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Search of human proteins with 16418451
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|16418451 hypothetical protein LOC116328 [Homo sapiens]
(427 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|16418451 hypothetical protein LOC116328 [Homo sapiens] 860 0.0
gi|58082089 hypothetical protein LOC161394 [Homo sapiens] 39 0.012
gi|151301204 unc-51-like kinase 4 [Homo sapiens] 35 0.13
gi|22035682 DBF4 homolog B isoform 1 [Homo sapiens] 35 0.13
gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithor... 34 0.22
gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens] 34 0.22
gi|4557509 cylicin 2 [Homo sapiens] 34 0.29
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 34 0.29
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 34 0.29
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 34 0.29
gi|14141161 heterogeneous nuclear ribonucleoprotein U isoform b ... 33 0.49
gi|100816397 MYST histone acetyltransferase (monocytic leukemia)... 33 0.49
gi|74136883 heterogeneous nuclear ribonucleoprotein U isoform a ... 33 0.65
gi|54792092 ATM interactor [Homo sapiens] 33 0.65
gi|38788260 bromodomain PHD finger transcription factor isoform ... 32 0.84
gi|38788274 bromodomain PHD finger transcription factor isoform ... 32 0.84
gi|116268091 PHD finger protein 23 [Homo sapiens] 32 1.1
gi|108773808 hypothetical protein LOC51244 [Homo sapiens] 32 1.1
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 32 1.1
gi|239745299 PREDICTED: hypothetical protein [Homo sapiens] 32 1.4
gi|24429588 zinc finger protein 532 [Homo sapiens] 32 1.4
gi|67551265 transcription factor ELYS [Homo sapiens] 32 1.4
gi|41281808 harmonin isoform b3 [Homo sapiens] 31 1.9
gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-li... 31 1.9
gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sap... 31 1.9
gi|38327032 ubiquitin-activating enzyme 5 isoform 2 [Homo sapiens] 31 1.9
gi|13376212 ubiquitin-activating enzyme 5 isoform 1 [Homo sapiens] 31 1.9
gi|114155142 nuclear pore complex-associated protein TPR [Homo s... 31 1.9
gi|44888833 PDZ domain containing 6 [Homo sapiens] 31 1.9
gi|59709436 tumor necrosis factor, alpha-induced protein 8-like ... 31 1.9
>gi|16418451 hypothetical protein LOC116328 [Homo sapiens]
Length = 427
Score = 860 bits (2221), Expect = 0.0
Identities = 427/427 (100%), Positives = 427/427 (100%)
Query: 1 MTKLITETPDQPIPFLIDHLQSKQGNRGQLQRTLSGSAALWAESEKSESKGTRRDFRSYD 60
MTKLITETPDQPIPFLIDHLQSKQGNRGQLQRTLSGSAALWAESEKSESKGTRRDFRSYD
Sbjct: 1 MTKLITETPDQPIPFLIDHLQSKQGNRGQLQRTLSGSAALWAESEKSESKGTRRDFRSYD 60
Query: 61 KPWQLNAKKPKKSKSDLAVSNISPPSPDSKSLPRSVEHPKWNWRTKPQSRDFDELNHILQ 120
KPWQLNAKKPKKSKSDLAVSNISPPSPDSKSLPRSVEHPKWNWRTKPQSRDFDELNHILQ
Sbjct: 61 KPWQLNAKKPKKSKSDLAVSNISPPSPDSKSLPRSVEHPKWNWRTKPQSRDFDELNHILQ 120
Query: 121 ESKKLGKALENLSRSIAISDELDKETVTFNSSLLRPRVIGEWIGREENDADPLAAEMLQP 180
ESKKLGKALENLSRSIAISDELDKETVTFNSSLLRPRVIGEWIGREENDADPLAAEMLQP
Sbjct: 121 ESKKLGKALENLSRSIAISDELDKETVTFNSSLLRPRVIGEWIGREENDADPLAAEMLQP 180
Query: 181 PIPRSKNDQWESEDSGSSPAGSLKMEPKNKGLKQQQQQHKKLLAAMLSQDSFESIHSPTP 240
