Guide to the Human Genome
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Name: TBCEL Sequence: fasta or formatted (424aa) NCBI GI: 194239699
Description:

tubulin folding cofactor E-like

Referenced in:

Leucine-rich Repeat Family

Other entries for this name:
alt mRNA [424aa] tubulin folding cofactor E-like
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8         16           2
 C cysteine            2.1          9           2
 D aspartate           5.7         24           2
 E glutamate           9.0         38           2
 F phenylalanine       3.8         16           2
 G glycine             4.2         18           1
 H histidine           2.8         12           1
 I isoleucine          4.0         17           1
 K lysine              5.7         24           2
 L leucine            13.4         57           2
 M methionine          2.1          9           1
 N asparagine          5.0         21           2
 P proline             6.1         26           1
 Q glutamine           3.3         14           1
 R arginine            5.0         21           2
 S serine              9.2         39           2
 T threonine           3.8         16           2
 V valine              7.3         31           2
 W tryptophan          0.9          4           1
 Y tyrosine            2.8         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tubulin folding cofactor E-like 
TBCEL                 1.000   tubulin folding cofactor E-like 
TBCE                  0.123   beta-tubulin cofactor E 
TBCE                  0.123   beta-tubulin cofactor E 
NISCH                 0.030   nischarin 
LRRN1                 0.024   leucine rich repeat neuronal 1 
PPP1R7                0.023   protein phosphatase 1, regulatory subunit 7 
DNAL1                 0.022   axonemal dynein light chain 1 
LRGUK                 0.020   leucine-rich repeats and guanylate kinase domain con...
LRRN2                 0.019   leucine rich repeat neuronal 2 
LRRN2                 0.019   leucine rich repeat neuronal 2 
LRRC39                0.018   leucine rich repeat containing 39 
LRRTM4                0.018   leucine rich repeat transmembrane neuronal 4 isofor...
LRRTM4                0.018   leucine rich repeat transmembrane neuronal 4 isofor...
FLII                  0.018   flightless I homolog 
LRRN3                 0.018   leucine rich repeat neuronal 3 
LRRN3                 0.018   leucine rich repeat neuronal 3 
LRRN3                 0.018   leucine rich repeat neuronal 3 
LRRC6                 0.017   leucine rich repeat containing 6 
SNRPA1                0.016   small nuclear ribonucleoprotein polypeptide A' [Homo...
TLR6                  0.014   toll-like receptor 6 
C10orf11              0.014   chromosome 10 open reading frame 11 
NXF1                  0.014   nuclear RNA export factor 1 isoform 1 
TLR1                  0.014   toll-like receptor 1 
RNH1                  0.014   ribonuclease/angiogenin inhibitor 
RNH1                  0.014   ribonuclease/angiogenin inhibitor 
RNH1                  0.014   ribonuclease/angiogenin inhibitor 
RNH1                  0.014   ribonuclease/angiogenin inhibitor 
RNH1                  0.014   ribonuclease/angiogenin inhibitor 
RNH1                  0.014   ribonuclease/angiogenin inhibitor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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