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Search of human proteins with 164607156
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|164607156 axonemal dynein light chain 1 [Homo sapiens]
(190 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|164607156 axonemal dynein light chain 1 [Homo sapiens] 380 e-106
gi|239752518 PREDICTED: similar to leucine rich repeat containin... 64 6e-11
gi|66472382 nischarin [Homo sapiens] 64 6e-11
gi|194272228 leucine rich repeat containing 48 isoform b [Homo s... 64 8e-11
gi|194272226 leucine rich repeat containing 48 isoform b [Homo s... 64 8e-11
gi|194272224 leucine rich repeat containing 48 isoform a [Homo s... 64 8e-11
gi|194272222 leucine rich repeat containing 48 isoform a [Homo s... 64 8e-11
gi|55743114 leucine rich repeat containing 49 [Homo sapiens] 64 8e-11
gi|4506013 protein phosphatase 1, regulatory subunit 7 [Homo sap... 63 1e-10
gi|21389483 leucine-rich repeats and guanylate kinase domain con... 58 6e-09
gi|206725447 leucine rich repeat containing 23 isoform a [Homo s... 57 1e-08
gi|42542396 leucine rich repeat containing 23 isoform a [Homo sa... 57 1e-08
gi|157674358 leucine rich repeat containing 50 [Homo sapiens] 52 2e-07
gi|39930571 leucine rich repeat containing 56 [Homo sapiens] 51 5e-07
gi|61966709 leucine rich repeat containing 67 [Homo sapiens] 50 9e-07
gi|15529980 leucine rich repeat containing 46 [Homo sapiens] 50 2e-06
gi|117414162 sodium channel associated protein 2 isoform a [Homo... 48 6e-06
gi|120953300 leucine-rich repeats and IQ motif containing 1 isof... 45 4e-05
gi|120953243 leucine-rich repeats and IQ motif containing 1 isof... 45 4e-05
gi|50593002 small nuclear ribonucleoprotein polypeptide A' [Homo... 45 5e-05
gi|62241040 leucine rich repeat containing 8 family, member A [H... 44 1e-04
gi|187829877 leucine rich repeat containing 8 family, member A [... 44 1e-04
gi|187829871 leucine rich repeat containing 8 family, member A [... 44 1e-04
gi|31377705 centrosomal protein 97kDa [Homo sapiens] 44 1e-04
gi|194239701 tubulin folding cofactor E-like [Homo sapiens] 43 2e-04
gi|194239699 tubulin folding cofactor E-like [Homo sapiens] 43 2e-04
gi|87298937 centrosomal protein 110kDa [Homo sapiens] 43 2e-04
gi|238908508 leucine-rich repeat and death domain-containing pro... 42 2e-04
gi|149773484 leucine rich repeat and fibronectin type III domain... 42 2e-04
gi|53828918 Rab geranylgeranyltransferase alpha [Homo sapiens] 41 5e-04
>gi|164607156 axonemal dynein light chain 1 [Homo sapiens]
Length = 190
Score = 380 bits (976), Expect = e-106
Identities = 190/190 (100%), Positives = 190/190 (100%)
Query: 1 MAKATTIKEALARWEEKTGQRPSEAKEIKLYAQIPPIEKMDASLSMLANCEKLSLSTNCI 60
MAKATTIKEALARWEEKTGQRPSEAKEIKLYAQIPPIEKMDASLSMLANCEKLSLSTNCI
Sbjct: 1 MAKATTIKEALARWEEKTGQRPSEAKEIKLYAQIPPIEKMDASLSMLANCEKLSLSTNCI 60
Query: 61 EKIANLNGLKNLRILSLGRNNIKNLNGLEAVGDTLEELWISYNFIEKLKGIHIMKKLKIL 120
EKIANLNGLKNLRILSLGRNNIKNLNGLEAVGDTLEELWISYNFIEKLKGIHIMKKLKIL
Sbjct: 61 EKIANLNGLKNLRILSLGRNNIKNLNGLEAVGDTLEELWISYNFIEKLKGIHIMKKLKIL 120
Query: 121 YMSNNLVKDWAEFVKLAELPCLEDLVFVGNPLEEKHSAENNWIEEATKRVPKLKKLDGTP 180
YMSNNLVKDWAEFVKLAELPCLEDLVFVGNPLEEKHSAENNWIEEATKRVPKLKKLDGTP
Sbjct: 121 YMSNNLVKDWAEFVKLAELPCLEDLVFVGNPLEEKHSAENNWIEEATKRVPKLKKLDGTP 180
Query: 181 VIKGDEEEDN 190
VIKGDEEEDN
Sbjct: 181 VIKGDEEEDN 190
>gi|239752518 PREDICTED: similar to leucine rich repeat containing
50, partial [Homo sapiens]
Length = 489
Score = 64.3 bits (155), Expect = 6e-11
Identities = 48/153 (31%), Positives = 82/153 (53%), Gaps = 14/153 (9%)
Query: 46 MLANCEKLSLSTNCIEKIANLNGLKNLRILSLGRN---NIKNLNGLEAVGDTLEELWISY 102