PIPRSKNDQWESEDSGSSPAGSLKMEPKNKGLKQQQQQHKKLLAAMLSQDSFESIHSPTP
Sbjct: 181 PIPRSKNDQWESEDSGSSPAGSLKMEPKNKGLKQQQQQHKKLLAAMLSQDSFESIHSPTP 240
Query: 241 SVTEEDIDNEDDAMELLEDLNDLRMEGVTTLVPSGSKFNQGRPTYPAEPQAKVTLNICSR 300
SVTEEDIDNEDDAMELLEDLNDLRMEGVTTLVPSGSKFNQGRPTYPAEPQAKVTLNICSR
Sbjct: 241 SVTEEDIDNEDDAMELLEDLNDLRMEGVTTLVPSGSKFNQGRPTYPAEPQAKVTLNICSR 300
Query: 301 CARLQGDNLEERTEESLPILHSPDEKIPDSFDSLPGTEEALMEEGDEFEKASKLTGPGEA 360
CARLQGDNLEERTEESLPILHSPDEKIPDSFDSLPGTEEALMEEGDEFEKASKLTGPGEA
Sbjct: 301 CARLQGDNLEERTEESLPILHSPDEKIPDSFDSLPGTEEALMEEGDEFEKASKLTGPGEA 360
Query: 361 SSGVGHSLKNYMEEDESLKQLQVVHQPWILPSDTESEGVEAEQEKRSADLLLCVPCSSCP 420
SSGVGHSLKNYMEEDESLKQLQVVHQPWILPSDTESEGVEAEQEKRSADLLLCVPCSSCP
Sbjct: 361 SSGVGHSLKNYMEEDESLKQLQVVHQPWILPSDTESEGVEAEQEKRSADLLLCVPCSSCP 420
Query: 421 TLVYSGL 427
TLVYSGL
Sbjct: 421 TLVYSGL 427
>gi|58082089 hypothetical protein LOC161394 [Homo sapiens]
Length = 674
Score = 38.5 bits (88), Expect = 0.012
Identities = 66/321 (20%), Positives = 119/321 (37%), Gaps = 44/321 (13%)
Query: 120 QESKKLGKALENLSRSIAISDELDKETVTFNSSLLRPRVIGEWI--GREENDADPLA--- 174
+ S+++G+ ++L A DE KE+ +P V + E D DP+
Sbjct: 110 ETSREMGEFFKDLE---APMDETHKESDLEPPEEAKPNVTEDVFLESAMETDPDPVPPTE 166
Query: 175 --AEMLQPPIPRSKNDQWESEDSGSSPAGSLKMEPKNKGLKQQQQQHKKLLAAMLSQDSF 232
+E+ + + E E P SL+++ + GL+ +Q + + L +
Sbjct: 167 TMSEVSGATVRERNLELLEEETEPGVPEESLRVQHEETGLEPPEQTKQDFPSEKLGESLE 226
Query: 233 ESIHSP---TPSVTEEDIDNEDDAMELLEDLNDLRMEGVTTLVPSGSKFNQGRPTYPAEP 289
E+ P T T E+ E + E R+E + S+ P P E
Sbjct: 227 ETDLQPPKMTKPETPEETQRESTEKKRTEPPEQARLEFLEKEPRKSSEEAGLEP--PEET 284
Query: 290 QAKVTLNICSRCARLQGDNLEERTEESLPILHSP----DEKIPDSF----------DSLP 335
Q +V + + +G L ERT+ P H P DE +P+ +S
Sbjct: 285 QPEVPEEMQRKATEEKGTELPERTKPDFPD-HKPRKSTDENVPEPLEEIKLEFPEEESRK 343
Query: 336 GTEEALMEEG--------DEFEKASKLTG---PGEASSGVGHSLKNYMEEDESLKQLQVV 384
EE ++E+ +E K+++ P E + + +EE K + +
Sbjct: 344 TNEETILEQSEMMKPESPEEIRKSNEKKNPQPPEETGPVLPQEINPQVEEKTQTKPTEKI 403
Query: 385 HQPWILPSDTESEGVEAEQEK 405
+ LP +T+ E K
Sbjct: 404 LE---LPDETKPRETHVEFSK 421
>gi|151301204 unc-51-like kinase 4 [Homo sapiens]
Length = 1275
Score = 35.0 bits (79), Expect = 0.13
Identities = 44/212 (20%), Positives = 80/212 (37%), Gaps = 19/212 (8%)
Query: 180 PPIPRSKNDQWESEDSGSSPAGSLKMEPKNKGLKQQQQQHKKLLAAMLSQDSFESIHSPT 239
PPIP+ + S D + G L+ +P+ + + QH A D S+ +
Sbjct: 238 PPIPKDSSRPKASSDFINLLDGLLQRDPQKRLTWTRLLQHSFWKKAFAGADQESSVEDLS 297
Query: 240 PSVTEEDIDNEDDAMELLEDLNDLRMEGVTTLVPSGSKFNQGRPTYPAEPQAKVTLNICS 299
S + D+ ELL++ + +G + P G F PT E + K T
Sbjct: 298 LSRNTMECSGPQDSKELLQNSQSRQAKGHKSGQPLGHSFRLENPT---EFRPKST----- 349
Query: 300 RCARLQGDNLEERTEESLPILHS-PDEKIPDSFDSLPGTEEALMEEGDEFEKASKLTGPG 358
LE + ES+ +L S P + + + PG E+ + +K+T
Sbjct: 350 ---------LEGQLNESMFLLSSRPTPRTSTAVEVSPG-EDMTHCSPQKTSPLTKITSGH 399
Query: 359 EASSGVGHSLKNYMEEDESLKQLQVVHQPWIL 390
+ + ++ + D L ++ P I+
Sbjct: 400 LSQQDLESQMRELIYTDSDLVVTPIIDNPKIM 431
>gi|22035682 DBF4 homolog B isoform 1 [Homo sapiens]
Length = 615
Score = 35.0 bits (79), Expect = 0.13
