Guide to the Human Genome
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Name: SGSM3 Sequence: fasta or formatted (749aa) NCBI GI: 29648315
Description:

small G protein signaling modulator 3

Referenced in:

Additional Interaction Domain Families
Rab

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         54           2
 C cysteine            2.1         16           2
 D aspartate           5.9         44           3
 E glutamate           8.1         61           3
 F phenylalanine       3.9         29           2
 G glycine             5.2         39           2
 H histidine           3.1         23           2
 I isoleucine          4.0         30           2
 K lysine              4.7         35           2
 L leucine            14.2        106           3
 M methionine          2.0         15           2
 N asparagine          2.1         16           1
 P proline             3.9         29           1
 Q glutamine           4.4         33           2
 R arginine            6.7         50           3
 S serine              7.2         54           2
 T threonine           4.4         33           2
 V valine              6.4         48           2
 W tryptophan          2.3         17           1
 Y tyrosine            2.3         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   small G protein signaling modulator 3 
TBC1D2B               0.121   TBC1 domain family, member 2B isoform a 
TBC1D2B               0.119   TBC1 domain family, member 2B isoform b 
TBC1D2                0.106   TBC1 domain family, member 2 
TBC1D9                0.101   TBC1 domain family, member 9 (with GRAM domain) [Ho...
TBC1D9B               0.094   TBC1 domain family, member 9B (with GRAM domain) iso...
TBC1D9B               0.094   TBC1 domain family, member 9B (with GRAM domain) iso...
TBC1D8B               0.094   TBC1 domain family, member 8B (with GRAM domain) iso...
TBC1D8                0.089   TBC1 domain family, member 8 
GRTP1                 0.071   growth hormone regulated TBC protein 1 
TBC1D10A              0.068   TBC1 domain family, member 10A 
TBC1D10C              0.065   TBC1 domain family, member 10C 
TBC1D10B              0.065   TBC1 domain family, member 10B 
EVI5                  0.064   ecotropic viral integration site 5 
TBC1D1                0.064   TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member...
TBC1D4                0.063   TBC1 domain family, member 4 
EVI5L                 0.061   ecotropic viral integration site 5-like isoform 1 [...
EVI5L                 0.061   ecotropic viral integration site 5-like isoform 2 [H...
TBC1D8B               0.060   TBC1 domain family, member 8B (with GRAM domain) iso...
RABGAP1L              0.056   RAB GTPase activating protein 1-like isoform A [Homo...
RABGAP1               0.055   RAB GTPase activating protein 1 
TBC1D30               0.053   PREDICTED: TBC1 domain family, member 30 
TBC1D30               0.053   PREDICTED: TBC1 domain family, member 30 
TBC1D30               0.053   PREDICTED: TBC1 domain family, member 30 
USP6NL                0.052   USP6 N-terminal like isoform 1 
USP6NL                0.052   USP6 N-terminal like isoform 2 
TBC1D14               0.041   TBC1 domain family, member 14 isoform b 
TBC1D14               0.041   TBC1 domain family, member 14 isoform a 
TBC1D14               0.041   TBC1 domain family, member 14 isoform a 
TBC1D12               0.034   TBC1 domain family, member 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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