M +N + L L N I KI N+N L LR+L+L RN ++ NLNGL D+L EL + +
Sbjct: 1 MSSNLDVLDLHGNQITKIENINHLCELRVLNLARNFLSHVDNLNGL----DSLTELNLRH 56
Query: 103 NFIEKLKGIHIMKKLKILYMSNNLVKDWAEFVKLAELPCLEDLVFVGNPLEE----KHSA 158
N I ++ + + L+ L++S N + + LA+ L D+ F GNP+ + KH+
Sbjct: 57 NQITFVRDVDNLPCLQHLFLSFNNISSFDSVSCLADSSSLSDITFDGNPIAQESWYKHTV 116
Query: 159 ENNWIEEA---TKRVPKLKKLDGTPVIKGDEEE 188
N ++ KR+ + ++ + + K +EE+
Sbjct: 117 LQNMMQLRQLDMKRITEEERRMASVLAKKEEEK 149
>gi|66472382 nischarin [Homo sapiens]
Length = 1504
Score = 64.3 bits (155), Expect = 6e-11
Identities = 37/116 (31%), Positives = 60/116 (51%)
Query: 37 IEKMDASLSMLANCEKLSLSTNCIEKIANLNGLKNLRILSLGRNNIKNLNGLEAVGDTLE 96
I ++D S+ ++ E L LS N + + NL L NL L L N + +L GL ++
Sbjct: 299 ISEIDESVKLIPKIEFLDLSHNGLLVVDNLQHLYNLVHLDLSYNKLSSLEGLHTKLGNIK 358
Query: 97 ELWISYNFIEKLKGIHIMKKLKILYMSNNLVKDWAEFVKLAELPCLEDLVFVGNPL 152
L ++ N +E L G+H + L L + +N ++ E + LPCLE + + NPL
Sbjct: 359 TLNLAGNLLESLSGLHKLYSLVNLDLRDNRIEQMEEVRSIGSLPCLEHVSLLNNPL 414
>gi|194272228 leucine rich repeat containing 48 isoform b [Homo
sapiens]
Length = 457
Score = 63.9 bits (154), Expect = 8e-11
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 43 SLSMLANCEKLSLSTNCIEKIANLNGLKNLRILSLGRNNIKNLNGLEAVGDTLEELWISY 102
+L N KL L N IEKI L L +L L L NNI+ + GL+ + + LE+L +
Sbjct: 60 NLWQFENLRKLQLDNNIIEKIEGLENLAHLVWLDLSFNNIETIEGLDTLVN-LEDLSLFN 118
Query: 103 NFIEKLKGIHIMKKLKILYMSNNLVKDWAEFVKLAELPCLEDLVFVGNPLEE 154
N I K+ + + KL++L + NN + + + L CL L NP+ E
Sbjct: 119 NRISKIDSLDALVKLQVLSLGNNRIDNMMNIIYLRRFKCLRTLSLSRNPISE 170
>gi|194272226 leucine rich repeat containing 48 isoform b [Homo
sapiens]
Length = 457
Score = 63.9 bits (154), Expect = 8e-11
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 43 SLSMLANCEKLSLSTNCIEKIANLNGLKNLRILSLGRNNIKNLNGLEAVGDTLEELWISY 102
+L N KL L N IEKI L L +L L L NNI+ + GL+ + + LE+L +
Sbjct: 60 NLWQFENLRKLQLDNNIIEKIEGLENLAHLVWLDLSFNNIETIEGLDTLVN-LEDLSLFN 118
Query: 103 NFIEKLKGIHIMKKLKILYMSNNLVKDWAEFVKLAELPCLEDLVFVGNPLEE 154
N I K+ + + KL++L + NN + + + L CL L NP+ E
Sbjct: 119 NRISKIDSLDALVKLQVLSLGNNRIDNMMNIIYLRRFKCLRTLSLSRNPISE 170
>gi|194272224 leucine rich repeat containing 48 isoform a [Homo
sapiens]
Length = 523
Score = 63.9 bits (154), Expect = 8e-11
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 43 SLSMLANCEKLSLSTNCIEKIANLNGLKNLRILSLGRNNIKNLNGLEAVGDTLEELWISY 102
+L N KL L N IEKI L L +L L L NNI+ + GL+ + + LE+L +
Sbjct: 60 NLWQFENLRKLQLDNNIIEKIEGLENLAHLVWLDLSFNNIETIEGLDTLVN-LEDLSLFN 118
Query: 103 NFIEKLKGIHIMKKLKILYMSNNLVKDWAEFVKLAELPCLEDLVFVGNPLEE 154
N I K+ + + KL++L + NN + + + L CL L NP+ E
Sbjct: 119 NRISKIDSLDALVKLQVLSLGNNRIDNMMNIIYLRRFKCLRTLSLSRNPISE 170
>gi|194272222 leucine rich repeat containing 48 isoform a [Homo
sapiens]
Length = 523
Score = 63.9 bits (154), Expect = 8e-11
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 43 SLSMLANCEKLSLSTNCIEKIANLNGLKNLRILSLGRNNIKNLNGLEAVGDTLEELWISY 102
+L N KL L N IEKI L L +L L L NNI+ + GL+ + + LE+L +
Sbjct: 60 NLWQFENLRKLQLDNNIIEKIEGLENLAHLVWLDLSFNNIETIEGLDTLVN-LEDLSLFN 118
Query: 103 NFIEKLKGIHIMKKLKILYMSNNLVKDWAEFVKLAELPCLEDLVFVGNPLEE 154
N I K+ + + KL++L + NN + + + L CL L NP+ E
Sbjct: 119 NRISKIDSLDALVKLQVLSLGNNRIDNMMNIIYLRRFKCLRTLSLSRNPISE 170
>gi|55743114 leucine rich repeat containing 49 [Homo sapiens]
Length = 686
Score = 63.9 bits (154), Expect = 8e-11
Identities = 49/160 (30%), Positives = 85/160 (53%), Gaps = 14/160 (8%)
Query: 39 KMDASLSMLANCEKLSLSTNCIEKIANLNGLKNLRILSLGRN---NIKNLNGLEAVGDTL 95
K ++L L + + L L N I KI N+N L LR+L+L RN ++ NLNGL D+L
Sbjct: 169 KKISNLENLKSLDVLDLHGNQITKIENINHLCELRVLNLARNFLSHVDNLNGL----DSL 224
Query: 96 EELWISYNFIEKLKGIHIMKKLKILYMSNNLVKDWAEFVKLAELPCLEDLVFVGNPLEE- 154