Identities = 45/172 (26%), Positives = 70/172 (40%), Gaps = 32/172 (18%)
Query: 43 ESEKSESKGTRRDFRSYDKPWQLNAK--KPKKSKSDLAVSNISPPSPDSKSLPRSVEHPK 100
E E + + F+S+ + L K P ++ + L + + S D + PRS H
Sbjct: 234 EDESRKFRPFHHQFKSFPEISFLGPKDASPFEAPTTLGSMHHTRESKDGEPSPRSAAH-- 291
Query: 101 WNWRTKPQSRD---------FDELNHILQESKKLGKALE-----NLSRSIAISDELDKET 146
T P+ + F+EL+ LQ ++ ALE + R IA +
Sbjct: 292 ----TMPRRKKGYCECCQEAFEELHVHLQSAQHRSFALEAHLYAEVDRIIAQLSHSFAD- 346
Query: 147 VTFNSSLLRPRVIGEWIGREENDADPLAAEML---QPPIPRSKNDQWESEDS 195
+ F + L R W G +D DPL E L QP PR+ + + EDS
Sbjct: 347 IPFQAGLPR------WSGSPASDCDPLCPETLHPHQPSHPRAASPRIRKEDS 392
>gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 3 [Homo sapiens]
Length = 568
Score = 34.3 bits (77), Expect = 0.22
Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 35/231 (15%)
Query: 35 SGSAALWAESEKSESKGTRRDFRSYDKPWQL---NAKKPKKSKSDLAVSNISPPSPDSKS 91
S S++ + S S S + S+ KP +L + +KP K + + P +KS
Sbjct: 169 SSSSSSSSSSSSSSSSSSSSSSTSFSKPHKLMKEHKEKPSKDSREHKSAFKEPSRDHNKS 228
Query: 92 LPRSVEHPKWNWRTKPQSRDFDELNHILQESKKLGKALENLSRSIAISDELDKETVTFN- 150
S + PK N KP + +E K + K + S + I+ DK+ +
Sbjct: 229 SKESSKKPKEN---KPLKEEKIVPKMAFKEPKPMSKEPKPDSNLLTITSGQDKKAPSKRP 285
Query: 151 --------SSLLRPRVIGEWIGREENDADPLAAEMLQPPIPRSKNDQWESEDSGSSPAGS 202
S+ R + E + + + A PL I D+ + +D G
Sbjct: 286 PISDSEELSAKKRKKSSSEALFKSFSSAPPL--------ILTCSADKKQIKDKSHVKMGK 337
Query: 203 LKMEPKNKGLKQQQQQHKKLLAAMLSQDSFESIHSPTPSVTEEDIDNEDDA 253
+K+E + K+ + F+ I P S EE+I ++ D+
Sbjct: 338 VKIESETSEKKKS------------TLPPFDDIVDPNDSDVEENISSKSDS 376
>gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens]
Length = 1163
Score = 34.3 bits (77), Expect = 0.22
Identities = 77/409 (18%), Positives = 150/409 (36%), Gaps = 42/409 (10%)
Query: 46 KSESKGTRRDFRSYDKPWQLNAKKPKKSKSDLAVSNISPPSPDSKSLPRSVEHPKW--NW 103
K ESK + R + K ++ +K +KS+ + S S +S+SLP S + PK+ +
Sbjct: 614 KKESKSSPRP-TAEKKKYKSTSKSSQKSREIIETDTSSSDSDESESLPPSSQTPKYPESN 672
Query: 104 RTKPQSRDFDELNHILQESKKLGKALENLSRSIAISDELDKETVTFNSSLLRPRVIGEWI 163
RT + +E + ++ ++ +E +S+ D+ + L ++
Sbjct: 673 RTPVKPSSVEEEDSFFRQ--RMFSPMEEKELLSPLSEPDDRYPLIVKIDL---NLLTRIP 727
Query: 164 GREENDADPLAAEMLQPPIPRSKNDQWES---------------EDSGSSPAGSLKMEPK 208
G+ + +P E P ++ Q ++ +D+ +S + K E K
Sbjct: 728 GKPYKETEPPKGEKKNVPEKHTREAQKQASEKVSNKGKRKHKNEDDNRASESKKPKTEDK 787
Query: 209 NK-GLKQQQQQHKKLLAAMLSQDSFESIHSPTPSVTEEDIDNEDDAMELLEDLNDLRMEG 267
N G K + +A +D S P PS ++ + + L+
Sbjct: 788 NSAGHKPSSNRESSKQSAAKEKDLLPSPAGPVPS--KDPKTEHGSRKRTISQSSSLKSSS 845
Query: 268 VTTLVPSGSKFNQGRPTYPAEPQAKVTLNICSRCARLQGDNLEERTEESLPIL-HSPDEK 326
+ SGS N + + + K + + S+ + + + S P L S +
Sbjct: 846 NSNKETSGSSKNSSSTSKQKKTEGKTSSS--SKEVKEKAPSSSSNCPPSAPTLDSSKPRR 903
Query: 327 IPDSFDSLPGTEEALMEE-----------GDEFEKASKLTGPGEASSGVGHSLKNYMEED 375
FD + + ++E D FEKA + G++L+ +E
Sbjct: 904 TKLVFDDRNYSADHYLQEAKKLKHNADALSDRFEKAVYYLDAVVSFIECGNALEKNAQES 963
Query: 376 ESLKQLQVVHQPWILPSDTESEGVEAEQEKRSADLLLCVPCSSCPTLVY 424
+S + + L T + +AD L V C C +L+Y
Sbjct: 964 KS--PFPMYSETVDLIKYTMKLKNYLAPDATAADKRLTVLCLRCESLLY 1010
>gi|4557509 cylicin 2 [Homo sapiens]
Length = 348
