSYQGLPSTRLAT 2375
Query: 90 -PHAGRYQKVSPQQ-EKHKQNFAPFNV 114
PH + Q+V PQ + +QN P N+
Sbjct: 2376 QPHLVQTQQVQPQNLQMQQQNLQPANI 2402
>gi|124378039 SEC16 homolog A [Homo sapiens]
Length = 2357
Score = 28.1 bits (61), Expect = 4.8
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 8/46 (17%)
Query: 115 LVPRFKNYPKDTYYPSPGAYNPEKKPPPKIAWPMKFGSPD---WAQ 157
++P P DT YP+P EK+P + P+K SP WAQ
Sbjct: 688 MLPHAGAPPLDTVYPAP-----EKRPSARTQGPVKCESPATTLWAQ 728
>gi|239754046 PREDICTED: similar to hCG1654959 [Homo sapiens]
Length = 104
Score = 28.1 bits (61), Expect = 4.8
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 75 ARTAVRFKPIQKEMTPHAGRYQKVSPQQEKHKQNFAPFNVLVPRFKNYPK 124
AR + + +++ P A +QK +P + H +N F VL R + K
Sbjct: 17 ARDPLETEQREEDTFPEAQMFQKPAPHSQSHPKNALEFGVLKKREEGLSK 66
>gi|239748575 PREDICTED: similar to hCG1654959 [Homo sapiens]
Length = 104
Score = 28.1 bits (61), Expect = 4.8
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 75 ARTAVRFKPIQKEMTPHAGRYQKVSPQQEKHKQNFAPFNVLVPRFKNYPK 124
AR + + +++ P A +QK +P + H +N F VL R + K
Sbjct: 17 ARDPLETEQREEDTFPEAQMFQKPAPHSQSHPKNALEFGVLKKREEGLSK 66
>gi|239742592 PREDICTED: similar to hCG1654959 [Homo sapiens]
Length = 104
Score = 28.1 bits (61), Expect = 4.8
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 75 ARTAVRFKPIQKEMTPHAGRYQKVSPQQEKHKQNFAPFNVLVPRFKNYPK 124
AR + + +++ P A +QK +P + H +N F VL R + K
Sbjct: 17 ARDPLETEQREEDTFPEAQMFQKPAPHSQSHPKNALEFGVLKKREEGLSK 66
>gi|119943096 dopamine receptor interacting protein [Homo sapiens]
Length = 702
Score = 28.1 bits (61), Expect = 4.8
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 123 PKDTYYPSPGAY-NPEKKPPPKIAWPMKFGSPDWAQVPCLQKRTLKAELSTDKDFRKHRN 181
PK T +P+P + +P PP P PD ++ ++ + ELS + + ++
Sbjct: 59 PKHTQHPNPAHWLDPSHGPPGGPGPPRDAEDPDQSETSSEEESGVDQELSKENETGNQKD 118
Query: 182 RVAYLSL 188
++LS+
Sbjct: 119 GNSFLSI 125
>gi|17136078 VGF nerve growth factor inducible precursor [Homo
sapiens]
Length = 615
Score = 28.1 bits (61), Expect = 4.8
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 101 QQEKHKQNFAPFNVLVPRFKNYPKDTYYPSPGAYNPEKKPPPKIAWPMKFGSPDWAQV 158
++ K K+N P V PR P T+ SP +PPP P + PDW +V
Sbjct: 478 EKRKRKKNAPPEPVPPPRAA--PAPTHVRSP-------QPPPPAPAPARDELPDWNEV 526
>gi|188595677 integrin, beta 2 precursor [Homo sapiens]
Length = 769
Score = 27.7 bits (60), Expect = 6.3
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 91 HAGRYQKVSPQQEK---HKQNFAPFNVLVPRFKNYPKDTYY 128
H G +++SPQ+ A FNV R K YP D YY
Sbjct: 91 HNGGQKQLSPQKVTLYLRPGQAAAFNVTFRRAKGYPIDLYY 131
>gi|89191865 integrin, beta 2 precursor [Homo sapiens]
Length = 769
Score = 27.7 bits (60), Expect = 6.3
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 91 HAGRYQKVSPQQEK---HKQNFAPFNVLVPRFKNYPKDTYY 128
H G +++SPQ+ A FNV R K YP D YY
Sbjct: 91 HNGGQKQLSPQKVTLYLRPGQAAAFNVTFRRAKGYPIDLYY 131
>gi|38492356 DNA-directed DNA polymerase delta 3 [Homo sapiens]
Length = 466
Score = 27.7 bits (60), Expect = 6.3
Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 11/122 (9%)