EL + +N I ++ + + L+ L++S N + + LA+ L D+ F GNP+ +
Sbjct: 225 TELNLRHNQITFVRDVDNLPCLQHLFLSFNNISSFDSVSCLADSSSLSDITFDGNPIAQE 284
Query: 155 ---KHSAENNWIEEA---TKRVPKLKKLDGTPVIKGDEEE 188
KH+ N ++ KR+ + ++ + + K +EE+
Sbjct: 285 SWYKHTVLQNMMQLRQLDMKRITEEERRMASVLAKKEEEK 324
Score = 47.8 bits (112), Expect = 6e-06
Identities = 29/85 (34%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 43 SLSMLANCEKLSLSTNCIEKIANLNGLKNLRILSLGRNNIKNLNGLEAVGDTLEELWISY 102
++S L L L N IE+I+ L+ L+ LR+L LG+N IK ++ LE + +L+ L +
Sbjct: 129 NISNLQKLISLDLYDNQIEEISGLSTLRCLRVLLLGKNRIKKISNLENL-KSLDVLDLHG 187
Query: 103 NFIEKLKGIHIMKKLKILYMSNNLV 127
N I K++ I+ + +L++L ++ N +
Sbjct: 188 NQITKIENINHLCELRVLNLARNFL 212
>gi|4506013 protein phosphatase 1, regulatory subunit 7 [Homo
sapiens]
Length = 360
Score = 63.2 bits (152), Expect = 1e-10
Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 31/169 (18%)
Query: 33 QIPPIEKMDASLSMLANCEKLSLSTNCIEKIANLNGLKNLRILSLGRNNIKNLNGLEAVG 92
+I IE +D L N E L L N I K+ NL+ L NL +LS+ N + + GL+ +
Sbjct: 197 RIRAIENIDT----LTNLESLFLGKNKITKLQNLDALTNLTVLSMQSNRLTKIEGLQNLV 252
Query: 93 DTLEELWISYNFIEKLKGIHIMKKLKIL----------------------YMSNNLVKDW 130
+ L EL++S+N IE ++G+ KL +L +M++NL++ W
Sbjct: 253 N-LRELYLSHNGIEVIEGLENNNKLTMLDIASNRIKKIENISHLTELQEFWMNDNLLESW 311
Query: 131 AEFVKLAELPCLEDLVFVGNPLEEKHSAENNWIEEATKRVPKLKKLDGT 179
++ +L LE + NPL++ + + + +P ++++D T
Sbjct: 312 SDLDELKGARSLETVYLERNPLQK----DPQYRRKVMLALPSVRQIDAT 356
Score = 61.6 bits (148), Expect = 4e-10
Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 17/167 (10%)
Query: 23 SEAKEIKLYAQIPPIEKMDASLSMLANCE---------KLSLSTNCIEKIANLNGLKNLR 73
++ K+I+ + +E +D S ++L N E KL L N I KI NL+ L L+
Sbjct: 130 NQIKKIENLEALTELEILDISFNLLRNIEGVDKLTRLKKLFLVNNKISKIENLSNLHQLQ 189
Query: 74 ILSLGRNNIKNLNGLEAVGDTLEELWISYNFIEKLKGIHIMKKLKILYMSNNLVKDWAEF 133
+L LG N I+ + ++ + LE L++ N I KL+ + + L +L M +N + +
Sbjct: 190 MLELGSNRIRAIENIDTL-TNLESLFLGKNKITKLQNLDALTNLTVLSMQSNRL---TKI 245
Query: 134 VKLAELPCLEDLVFVGNPLEEKHSAENN----WIEEATKRVPKLKKL 176
L L L +L N +E ENN ++ A+ R+ K++ +
Sbjct: 246 EGLQNLVNLRELYLSHNGIEVIEGLENNNKLTMLDIASNRIKKIENI 292
Score = 48.1 bits (113), Expect = 4e-06
Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 6/121 (4%)
Query: 24 EAKEIKL-YAQIPPIEKMDASLSMLANCEKLSLSTNCIEKIANLNGLKNLRILSLGRNNI 82
+A+++ L + +I IE + + C + +L CIE + L++LR L L N I
Sbjct: 77 DAEDVDLNHYRIGKIEGFEVLKKVKTLCLRQNL-IKCIENLEE---LQSLRELDLYDNQI 132
Query: 83 KNLNGLEAVGDTLEELWISYNFIEKLKGIHIMKKLKILYMSNNLVKDWAEFVKLAELPCL 142
K + LEA+ + LE L IS+N + ++G+ + +LK L++ NN + L +L L
Sbjct: 133 KKIENLEALTE-LEILDISFNLLRNIEGVDKLTRLKKLFLVNNKISKIENLSNLHQLQML 191
Query: 143 E 143
E
Sbjct: 192 E 192
Score = 30.8 bits (68), Expect = 0.73
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 96 EELWISYNFIEKLKGIHIMKKLKILYMSNNLVKDWAEFVKLAELPCLEDLVFVGNPLEEK 155
E++ +++ I K++G ++KK+K L + NL+K L EL L +L N +++
Sbjct: 79 EDVDLNHYRIGKIEGFEVLKKVKTLCLRQNLIKC---IENLEELQSLRELDLYDNQIKKI 135
Query: 156 HSAE 159
+ E
Sbjct: 136 ENLE 139
>gi|21389483 leucine-rich repeats and guanylate kinase domain
containing [Homo sapiens]
Length = 825
Score = 57.8 bits (138), Expect = 6e-09
Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 42 ASLSMLANCEKLSLSTNCIEKIANLNGLKNL--RILSLGRNNIKNLNGLEAVGDTLEELW 99
+ L M N LSL+ N KI +NGL L +IL L N I+ + GLE + L+ L
Sbjct: 231 SGLEMCNNLIHLSLANN---KITTINGLNKLPIKILCLSNNQIEMITGLEDL-KALQNLD 286
Query: 100 ISYNFIEKLKGIHIMKKLKILYMSNNLVKDWAEFVKLAELPCLEDLVFVGNPLEEK 155
+S+N I L+G+ L+++ + +N + + E + LP L L + NP++EK
Sbjct: 287 LSHNQISSLQGLENHDLLEVINLEDNKIAELREIEYIKNLPILRVLNLLENPIQEK 342
Score = 34.3 bits (77), Expect = 0.066
Identities = 47/207 (22%), Positives = 95/207 (45%), Gaps = 26/207 (12%)
