Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC389300 Sequence: fasta or formatted (104aa) NCBI GI: 239754046
Description:

PREDICTED: similar to hCG1654959

Not currently referenced in the text

Other entries for this name:
alt mRNA {104aa} PREDICTED: similar to hCG1654959
alt mRNA {104aa} PREDICTED: similar to hCG1654959
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         12           2
 C cysteine            2.9          3           1
 D aspartate           3.8          4           1
 E glutamate           7.7          8           2
 F phenylalanine       3.8          4           1
 G glycine             6.7          7           1
 H histidine           4.8          5           1
 I isoleucine          1.9          2           2
 K lysine              6.7          7           2
 L leucine             7.7          8           1
 M methionine          2.9          3           1
 N asparagine          1.9          2           1
 P proline             9.6         10           1
 Q glutamine           6.7          7           1
 R arginine            5.8          6           1
 S serine              6.7          7           1
 T threonine           5.8          6           1
 V valine              1.0          1           1
 W tryptophan          1.9          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1654959 
LOC389300             1.000   PREDICTED: similar to hCG1654959 
LOC389300             1.000   PREDICTED: similar to hCG1654959 
TOE1                  0.030   target of EGR1, member 1 (nuclear) 
PTPN21                0.025   protein tyrosine phosphatase, non-receptor type 21 ...
CPEB4                 0.025   cytoplasmic polyadenylation element binding protein...
TMEM91                0.020   transmembrane protein 91 isoform a 
TMEM91                0.020   transmembrane protein 91 isoform b 
TMEM91                0.020   transmembrane protein 91 isoform d 
TMEM91                0.020   transmembrane protein 91 isoform c 
TMEM91                0.020   transmembrane protein 91 isoform c 
TMEM91                0.020   transmembrane protein 91 isoform e 
FAM160B1              0.020   hypothetical protein LOC57700 isoform b 
FAM160B1              0.020   hypothetical protein LOC57700 isoform a 
ARHGEF5               0.015   rho guanine nucleotide exchange factor 5 
C1orf88               0.015   hypothetical protein LOC128344 
UBAP2                 0.010   ubiquitin associated protein 2 
CKAP4                 0.010   cytoskeleton-associated protein 4 
POLR1A                0.010   DNA-directed RNA polymerase I A 
ZCCHC5                0.005   zinc finger, CCHC domain containing 5 
ATAD2                 0.005   ATPase family, AAA domain containing 2 
FAM132B               0.005   PREDICTED: family with sequence similarity 132, mem...
FAM132B               0.005   PREDICTED: hypothetical protein LOC151176 
LFNG                  0.005   lunatic fringe isoform a 
EDC4                  0.005   autoantigen RCD8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press