Query: 70 GYTLGARTAVRFKPIQKEMTPHAGRYQKVSPQQEKHKQNFAPFN--VLVPRFKNYPKDTY 127
G ++ A K +QKE G+ +S + K +N + +P + + +
Sbjct: 280 GLKKSSKKAEPVKVLQKEKK--RGKRVALSDDETKETENMRKKRRRIKLPESDSSEDEVF 337
Query: 128 YPSPGAYNPEKKPPPKIAWPMKFGSPDWAQVPCLQKRTLKAELSTDKDFRKHRNRVAYLS 187
SPGAY E PP SP VP + + S+ ++ RK R RV
Sbjct: 338 PDSPGAYEAESPSPPPPP------SPPLEPVPKTEPEPPSVKSSSGENKRK-RKRVLKSK 390
Query: 188 LY 189
Y
Sbjct: 391 TY 392
>gi|13699256 protein phosphatase 1 regulatory inhibitor subunit 8
isoform alpha [Homo sapiens]
Length = 351
Score = 27.7 bits (60), Expect = 6.3
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 108 NFAPFNVLVPRFKNYPKDTYYPSPGAYNPE------KKPPPKIAWPMKFGSP 153
N AP L P + P+P YNPE KK K AWP K +P
Sbjct: 296 NLAPDVDLTPVVPSAVNMNPAPNPAVYNPEAVNEPKKKKYAKEAWPGKKPTP 347
>gi|20336239 protein phosphatase 1 regulatory inhibitor subunit 8
isoform beta/delta [Homo sapiens]
Length = 209
Score = 27.7 bits (60), Expect = 6.3
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 108 NFAPFNVLVPRFKNYPKDTYYPSPGAYNPE------KKPPPKIAWPMKFGSP 153
N AP L P + P+P YNPE KK K AWP K +P
Sbjct: 154 NLAPDVDLTPVVPSAVNMNPAPNPAVYNPEAVNEPKKKKYAKEAWPGKKPTP 205
>gi|4506015 protein phosphatase 1 regulatory inhibitor subunit 8
isoform gamma [Homo sapiens]
Length = 127
Score = 27.7 bits (60), Expect = 6.3
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 6/52 (11%)
Query: 108 NFAPFNVLVPRFKNYPKDTYYPSPGAYNPE------KKPPPKIAWPMKFGSP 153
N AP L P + P+P YNPE KK K AWP K +P
Sbjct: 72 NLAPDVDLTPVVPSAVNMNPAPNPAVYNPEAVNEPKKKKYAKEAWPGKKPTP 123
>gi|31982906 cingulin-like 1 [Homo sapiens]
Length = 1302
Score = 27.7 bits (60), Expect = 6.3
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 13 PFGTCQQRKLFPHFHPPNLIGNKFVPLRGSPHRGPGCYFS-------DGYGLAYDLSKIP 65
P C QR L +G F L+G+ H G C S DG L + S+
Sbjct: 421 PSQVCPQRPLSQERRGKQSVGRTFAKLQGAAH-GASCAHSRPPQPNIDGKVLETEGSQES 479
Query: 66 TSIKGYTLGART 77
T I+ +LGA++
Sbjct: 480 TVIRAPSLGAQS 491
>gi|187936955 HHIP-like protein 1 isoform a [Homo sapiens]
Length = 782
Score = 27.3 bits (59), Expect = 8.2
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 75 ARTAVRFKPIQKEMTPHAGRYQKVSPQQEKHKQNFAPFNVLVPRFKNYPKDTYYPSPGAY 134
A V +K I G+ Q + P Q K + PF VP+ K PK P P A
Sbjct: 564 APRGVVYKIIDASRRAPPGKCQ-IQPAQVKIRSRLIPF---VPKEKFIPKTRSTPRPTAR 619
Query: 135 NPEKKP 140
P + P
Sbjct: 620 APTRAP 625
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.138 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,311,954
Number of Sequences: 37866
Number of extensions: 481956
Number of successful extensions: 1229
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1203
Number of HSP's gapped (non-prelim): 41
length of query: 191
length of database: 18,247,518
effective HSP length: 96
effective length of query: 95
effective length of database: 14,612,382
effective search space: 1388176290
effective search space used: 1388176290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.