Query: 8 KEALARWEEKTGQRPSEAKEIKLYAQIPPIEKMDAS-LSMLANCEKLSLSTNCIEKIANL 66
+EA+A+ G+ S +++ L + +D S L + +KL LS N IE ++ +
Sbjct: 108 EEAVAKALHHLGRSGSGTEQVYLNLTLSGCNLIDVSILCGYVHLQKLDLSANKIEDLSCV 167
Query: 67 NGLKNLRILSLGRNNI---------KNL-------NGLEAVGD-----TLEELWISYNFI 105
+ + L L+ +NN+ KNL N + + D L +L + N I
Sbjct: 168 SCMPYLLELNASQNNLTTFFNFKPPKNLKKADFSHNQISEICDLSAYHALTKLILDGNEI 227
Query: 106 EKLKGIHIMKKLKILYMSNNLVKDWAEFVKL-AELPCL-EDLVFVGNPLEEKHSAENNWI 163
E++ G+ + L L ++NN + KL ++ CL + + + LE+ + +N +
Sbjct: 228 EEISGLEMCNNLIHLSLANNKITTINGLNKLPIKILCLSNNQIEMITGLEDLKALQN--L 285
Query: 164 EEATKRVPKLKKLDGTPVIKGDEEEDN 190
+ + ++ L+ L+ +++ EDN
Sbjct: 286 DLSHNQISSLQGLENHDLLEVINLEDN 312
>gi|206725447 leucine rich repeat containing 23 isoform a [Homo
sapiens]
Length = 343
Score = 57.0 bits (136), Expect = 1e-08
Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 7/132 (5%)
Query: 47 LANCEKLSLSTNCIEKIANLNGLKNLRILSLGRNNIKNLNGLEAVGDTLEELWISYNFIE 106
L + + L N +E +N L L+ L L +N +K + GLE + + L L + N I+
Sbjct: 178 LISLHTVELRGNQLESTLGIN-LPKLKNLYLAQNMLKKVEGLEDLSN-LTTLHLRDNQID 235
Query: 107 KLKGI-HIMKKLKILYMSNNLVKDWAEFVKLAELPCLEDLVFVGNPLEEKHSAENNWIEE 165
L G MK L+ L + N+V + E KL +LP L LV + NP + E ++ +E
Sbjct: 236 TLSGFSREMKSLQYLNLRGNMVANLGELAKLRDLPKLRALVLLDNPCTD----ETSYRQE 291
Query: 166 ATKRVPKLKKLD 177
A ++P L++LD
Sbjct: 292 ALVQMPYLERLD 303
>gi|42542396 leucine rich repeat containing 23 isoform a [Homo
sapiens]
Length = 343
Score = 57.0 bits (136), Expect = 1e-08
Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 7/132 (5%)
Query: 47 LANCEKLSLSTNCIEKIANLNGLKNLRILSLGRNNIKNLNGLEAVGDTLEELWISYNFIE 106
L + + L N +E +N L L+ L L +N +K + GLE + + L L + N I+
Sbjct: 178 LISLHTVELRGNQLESTLGIN-LPKLKNLYLAQNMLKKVEGLEDLSN-LTTLHLRDNQID 235
Query: 107 KLKGI-HIMKKLKILYMSNNLVKDWAEFVKLAELPCLEDLVFVGNPLEEKHSAENNWIEE 165
L G MK L+ L + N+V + E KL +LP L LV + NP + E ++ +E
Sbjct: 236 TLSGFSREMKSLQYLNLRGNMVANLGELAKLRDLPKLRALVLLDNPCTD----ETSYRQE 291
Query: 166 ATKRVPKLKKLD 177
A ++P L++LD
Sbjct: 292 ALVQMPYLERLD 303
>gi|157674358 leucine rich repeat containing 50 [Homo sapiens]
Length = 725
Score = 52.4 bits (124), Expect = 2e-07
Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 15/174 (8%)
Query: 15 EEKTGQRPSEAKEIKLYAQIPPIEKMDASLSMLANCEKLSLSTNCIEKIANLNGLKNLRI 74
EE TG R L+ Q I+K++ +L L L N + KI NL L+ L
Sbjct: 126 EEYTGLRC-------LWLQSNGIQKIE-NLEAQTELRCLFLQMNLLRKIENLEPLQKLDA 177
Query: 75 LSLGRNNIKNLNGLEAVGDTLEELWISYNFIEKLKGIHIMK---KLKILYMSNNLVKDWA 131
L+L N IK + L + L L +++N +E ++ I ++ +L +L +S+N + D
Sbjct: 178 LNLSNNYIKTIENLSCL-PVLNTLQMAHNHLETVEDIQHLQECLRLCVLDLSHNKLSDPE 236
Query: 132 EFVKLAELPCLEDLVFVGNPLEEKHSAENNWIEEATKRVPKLKKLDGTPVIKGD 185
L +P L L +GNP+ + N+ T R+ L LD PV D
Sbjct: 237 ILSILESMPDLRVLNLMGNPVIRQIP---NYRRTVTVRLKHLTYLDDRPVFPKD 287
Score = 28.9 bits (63), Expect = 2.8
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 78 GRNNIKNLNGLEAVGDTLEELWISYNFIEKLKGIHIMKKLKILYMSNNLVKDWAEFVKLA 137
G + I+NL E G L LW+ N I+K++ + +L+ L++ NL++ L
Sbjct: 118 GFDRIENLE--EYTG--LRCLWLQSNGIQKIENLEAQTELRCLFLQMNLLRKIENLEPLQ 173
Query: 138 ELPCL 142
+L L
Sbjct: 174 KLDAL 178
>gi|39930571 leucine rich repeat containing 56 [Homo sapiens]
Length = 542
Score = 51.2 bits (121), Expect = 5e-07
Identities = 40/143 (27%), Positives = 73/143 (51%), Gaps = 10/143 (6%)
Query: 47 LANCEKLSLSTNCIEKIANLN-GLKNLRILSLGRNNIKNLNGLEAVGDTLEELWISYNFI 105
L N ++L L+ + + + +L L +L++L L R + +L+G+ ++ L+EL+ SYN I
Sbjct: 92 LPNLDQLKLNGSHLGSLRDLGTSLGHLQVLWLARCGLADLDGIASL-PALKELYASYNNI 150
Query: 106 EKLKGIHIMKKLKILYMSNNLVKDWAEFVKLAELPCLEDLVFVGNPL--------EEKHS 157
L + ++++L++L + N V+D + L P L L GN + K