Score = 33.9 bits (76), Expect = 0.29
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
Query: 23 KQGNRGQLQRTLSGSAALWAESEKSESKGTRRDFRSYDKPWQLNAKKP--KKSKSDLAVS 80
K N+G+ T S +EK KG + + D +L A K KK + +
Sbjct: 194 KDSNKGKDSATESEGEK--GGTEKDSKKGKKDSKKGKDSAIELQAVKADEKKDEDGKKDA 251
Query: 81 NISPPSPDSKSLPRSVEHPKWNWRTKPQSRDFDELNHILQESKK 124
N S D+K + ++ K + + KP S D D + + +ESKK
Sbjct: 252 NKGDESKDAKKDAKEIKKGKKD-KKKPSSTDSDSKDDVKKESKK 294
>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
sapiens]
Length = 1912
Score = 33.9 bits (76), Expect = 0.29
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 164 GREENDADPLAAEMLQPPIPRSKNDQWESEDSGSSPAGSLKMEPKNK-----GLKQQQQQ 218
G EE D D L L PP P ++ D E +P K +PK ++Q++
Sbjct: 14 GSEEEDMDALLNNSLPPPHPENEEDPEEDLSETETPKLKKKKKPKKPRDPKIPKSKRQKK 73
Query: 219 HKKLLAAMLSQDSFESIHSPTPSVTEED 246
+ LL L S E P EE+
Sbjct: 74 ERMLLCRQLGDSSGEG-----PEFVEEE 96
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 33.9 bits (76), Expect = 0.29
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 18 DHLQSKQGNRGQLQRTLSGSAALWAESEKSESKGTRRDFRSYDKPWQLNAKKPKKSKS 75
D + + +R + TL G A +AES+ SE + + + ++ + N KKP K KS
Sbjct: 27 DKARESENSRPRRSCTLEGGAKNYAESDHSEDEDNDNNSATAEESTKKNKKKPPKKKS 84
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 33.9 bits (76), Expect = 0.29
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 18 DHLQSKQGNRGQLQRTLSGSAALWAESEKSESKGTRRDFRSYDKPWQLNAKKPKKSKS 75
D + + +R + TL G A +AES+ SE + + + ++ + N KKP K KS
Sbjct: 27 DKARESENSRPRRSCTLEGGAKNYAESDHSEDEDNDNNSATAEESTKKNKKKPPKKKS 84
>gi|14141161 heterogeneous nuclear ribonucleoprotein U isoform b
[Homo sapiens]
Length = 806
Score = 33.1 bits (74), Expect = 0.49
Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 23/124 (18%)
Query: 160 GEWIGREENDADPLAAEMLQPPIPRSKNDQWESEDSGSSPAGSLKMEP------------ 207
G+ G E P A + QP R + + SG + ++ + P
Sbjct: 153 GDENGHGEQQPQPPATQQQQPQQQRGAAKEAAGKSSGPTSLFAVTVAPPGARQGQQQAGG 212
Query: 208 ----------KNKGLKQQQQQHKKLLAAMLSQDSFESIHSPTPSVTEEDIDNEDDAMELL 257
K +G+K+ ++ H + + ++ + SP P V EED ++ DD + L
Sbjct: 213 DGKTEQKGGDKKRGVKRPREDHGRGYFEYIEENKYSRAKSPQPPVEEED-EHFDDTVVCL 271
Query: 258 EDLN 261
+ N
Sbjct: 272 DTYN 275
>gi|100816397 MYST histone acetyltransferase (monocytic leukemia) 4
[Homo sapiens]
Length = 2073
Score = 33.1 bits (74), Expect = 0.49
Identities = 33/164 (20%), Positives = 70/164 (42%), Gaps = 9/164 (5%)
Query: 118 ILQESKKLGKALENLSRSIAISDELDKETVTFNSSLLRPRVIGEWIGREENDADPLAAEM 177
I++ K + +E L ++ + ++ELD +++ + L+ + E EE +A+ A +
Sbjct: 957 IIRREKLILSHMEKL-KTCSRANELDPDSLRWTPILISNAAVSE----EEREAEKEAERL 1011
Query: 178 LQPPIPRSKNDQWESEDSGSSPAGSLKMEPKNKGLKQQQQQ----HKKLLAAMLSQDSFE 233
++ K +Q +S K++ KNK L + + + L + + S E
Sbjct: 1012 MEQASCWEKEEQEILSTRANSRQSPAKVQSKNKYLHSPESRPVTGERGQLLELSKESSEE 1071
Query: 234 SIHSPTPSVTEEDIDNEDDAMELLEDLNDLRMEGVTTLVPSGSK 277
EE+ + E+D E E+ + E + + P +K
Sbjct: 1072 EEEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEENIQSSPPRLTK 1115
>gi|74136883 heterogeneous nuclear ribonucleoprotein U isoform a
[Homo sapiens]
Length = 825
Score = 32.7 bits (73), Expect = 0.65
