Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TBCKL Sequence: fasta or formatted (830aa) NCBI GI: 34147456
Description:

TBC domain-containing protein kinase-like

Referenced in:

Rab

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         47           3
 C cysteine            2.7         22           1
 D aspartate           6.4         53           2
 E glutamate           6.1         51           2
 F phenylalanine       5.2         43           2
 G glycine             4.6         38           2
 H histidine           2.9         24           1
 I isoleucine          7.2         60           2
 K lysine              6.1         51           2
 L leucine            12.8        106           3
 M methionine          1.2         10           1
 N asparagine          3.6         30           2
 P proline             7.2         60           2
 Q glutamine           2.7         22           2
 R arginine            4.6         38           2
 S serine              7.6         63           3
 T threonine           4.8         40           2
 V valine              4.7         39           3
 W tryptophan          1.1          9           1
 Y tyrosine            2.9         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TBC domain-containing protein kinase-like 
RABGAP1               0.032   RAB GTPase activating protein 1 
TBC1D22B              0.030   TBC1 domain family, member 22B 
TBC1D22A              0.026   TBC1 domain family, member 22A 
RABGAP1L              0.026   RAB GTPase activating protein 1-like isoform A [Homo...
TBC1D17               0.026   TBC1 domain family, member 17 
TBC1D8                0.025   TBC1 domain family, member 8 
TBC1D10A              0.025   TBC1 domain family, member 10A 
TBC1D12               0.024   TBC1 domain family, member 12 
TBC1D14               0.024   TBC1 domain family, member 14 isoform b 
TBC1D14               0.024   TBC1 domain family, member 14 isoform a 
TBC1D14               0.024   TBC1 domain family, member 14 isoform a 
TBC1D10C              0.024   TBC1 domain family, member 10C 
TBC1D8B               0.023   TBC1 domain family, member 8B (with GRAM domain) iso...
SGSM1                 0.023   RUN and TBC1 domain containing 2 isoform 4 
SGSM1                 0.023   RUN and TBC1 domain containing 2 isoform 3 
SGSM1                 0.023   RUN and TBC1 domain containing 2 isoform 2 
SGSM1                 0.023   RUN and TBC1 domain containing 2 isoform 1 
EVI5                  0.023   ecotropic viral integration site 5 
EVI5L                 0.022   ecotropic viral integration site 5-like isoform 1 [...
EVI5L                 0.022   ecotropic viral integration site 5-like isoform 2 [H...
TBC1D1                0.021   TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member...
TBC1D9                0.021   TBC1 domain family, member 9 (with GRAM domain) [Ho...
SGSM2                 0.021   RUN and TBC1 domain containing 1 isoform 2 
SGSM2                 0.021   RUN and TBC1 domain containing 1 isoform 1 
TBC1D30               0.021   PREDICTED: TBC1 domain family, member 30 
TBC1D30               0.021   PREDICTED: TBC1 domain family, member 30 
TBC1D30               0.021   PREDICTED: TBC1 domain family, member 30 
TBC1D2B               0.020   TBC1 domain family, member 2B isoform a 
TBC1D2B               0.020   TBC1 domain family, member 2B isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press