Sbjct: 151 SDLSPLCLLEQLEVLDLEGNSVEDLGQVRYLQLCPRLAMLTLEGNLVCLQPAPGPTNKVP 210
Query: 158 AENNWIEEATKRVPKLKKLDGTP 180
N+ E K +P+L+ LD P
Sbjct: 211 RGYNYRAEVRKLIPQLQVLDEVP 233
>gi|61966709 leucine rich repeat containing 67 [Homo sapiens]
Length = 228
Score = 50.4 bits (119), Expect = 9e-07
Identities = 52/149 (34%), Positives = 69/149 (46%), Gaps = 19/149 (12%)
Query: 43 SLSMLANCEKLSLSTNCIEKIANLNGLKNLRILSLGRNNIKNLNGLEAVGDTLEELWISY 102
+L+ N L L NCI I NL LK L L LG N I + GLE +G+ L EL +
Sbjct: 67 NLNYATNLTHLYLQNNCISCIENLRSLKKLEKLYLGGNYIAVIEGLEGLGE-LRELHVEN 125
Query: 103 NFI---EKL----KGIH-IMKKLKILYMSNNLVKDWAEFVKLAELPCLEDLVFVGNPLEE 154
+ EKL + +H + K L IL +SNN + D L L L L+ V N L
Sbjct: 126 QRLPLGEKLLFDPRTLHSLAKSLCILNISNNNIDD---ITDLELLENLNQLIAVDNQLLH 182
Query: 155 KHSAENNWIEEATKRVPKLKKLD--GTPV 181
+E ++ KL K+D G PV
Sbjct: 183 VKD-----LEFLLNKLMKLWKIDLNGNPV 206
Score = 45.4 bits (106), Expect = 3e-05
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 44 LSMLANCEKLSLSTNCIEKIANLNGLKNLRILSLGRNNIKNLNGLEAVGDTLEELWISYN 103
LS+ N L L NCI +I NLN NL L L N I + L ++ LE+L++ N
Sbjct: 46 LSLCKNLSVLYLYDNCISQITNLNYATNLTHLYLQNNCISCIENLRSL-KKLEKLYLGGN 104
Query: 104 FIEKLKGIHIMKKLKILYMSN 124
+I ++G+ + +L+ L++ N
Sbjct: 105 YIAVIEGLEGLGELRELHVEN 125
>gi|15529980 leucine rich repeat containing 46 [Homo sapiens]
Length = 321
Score = 49.7 bits (117), Expect = 2e-06
Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 14/155 (9%)
Query: 38 EKMDASLSMLANCEKLSLSTNCIEKIANLNGLKNLRILSLGRNNIKNLNGLEAVGDTLEE 97
EKM +L L + + L I I NL GL+NL L L N I+ + L + +L
Sbjct: 37 EKMFHTLDEL---QTVRLDREGITTIRNLEGLQNLHSLYLQGNKIQQIENLACI-PSLRF 92
Query: 98 LWISYNFIEKLKGIHIMKKLKILYMSNNLVKDWAEFVKLAELPCLEDLVFVGNPLEEKHS 157
L ++ N I +++ + + L+ L +S NL+ E +KL E P + + N +
Sbjct: 93 LSLAGNQIRQVENLLDLPCLQFLDLSENLI----ETLKLDEFP---QSLLILNLSGNSCT 145
Query: 158 AENNWIEEATKRVPKLKKLDGTPVIK---GDEEED 189
++ + E T+ +P L LDG PV++ DEE++
Sbjct: 146 NQDGYRELVTEALPLLLDLDGQPVVERWISDEEDE 180
>gi|117414162 sodium channel associated protein 2 isoform a [Homo
sapiens]
Length = 1032
Score = 47.8 bits (112), Expect = 6e-06
Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 11/128 (8%)
Query: 37 IEKMDASLSMLANCEKLSLSTNCIEKIANLNGLKNLRILSLGRNNIKNLNGLEAVGDTLE 96
I K++A + + N + L LS+N I +I LN L L L+L N I + GLE + L
Sbjct: 55 ISKIEA-IDHIWNLQHLDLSSNQISRIEGLNTLTKLCTLNLSCNLITKVEGLEEL-INLT 112
Query: 97 ELWISYNFIEKLKGI----HIMKKLKILYMSNNLVKDWAEFVKLAELPCLEDLVFVGNPL 152
L +SYN I+ L G+ I KL+ + + +N + L C+ L F+ N +
Sbjct: 113 RLNVSYNHIDDLSGLIPLHGIKHKLRYIDLHSNRIDSIHHL-----LQCMVGLHFLTNLI 167
Query: 153 EEKHSAEN 160
EK +N
Sbjct: 168 LEKDGDDN 175
>gi|120953300 leucine-rich repeats and IQ motif containing 1 isoform 1
[Homo sapiens]
Length = 1722
Score = 45.1 bits (105), Expect = 4e-05
Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 18/170 (10%)
Query: 35 PPIEKMDASLSMLANCEK---------LSLSTNCIEKIANLNGLKNLRILSLGRNNIKNL 85
P I +D S + L + E L L N + ++ +L L LR L L N+I +
Sbjct: 991 PTIVYLDCSHNHLTDVEGVENCGLLQILKLQGNYLSELPSLENLVLLRELHLDDNSISTV 1050
Query: 86 NGLEAVG-DTLEELWISYNFIEKLKGIHIMKKLKILYMSNNLVKDWAEFVKLAELP-CLE 143
+ L+ + IS N + K+ + L+ L +S+N + D +K + L
Sbjct: 1051 EAFSSYWLPLLQNITISQNSLTKIVPLFHFVSLEKLDVSHNCLSDLKSAIKWFDACYSLH 1110
Query: 144 DLVFVGNPLEEKHSAENNWIEEATKRVPKLKKLDGTPVIKGDE---EEDN 190
+L GNPL + E NW + K +P L+ L+G + E EE N
Sbjct: 1111 ELSLTGNPLLQ----ETNWRDSLLKVLPALRILNGNILNSNSESRTEEHN 1156
Score = 34.3 bits (77), Expect = 0.066
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 43 SLSMLANCEKLSL---STNCIEKIANLNGLKNLRILSLGRNNIKNLNGLEAVGDTLEELW 99
SL L+NC+KL N IE I N L+NL ++ L +N + +L+GL+ ++ L
Sbjct: 832 SLHSLSNCKKLKYIDAQENHIEAIECEN-LENLCVVLLNKNQLTSLHGLDGC-TNIQCLE 889