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 196 GSSPAGSLKMEPKN----KGLKQQQQQHKKLLAAMLSQDSFESIHSPTPSVTEEDIDNED 251
G+ AG K E K +G+K+ ++ H + + ++ + SP P V EED ++ D
Sbjct: 226 GAPAAGDGKTEQKGGDKKRGVKRPREDHGRGYFEYIEENKYSRAKSPQPPVEEED-EHFD 284
Query: 252 DAMELLEDLN 261
D + L+ N
Sbjct: 285 DTVVCLDTYN 294
>gi|54792092 ATM interactor [Homo sapiens]
Length = 823
Score = 32.7 bits (73), Expect = 0.65
Identities = 46/211 (21%), Positives = 79/211 (37%), Gaps = 25/211 (11%)
Query: 200 AGSLKMEPKNKGLKQQQQQHKKLLAAMLSQDSFESIHSPTPSVTEEDIDNEDDAMELLED 259
+G + E + G++ H ++ A + D FES+HS T I N A +
Sbjct: 486 SGGVSRETQTSGIESPTDDHVQMDQAGMCGDIFESVHSSYNVATGNIISNSLVAETVTHS 545
Query: 260 LNDLRMEGVTTL---------VPSGSKFNQGRPTYPAEPQAKVTLNICSRCARLQGDNLE 310
L L TL + + S N P+ T+++ S + NL
Sbjct: 546 L--LPQNEPKTLNQDIEKSAPIINFSAQNSMLPSQNMTDNQTQTIDLLSDLENILSSNLP 603
Query: 311 ERTEESLPILH----SPDEKIPDSFDSLPGTEEALMEEGDEFEKASKLTGPGEASSGVGH 366
+T + +L PD ++P PG + + +EF AS + E S
Sbjct: 604 AQTLDHRSLLSDTNPGPDTQLPSGPAQNPGIDFDI----EEFFSASNIQTQTEESE---- 655
Query: 367 SLKNYMEEDESLKQLQVVHQPWILPSDTESE 397
+ M + L+ L + Q L +DT ++
Sbjct: 656 --LSTMTTEPVLESLDIETQTDFLLADTSAQ 684
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 32.3 bits (72), Expect = 0.84
Identities = 53/205 (25%), Positives = 82/205 (40%), Gaps = 43/205 (20%)
Query: 30 LQRTLSGSAALWAESEKSESKGTRRDF-------RSYDKPWQLNAKKPK---KSKSDLAV 79
++ +S A+ E KS++KG DF S D L K K + +SD V
Sbjct: 1315 IEEKVSDLASRGQEPSKSKTKGN--DFFIDDSKLASADDIGTLICKNKKPLIQEESDTIV 1372
Query: 80 SNISPPSPDSKSLPRSVEHPKWNWRTKPQSRDFDELNHILQESKKLG------KALENLS 133
S S S S+P+S RD L+ + KLG LEN S
Sbjct: 1373 S--SSKSALHSSVPKSTN-----------DRDATPLSRAMDFEGKLGCDSESNSTLENSS 1419
Query: 134 RSIAISDELDKETVTFNSSLLRPRVIGEWIGREENDA---DPLAAEMLQPPIPRSKNDQW 190
+++I D +++ + NS+ I E E D +PL E++ + D+
Sbjct: 1420 DTVSIQDSSEEDMIVQNSN----ESISEQFRTREQDVEVLEPLKCELVSGESTGNCEDRL 1475
Query: 191 E---SEDSGSSPAGSLKME--PKNK 210
+E +G P+ K+E P NK
Sbjct: 1476 PVKGTEANGKKPSQQKKLEERPVNK 1500
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 32.3 bits (72), Expect = 0.84
Identities = 53/205 (25%), Positives = 82/205 (40%), Gaps = 43/205 (20%)
Query: 30 LQRTLSGSAALWAESEKSESKGTRRDF-------RSYDKPWQLNAKKPK---KSKSDLAV 79
++ +S A+ E KS++KG DF S D L K K + +SD V
Sbjct: 1189 IEEKVSDLASRGQEPSKSKTKGN--DFFIDDSKLASADDIGTLICKNKKPLIQEESDTIV 1246
Query: 80 SNISPPSPDSKSLPRSVEHPKWNWRTKPQSRDFDELNHILQESKKLG------KALENLS 133
S S S S+P+S RD L+ + KLG LEN S
Sbjct: 1247 S--SSKSALHSSVPKSTN-----------DRDATPLSRAMDFEGKLGCDSESNSTLENSS 1293
Query: 134 RSIAISDELDKETVTFNSSLLRPRVIGEWIGREENDA---DPLAAEMLQPPIPRSKNDQW 190
+++I D +++ + NS+ I E E D +PL E++ + D+
Sbjct: 1294 DTVSIQDSSEEDMIVQNSN----ESISEQFRTREQDVEVLEPLKCELVSGESTGNCEDRL 1349
Query: 191 E---SEDSGSSPAGSLKME--PKNK 210
+E +G P+ K+E P NK
Sbjct: 1350 PVKGTEANGKKPSQQKKLEERPVNK 1374
>gi|116268091 PHD finger protein 23 [Homo sapiens]
Length = 403
Score = 32.0 bits (71), Expect = 1.1
Identities = 21/68 (30%), Positives = 31/68 (45%)
Query: 356 GPGEASSGVGHSLKNYMEEDESLKQLQVVHQPWILPSDTESEGVEAEQEKRSADLLLCVP 415
G GE S + S K +++ E +L P PSDT+SE E E+E+ + + V
Sbjct: 207 GDGEKRSRIKKSKKRKLKKAERGDRLPPPGPPQAPPSDTDSEEEEEEEEEEEEEEMATVV 266
Query: 416 CSSCPTLV 423
P V
Sbjct: 267 GGEAPVPV 274
>gi|108773808 hypothetical protein LOC51244 [Homo sapiens]
Length = 467
Score = 32.0 bits (71), Expect = 1.1
Identities = 49/246 (19%), Positives = 90/246 (36%), Gaps = 46/246 (18%)
Query: 38 AALWAESEKSESKGTRRDFRSYDKPWQLNAKKPKKSKSDLAVSNISPPSPDSKSLPRSVE 97
A L+ + E+ + + +D + KP N K SK ++ VSN + + K
Sbjct: 20 AELFRKQEEFKQEKLLKDSGVFGKPKTTNKKPSIWSKQNVGVSNRAEKDAEQKI------ 73
Query: 98 HPKWNWRTKPQSRDFDELNHILQESKKLGKALENLSRSIAISDEL-DKETVTFNSSLLRP 156
+ + D+ L+E KL E +++ I +E+ D V F ++
Sbjct: 74 ---------EEQKTLDKAREKLEEKAKL---YEKMTKGDFIDEEVEDMYLVDFTQKIIDK 121
Query: 157 RVIGEWIGRE-------ENDADPLAAEMLQPPIPRSKNDQW------------------- 190
R E G E D D + P P+ +++W
Sbjct: 122 RKEMEASGAHRDSQKAGERDDDEENLPEGEIPPPQDPSEEWVDYVDSLGRSRRCMRKDLP 181
Query: 191 ESEDSGSSPAGSLKMEPKNKGLKQQQQQHKKLLAAMLSQDSFESIHSPTPSVTEEDIDNE 250
+ + + G L + P N+ + K+L ++ E++ P V EDI E
Sbjct: 182 DLLEMDKNLQGRLFISPANEKTLLSEDMRKELQRQQWEEEEREALKRPMGPVHYEDI-RE 240
Query: 251 DDAMEL 256
++A +L
Sbjct: 241 NEARQL 246
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 32.0 bits (71), Expect = 1.1
Identities = 47/207 (22%), Positives = 79/207 (38%), Gaps = 21/207 (10%)
Query: 8 TPDQPIPFLIDHLQSKQGNRGQLQRTLSGSAALWAESEKSESKGTRRDFRSYDKPWQLNA 67
TP + +P H +S R ++R SA+L S S S +R + KP + +
Sbjct: 327 TPPRRMPPPPRHRRS----RSPVRRRRRSSASLSGSSSSSSSSRSRSPPK---KPPKRTS 379
Query: 68 KKPKKSKSDLAVSNISPPSPDSKSLPRSVEHPKWNWRTKPQSRDFDELNHI-LQESKKLG 126
P+K++ + SPP + P + PK PQ + + + + + G
Sbjct: 380 SPPRKTRR--LSPSASPPRRRHRPSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSG 437
Query: 127 KALENLSRSIAISDELDKETVTFNSSLLRPRVIGEWIGREENDADPLAAEMLQPPIPRSK 186
K ++ E S +PR + E+ AA+ +Q +
Sbjct: 438 K----------VTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAAADSVQQRRQYRR 487
Query: 187 NDQWESEDSGSSPAGSLKMEPKNKGLK 213
+Q S DSGSS + S PK +K
Sbjct: 488 QNQQSSSDSGSS-SSSEDERPKRSHVK 513
>gi|239745299 PREDICTED: hypothetical protein [Homo sapiens]
Length = 523
Score = 31.6 bits (70), Expect = 1.4
Identities = 51/240 (21%), Positives = 91/240 (37%), Gaps = 23/240 (9%)
Query: 112 FDELNHILQESKKLGKAL-ENLSRSIAISDELDKETVTFNSSLLRPRVIGEWIGREENDA 170
+ EL L S + L EN++ + S E K + L R + A
Sbjct: 91 YQELAVALDSSSAIISQLTENINSLVRTSKEEKKHEIHLVQKLGR-----SLFKLKNQTA 145
Query: 171 DPLAAEMLQPPIPRSKNDQWESEDSGSSPAGSLKMEPKNKGLKQQQQQHKKLLAAMLSQD 230
+PLA E PP SK +Q + E + L+ E ++ G + Q + + ++L++
Sbjct: 146 EPLAPE---PPAGPSKVEQLQDETN------HLRKELESVGRQLQAEVENNQMLSLLNRR 196
Query: 231 SFESIHSPTPSVTEEDIDNEDDAMELLEDLNDLRMEGVTTLVPSGSKFNQGRPTYPAEPQ 290
E + + E++ + L E LR + + + R E
Sbjct: 197 QEERLREQEERLREQEERLREQEERLCEQEERLREQ------EERLREQEERLCEQEERL 250
Query: 291 AKVTLNICSRCARLQGDNLEERTEESLPILHSPDEKIPDSFDSLPGTEEALMEEGDEFEK 350
+ +C + RL EER E LH +E++ + + L EE L E+ + +
Sbjct: 251 REHEERLCEQEERLCEQ--EERLREQEERLHEQEERLCEQEERLREQEERLCEQEERLRE 308
>gi|24429588 zinc finger protein 532 [Homo sapiens]
Length = 1301
Score = 31.6 bits (70), Expect = 1.4