Query: 100 ISYNFIEKL 108
+SYN I ++
Sbjct: 890 LSYNKITRI 898
>gi|120953243 leucine-rich repeats and IQ motif containing 1 isoform 2
[Homo sapiens]
Length = 1336
Score = 45.1 bits (105), Expect = 4e-05
Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 18/170 (10%)
Query: 35 PPIEKMDASLSMLANCEK---------LSLSTNCIEKIANLNGLKNLRILSLGRNNIKNL 85
P I +D S + L + E L L N + ++ +L L LR L L N+I +
Sbjct: 991 PTIVYLDCSHNHLTDVEGVENCGLLQILKLQGNYLSELPSLENLVLLRELHLDDNSISTV 1050
Query: 86 NGLEAVG-DTLEELWISYNFIEKLKGIHIMKKLKILYMSNNLVKDWAEFVKLAELP-CLE 143
+ L+ + IS N + K+ + L+ L +S+N + D +K + L
Sbjct: 1051 EAFSSYWLPLLQNITISQNSLTKIVPLFHFVSLEKLDVSHNCLSDLKSAIKWFDACYSLH 1110
Query: 144 DLVFVGNPLEEKHSAENNWIEEATKRVPKLKKLDGTPVIKGDE---EEDN 190
+L GNPL + E NW + K +P L+ L+G + E EE N
Sbjct: 1111 ELSLTGNPLLQ----ETNWRDSLLKVLPALRILNGNILNSNSESRTEEHN 1156
Score = 34.3 bits (77), Expect = 0.066
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 43 SLSMLANCEKLSL---STNCIEKIANLNGLKNLRILSLGRNNIKNLNGLEAVGDTLEELW 99
SL L+NC+KL N IE I N L+NL ++ L +N + +L+GL+ ++ L
Sbjct: 832 SLHSLSNCKKLKYIDAQENHIEAIECEN-LENLCVVLLNKNQLTSLHGLDGC-TNIQCLE 889
Query: 100 ISYNFIEKL 108
+SYN I ++
Sbjct: 890 LSYNKITRI 898
>gi|50593002 small nuclear ribonucleoprotein polypeptide A' [Homo
sapiens]
Length = 255
Score = 44.7 bits (104), Expect = 5e-05
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 53 LSLSTNCIEKIANLNGLKNLRILSLGRNNIKNLNGLEAVGDTLEELWISYNFIEKLKGIH 112
+ L+ IE+ A R L L I + L A D + + S N I KL G
Sbjct: 2 VKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP 61
Query: 113 IMKKLKILYMSNNLVKDWAEFVKLAELPCLEDLVFVGNPLEE 154
++++LK L ++NN + E + A LPCL +L+ N L E
Sbjct: 62 LLRRLKTLLVNNNRICRIGEGLDQA-LPCLTELILTNNSLVE 102
>gi|62241040 leucine rich repeat containing 8 family, member A [Homo
sapiens]
Length = 810
Score = 43.5 bits (101), Expect = 1e-04
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 47 LANCEKLSLSTNCIEKI-ANLNGLKNLRILSLGRNNIKNLNGLEAVGDTLEELWISYNFI 105
L N E+L L+ N IEKI L + LR L L NN+ L + L+ L I+ N I
Sbjct: 661 LTNLERLYLNRNKIEKIPTQLFYCRKLRYLDLSHNNLTFLPADIGLLQNLQNLAITANRI 720
Query: 106 EKL-KGIHIMKKLKILYMSNNLVKDWAEFVKLAELPCLEDLVFVGNPLE 153
E L + +KL+ L++ NN+++ ++ EL L + GN LE
Sbjct: 721 ETLPPELFQCRKLRALHLGNNVLQSLPS--RVGELTNLTQIELRGNRLE 767
Score = 27.7 bits (60), Expect = 6.2
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 70 KNLRILSLGRNNIKNLNGLEAVGDTLEELWISYNFIEK------LKGIHIMKKLKILYMS 123
+NLR L + +IK + TLEEL ++ N + + G+ +K+LK+L +
Sbjct: 493 ENLRALHIKFTDIKEIPLWIYSLKTLEELHLTGNLSAENNRYIVIDGLRELKRLKVLRLK 552
Query: 124 NNLVK 128
+NL K
Sbjct: 553 SNLSK 557
>gi|187829877 leucine rich repeat containing 8 family, member A
[Homo sapiens]
Length = 810
Score = 43.5 bits (101), Expect = 1e-04
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 47 LANCEKLSLSTNCIEKI-ANLNGLKNLRILSLGRNNIKNLNGLEAVGDTLEELWISYNFI 105
L N E+L L+ N IEKI L + LR L L NN+ L + L+ L I+ N I
Sbjct: 661 LTNLERLYLNRNKIEKIPTQLFYCRKLRYLDLSHNNLTFLPADIGLLQNLQNLAITANRI 720
Query: 106 EKL-KGIHIMKKLKILYMSNNLVKDWAEFVKLAELPCLEDLVFVGNPLE 153
E L + +KL+ L++ NN+++ ++ EL L + GN LE
Sbjct: 721 ETLPPELFQCRKLRALHLGNNVLQSLPS--RVGELTNLTQIELRGNRLE 767
Score = 27.7 bits (60), Expect = 6.2
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 70 KNLRILSLGRNNIKNLNGLEAVGDTLEELWISYNFIEK------LKGIHIMKKLKILYMS 123
+NLR L + +IK + TLEEL ++ N + + G+ +K+LK+L +
Sbjct: 493 ENLRALHIKFTDIKEIPLWIYSLKTLEELHLTGNLSAENNRYIVIDGLRELKRLKVLRLK 552
Query: 124 NNLVK 128
+NL K
Sbjct: 553 SNLSK 557
>gi|187829871 leucine rich repeat containing 8 family, member A
[Homo sapiens]
Length = 810
Score = 43.5 bits (101), Expect = 1e-04