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 179 QPPIPRSKNDQWESEDSGSSPAGSLKMEPK--NKGLKQQQQQHKKLLAAMLSQDSFESIH 236
QP PRS + + S+ S SSPAGS PK K +K + K+ + +L + +S
Sbjct: 331 QPDSPRSISSENSSKGSPSSPAGSTPAIPKVRIKTIKTSSGEIKRTVTRVLPEVDLDSGK 390
Query: 237 SPT 239
P+
Sbjct: 391 KPS 393
>gi|67551265 transcription factor ELYS [Homo sapiens]
Length = 2266
Score = 31.6 bits (70), Expect = 1.4
Identities = 46/196 (23%), Positives = 72/196 (36%), Gaps = 18/196 (9%)
Query: 75 SDLAVSNISPPSPDSKSLPRSVEHPKWNWRTKPQSRDFDELNHILQESKKLGKALE---- 130
+DL VS ++ PS + L + N K + D+ I + G+ +
Sbjct: 1889 NDLKVSTVTSPSRMIRKLRSTNLDASENTGNKQDDKSSDKQLRIKHVRRVRGREVSPSDV 1948
Query: 131 ----NLSRS-IAISDELDKETVTFNSSLLRPRVIG--EWIG----REENDADPLAAEMLQ 179
NL S + + E D + RPR I E +G +EE A ++
Sbjct: 1949 REDSNLESSQLTVQAEFDMSAIPRKRG--RPRKINPSEDVGSKAVKEERSPKKKEAPSIR 2006
Query: 180 PPIPRSKNDQWESEDSGSSPAGSLKMEPKNKGLKQQQQQHKKLLAAMLSQDSFESIHSPT 239
R+ + E+ D G G + P N+ L KKL SQ S+HS +
Sbjct: 2007 RRSTRNTPAKSENVDVGKPALGKSILVP-NEELSMVMSSKKKLTKKTESQSQKRSLHSVS 2065
Query: 240 PSVTEEDIDNEDDAME 255
T+E E + E
Sbjct: 2066 EERTDEMTHKETNEQE 2081
>gi|41281808 harmonin isoform b3 [Homo sapiens]
Length = 899
Score = 31.2 bits (69), Expect = 1.9
Identities = 54/256 (21%), Positives = 102/256 (39%), Gaps = 25/256 (9%)
Query: 55 DFRSYDKPWQLNAKKPKKSK--SDLAVSNISPPSPDSKSLPRSVEHPKWNWRTKPQSRDF 112
DF + D +N K +S S +A + D + L + + Q R
Sbjct: 265 DFSNLDHKEAVNVLKSSRSLTISIVAAAGRELFMTDRERLAEARQRELQRQELLMQKRLA 324
Query: 113 DELNHILQESKKLGKAL-ENLSRSIAISDEL---DKETVTFNSSLLRPRVIGEWIGREEN 168
E N ILQE +++ + + +++ A +E + E + + + +W G +E
Sbjct: 325 MESNKILQEQQEMERQRRKEIAQKAAEENERYRKEMEQIVEEEEKFKKQWEEDW-GSKEQ 383
Query: 169 DADP--LAAEMLQPPIPRSKNDQW-------------ESEDSGSSPAGSLKMEPKNKGLK 213
P + AE+ P+ + K+ W + +D + GSL+ KNK
Sbjct: 384 LLLPKTITAEVHPVPLRKPKSFGWFYRYDGKFPTIRKKGKDKKKAKYGSLQDLRKNKKEL 443
Query: 214 QQQQQHKKLLAAMLSQDSFESIHSPTPSVTE---EDIDNEDDAMELLEDLNDLRMEGVTT 270
+ +Q+ K ML ++ I+ V+E ED++ + +E L R+E +++
Sbjct: 444 EFEQKLYKEKEEMLEKEKQLKINRLAQEVSETEREDLEESEKIQYWVERLCQTRLEQISS 503
Query: 271 LVPSGSKFNQGRPTYP 286
S+ G P P
Sbjct: 504 ADNEISEMTTGPPPPP 519
>gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-like
[Homo sapiens]
Length = 899
Score = 31.2 bits (69), Expect = 1.9
Identities = 68/388 (17%), Positives = 133/388 (34%), Gaps = 86/388 (22%)
Query: 21 QSKQGNRGQLQRTLSGSAALWAESEKSESKGTRRDFRSYDKPWQLNAKKPKKSKSDLAVS 80
Q KQ R Q Q+ +W + E+ K R R +K W+ K ++ K
Sbjct: 381 QEKQ-MREQEQKMRDQEERMWEQDERLREKEER--MREQEKMWEQVEKMREEKKMQ---- 433
Query: 81 NISPPSPDSKSLPRSVEHPKWNWRTKPQSRDFDELNHILQESKKLGKALENLSRSIAISD 140
E K +T+ Q E I + KK+ + E + +
Sbjct: 434 ----------------EQEK---KTRDQEEKMQEEERIREREKKMREEEETMREQ---EE 471
Query: 141 ELDKETVTFNSSLLRPRVIGEWIGREENDADPLAAEMLQPPIPRSKNDQWESEDSGSSPA 200
++ K+ EEN + E Q +P K WE E
Sbjct: 472 KMQKQ--------------------EENMWEQEEKEWQQQRLPEQKEKLWEQEKMQEQEE 511
Query: 201 GSLKMEPKNKGLKQQQQQHKKLLAAMLSQDSFESIHSPTPSVTEEDIDNEDDAMELLEDL 260
+ E K + ++ Q KK+ E + + E++ D ++ +
Sbjct: 512 KIWEQEEKIRDQEEMWGQEKKMWRQ-------EKMREQEDQMWEQEEKMRDQEQKMWD-- 562