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 47 LANCEKLSLSTNCIEKI-ANLNGLKNLRILSLGRNNIKNLNGLEAVGDTLEELWISYNFI 105
L N E+L L+ N IEKI L + LR L L NN+ L + L+ L I+ N I
Sbjct: 661 LTNLERLYLNRNKIEKIPTQLFYCRKLRYLDLSHNNLTFLPADIGLLQNLQNLAITANRI 720
Query: 106 EKL-KGIHIMKKLKILYMSNNLVKDWAEFVKLAELPCLEDLVFVGNPLE 153
E L + +KL+ L++ NN+++ ++ EL L + GN LE
Sbjct: 721 ETLPPELFQCRKLRALHLGNNVLQSLPS--RVGELTNLTQIELRGNRLE 767
Score = 27.7 bits (60), Expect = 6.2
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 70 KNLRILSLGRNNIKNLNGLEAVGDTLEELWISYNFIEK------LKGIHIMKKLKILYMS 123
+NLR L + +IK + TLEEL ++ N + + G+ +K+LK+L +
Sbjct: 493 ENLRALHIKFTDIKEIPLWIYSLKTLEELHLTGNLSAENNRYIVIDGLRELKRLKVLRLK 552
Query: 124 NNLVK 128
+NL K
Sbjct: 553 SNLSK 557
>gi|31377705 centrosomal protein 97kDa [Homo sapiens]
Length = 865
Score = 43.5 bits (101), Expect = 1e-04
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 3/110 (2%)
Query: 44 LSMLANCEKLSLSTNCIEKIANLNGLKNLRILSLGRNNIKNLNGLEAVGDTLEELWISYN 103
L L + E L+L+ N ++ + +N L+ L L NNI + L + +L+ L + N
Sbjct: 98 LKELVHLEWLNLAGNNLKAMEQINSCTALQHLDLSDNNISQIGDLSKLV-SLKTLLLHGN 156
Query: 104 FIEKLK--GIHIMKKLKILYMSNNLVKDWAEFVKLAELPCLEDLVFVGNP 151
I L+ ++ + L IL ++ N ++D E LA L LE L + NP
Sbjct: 157 IITSLRMAPAYLPRSLAILSLAENEIRDLNEISFLASLTELEQLSIMNNP 206
Score = 33.9 bits (76), Expect = 0.087
Identities = 28/102 (27%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 44 LSMLANCEKL---SLSTNCIEKIANLNGLKNLRILSLGRNNIKNLNGLEAVGDTLEELWI 100
L L C++L S++ N + ++ + L LR+L+L N+I + GL+ + LE L +
Sbjct: 51 LENLEKCKRLIQLSVANNRLVRMMGVAKLTLLRVLNLPHNSIGCVEGLKELVH-LEWLNL 109
Query: 101 SYNFIEKLKGIHIMKKLKILYMSNNLVKDWAEFVKLAELPCL 142
+ N ++ ++ I+ L+ L +S+N + + KL L L
Sbjct: 110 AGNNLKAMEQINSCTALQHLDLSDNNISQIGDLSKLVSLKTL 151
>gi|194239701 tubulin folding cofactor E-like [Homo sapiens]
Length = 424
Score = 42.7 bits (99), Expect = 2e-04
Identities = 35/160 (21%), Positives = 78/160 (48%), Gaps = 10/160 (6%)
Query: 38 EKMDASLSMLANCEKLSLSTNCIEKIANLN-GLKNLRILSLGRNNIKNLNGLEAVG---D 93
E + L L + E+L L N E ++ + +L++L + NN+++ + +G
Sbjct: 141 ETVHMILQELPDLEELFLCLNDYETVSCPSICCHSLKLLHITDNNLQDWTEIRKLGVMFP 200
Query: 94 TLEELWISYNFIEKLKG-----IHIMKKLKILYMSNNLVKDWAEFVKLAELPCLEDLVFV 148
+L+ L ++ N + ++ + L+ + + + ++ W + KL P LE++ +
Sbjct: 201 SLDTLVLANNHLNAIEEPDDSLARLFPNLRSISLHKSGLQSWEDIDKLNSFPKLEEVRLL 260
Query: 149 GNPLEEKHSAENNWIEEATKRVPKLKKLDGTPVIKGDEEE 188
G PL + ++ E + R+P + KL+G+ V G+ E+
Sbjct: 261 GIPLLQPYTTEER-RKLVIARLPSVSKLNGSVVTDGERED 299
>gi|194239699 tubulin folding cofactor E-like [Homo sapiens]
Length = 424
Score = 42.7 bits (99), Expect = 2e-04
Identities = 35/160 (21%), Positives = 78/160 (48%), Gaps = 10/160 (6%)
Query: 38 EKMDASLSMLANCEKLSLSTNCIEKIANLN-GLKNLRILSLGRNNIKNLNGLEAVG---D 93
E + L L + E+L L N E ++ + +L++L + NN+++ + +G
Sbjct: 141 ETVHMILQELPDLEELFLCLNDYETVSCPSICCHSLKLLHITDNNLQDWTEIRKLGVMFP 200
Query: 94 TLEELWISYNFIEKLKG-----IHIMKKLKILYMSNNLVKDWAEFVKLAELPCLEDLVFV 148
+L+ L ++ N + ++ + L+ + + + ++ W + KL P LE++ +
Sbjct: 201 SLDTLVLANNHLNAIEEPDDSLARLFPNLRSISLHKSGLQSWEDIDKLNSFPKLEEVRLL 260
Query: 149 GNPLEEKHSAENNWIEEATKRVPKLKKLDGTPVIKGDEEE 188
G PL + ++ E + R+P + KL+G+ V G+ E+
Sbjct: 261 GIPLLQPYTTEER-RKLVIARLPSVSKLNGSVVTDGERED 299
>gi|87298937 centrosomal protein 110kDa [Homo sapiens]
Length = 2325
Score = 42.7 bits (99), Expect = 2e-04
Identities = 50/184 (27%), Positives = 82/184 (44%), Gaps = 34/184 (18%)
Query: 32 AQIPPIEKMDASLSMLANCEKLSLSTNCIEK---IANLNGLKNLRILSLGRNNIKNLNGL 88
A I + K D +L+++ + LSLS + +K I NL L +L+L N I + L
Sbjct: 86 ALIKKLTKQD-NLALIKSLN-LSLSKDGGKKFKYIENLEKCVKLEVLNLSYNLIGKIEKL 143
Query: 89 EAVGDTLEELWISYNFIEKLKGI-----------------HI-------MKKLKILYMSN 124
+ + L EL +SYN I K++GI HI +K L++L +
Sbjct: 144 DKLLK-LRELNLSYNKISKIEGIENMCNLQKLNLAGNEIEHIPVWLGKKLKSLRVLNLKG 202
Query: 125 NLVKDWAEFVKLAELPCLEDLVFVGNPLEEKHSAENNWIEEATKRVPKLKKLDGTPVIKG 184
N + + KL L L L+ V NP+ ++++ + L+ L+G PV
Sbjct: 203 NKISSLQDISKLKPLQDLISLILVENPV----VTLPHYLQFTIFHLRSLESLEGQPVTTQ 258
Query: 185 DEEE 188
D +E
Sbjct: 259 DRQE 262
>gi|238908508 leucine-rich repeat and death domain-containing
protein [Homo sapiens]
Length = 860
Score = 42.4 bits (98), Expect = 2e-04
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Query: 37 IEKMDASLSMLANCEKLSLSTNCIEKI-ANLNGLKNLRILSLGRNNIKNLNGLEAVGDTL 95
I + +S L N +L N IE ++L L NL ILSLG+N ++++ TL
Sbjct: 223 ISHIPKEISQLGNIRQLFFYNNYIENFPSDLECLGNLEILSLGKNKLRHIPDTLPSLKTL 282
Query: 96 EELWISYNFIEKL-KGIHIMKKLKILYMSNNLVKDWAEFVKLAELPCLEDLVFVGNPL 152
L + YN + K + + KL L ++ NL+ + ++ EL LE L+ N L
Sbjct: 283 RVLNLEYNQLTTFPKALCFLPKLISLDLTGNLISSLPK--EIRELKNLETLLMDHNKL 338
Score = 37.7 bits (86), Expect = 0.006
Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 7/114 (6%)
Query: 22 PSEAKEIK----LYAQIPPIEKMDASLSMLANCEKLSLSTNCIEKIAN-LNGLKNLRILS 76
P E +E+K L + + + L ++L L+ N +E I++ + + LRIL
Sbjct: 319 PKEIRELKNLETLLMDHNKLTFLAVEIFQLLKIKELQLADNKLEVISHKIENFRELRILI 378
Query: 77 LGRNNIKNLNGLEAVGDTLEELWISYNFIEKL-KGIHIMKKLKILYMS-NNLVK 128
L +N +KN+ + LE L +S N + +L K IH + L+ L+++ NN+VK
Sbjct: 379 LDKNLLKNIPEKISCCAMLECLSLSDNKLTELPKYIHKLNNLRKLHVNRNNMVK 432
Score = 28.9 bits (63), Expect = 2.8
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 14/114 (12%)
Query: 64 ANLNGLKNLRILSLGRNNIKNLNGLEAVGDTLEELWISYNFIEKL-KGIHIMKKLKILYM 122
A+ L L ILSL N + +L + L L +S+N I + K I + ++ L+
Sbjct: 182 ADSGDLLGLEILSLQENGLSSLPSEIQLLHNLRILNVSHNHISHIPKEISQLGNIRQLFF 241
Query: 123 SNNLVKDWAEFVKLAELPCLEDLVFVGNPLEEKHSAENNWIEEATKRVPKLKKL 176
NN ++++ ++L CL +L E S N + +P LK L
Sbjct: 242 YNNYIENFP-----SDLECLGNL--------EILSLGKNKLRHIPDTLPSLKTL 282
>gi|149773484 leucine rich repeat and fibronectin type III domain
containing 1 [Homo sapiens]
Length = 771
Score = 42.4 bits (98), Expect = 2e-04
Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 8/99 (8%)
Query: 53 LSLSTNCIEKIAN--LNGLKNLRILSLGRNNIKNLN--GLEAVGDTLEELWISYNFIEKL 108
L L +N + ++ L GL NLR L LG N I+ + +A T+E+L +SYN +E L
Sbjct: 118 LHLDSNRLAEVRGDQLRGLGNLRHLILGNNQIRRVESAAFDAFLSTVEDLDLSYNNLEAL 177
Query: 109 --KGIHIMKKLKILYMSNNLVKDWAE--FVKLAELPCLE 143
+ + M L L + +NL+ AE FV+L +L L+
Sbjct: 178 PWEAVGQMVNLNTLTLDHNLIDHIAEGTFVQLHKLVRLD 216
>gi|53828918 Rab geranylgeranyltransferase alpha [Homo sapiens]
Length = 567
Score = 41.2 bits (95), Expect = 5e-04
Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 16/122 (13%)
Query: 31 YAQIPPIEKMDASLSMLANCEKLSLSTNCIEKIANLNGLKNLRILSLGRNNIKNLNGLEA 90
YA++ + L++L + E+L L T+ L L N ++ L A
Sbjct: 440 YAEVRVLHLAHKDLTVLCHLEQLLLVTH----------------LDLSHNRLRTLPPALA 483
Query: 91 VGDTLEELWISYNFIEKLKGIHIMKKLKILYMSNNLVKDWAEFVKLAELPCLEDLVFVGN 150
LE L S N IE L G+ + +L+ L + NN ++ A LA P L L GN
Sbjct: 484 ALRCLEVLQASDNAIESLDGVTNLPRLQELLLCNNRLQQPAVLQPLASCPRLVLLNLQGN 543
Query: 151 PL 152
PL
Sbjct: 544 PL 545
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.132 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,031,902
Number of Sequences: 37866
Number of extensions: 284354
Number of successful extensions: 833
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 711
Number of HSP's gapped (non-prelim): 173
length of query: 190
length of database: 18,247,518
effective HSP length: 96
effective length of query: 94
effective length of database: 14,612,382
effective search space: 1373563908
effective search space used: 1373563908
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.