Query: 261 NDLRMEGVTTLVPSGSKFNQGRPTYPAEPQAKVTLNICSRCARLQGDNLEERTEESLPIL 320
+ RME T Q + T+ E + + + R E++ E ++
Sbjct: 563 QEERMEKKTQ--------EQEKKTWDQEEKMREEERMRER---------EKKMREEEEMM 605
Query: 321 HSPDEKIPDSFDSLPGTEEALMEEGDEFEKASKLTGPGEASSGVGHSLKNYMEEDESLKQ 380
+EK+ + + + EE + E+ ++ ++ + E K + +E++ +Q
Sbjct: 606 REQEEKMQEQEEKMQEQEEKMWEQEEKMQEQEEKMWEQEE--------KMWEQEEKMWEQ 657
Query: 381 LQVVHQP---WILPSDTESEGVEAEQEK 405
++ Q W E E ++ ++EK
Sbjct: 658 QRLPEQKEKLWEHEKMQEQEKMQEQEEK 685
>gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 31.2 bits (69), Expect = 1.9
Identities = 85/414 (20%), Positives = 150/414 (36%), Gaps = 90/414 (21%)
Query: 57 RSYDKP-WQLNAKK--PKKSKSDLAVSNISPPSPDSKSLPRSVEHPKWNWRTKPQSRDFD 113
RS +P W KK P K K++ + +S P+ D+ + E + D
Sbjct: 5518 RSGKRPEWLFTGKKAQPVKYKTETLTAFLSYPTMDATKMGGLEE----------DTEIMD 5567
Query: 114 ELNHILQES------KKLGKAL------ENLSRSIAISDELDKETVTFNSSLLRPRVIGE 161
LNH + +K+ K L S+ ++S+ + T SS + P + G
Sbjct: 5568 NLNHKISPKASVSLIRKISKELYVTLGTPASSKGFSVSERYAHQQET--SSKVSPELAGS 5625
Query: 162 WI---GREENDADPLAAEMLQPPI--PRSKNDQWESE--DSGSSPAGSLKME--PKNKGL 212
+E+ ++ ++M P + P++K + + ++P + + K + +
Sbjct: 5626 CKFDKPKEDGQSNDRISKMFSPKVLAPQTKGSLKKISIVTNWNAPQNIEEQDIVMKKQVI 5685
Query: 213 KQQQQQHKKLLAAMLSQDSFESIHSPTPSVTEEDIDNEDDAMELLEDLNDLRM------- 265
++ + HK +LS+ +S TPS E D+D + A L+ L + M
Sbjct: 5686 RRCEHGHKTRTNTILSKFPLQSGKQKTPS--ETDVDKKTTAHLSLQMLPGIHMDMTEIDP 5743
Query: 266 ---------------EGVTTLVPSG------SKFNQGRPTYPAEPQAKVTLNICSRCARL 304
EGV L+P +F G + A +N+ + +
Sbjct: 5744 AKGGRKQALLISEQEEGVLELLPKSLFPPWTFQFQSGDLEEKHQTDANTNINLEQKKLEM 5803
Query: 305 QGDNLEERTEESLPILHSPDEKIPDSFDSLPGTEEA--LMEEGDEFEKA-----SKLTGP 357
D+ + E L I GT A L EE E KA K G
Sbjct: 5804 DNDSTVNQKEGKLKI----------------GTNRALHLQEEKTEMHKARTANLEKERGR 5847
Query: 358 GEASSGVGHSLKNYMEEDESLKQLQVVH-QPWILPSDTESEGVEAEQEKRSADL 410
+ SS L + E+ +K + H + L + + +EA K+S L
Sbjct: 5848 MDTSSSAHPHLPSLKAEESQMKTQVITHRENSRLIMQKQKKELEASNAKQSIQL 5901
>gi|38327032 ubiquitin-activating enzyme 5 isoform 2 [Homo sapiens]
Length = 348
Score = 31.2 bits (69), Expect = 1.9
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 13/100 (13%)
Query: 199 PAGSLKMEPK--NKGLKQQQQQHKKLLAAMLSQDSFESIHSPTPSVTEEDIDNEDD--AM 254
P S+K P+ ++ ++QQ+++KK +AA+ Q+ + EE+I +ED+ +
Sbjct: 237 PTMSMKPNPQCDDRNCRKQQEEYKKKVAALPKQEVIQE---------EEEIIHEDNEWGI 287
Query: 255 ELLEDLNDLRMEGVTTLVPSGSKFNQGRPTYPAEPQAKVT 294
EL+ ++++ ++ + VP + T P + + VT
Sbjct: 288 ELVSEVSEEELKNFSGPVPDLPEGITVAYTIPKKQEDSVT 327
>gi|13376212 ubiquitin-activating enzyme 5 isoform 1 [Homo sapiens]
Length = 404
Score = 31.2 bits (69), Expect = 1.9
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 13/100 (13%)
Query: 199 PAGSLKMEPK--NKGLKQQQQQHKKLLAAMLSQDSFESIHSPTPSVTEEDIDNEDD--AM 254
P S+K P+ ++ ++QQ+++KK +AA+ Q+ + EE+I +ED+ +
Sbjct: 293 PTMSMKPNPQCDDRNCRKQQEEYKKKVAALPKQEVIQE---------EEEIIHEDNEWGI 343
Query: 255 ELLEDLNDLRMEGVTTLVPSGSKFNQGRPTYPAEPQAKVT 294
EL+ ++++ ++ + VP + T P + + VT
Sbjct: 344 ELVSEVSEEELKNFSGPVPDLPEGITVAYTIPKKQEDSVT 383
>gi|114155142 nuclear pore complex-associated protein TPR [Homo
sapiens]
Length = 2363
Score = 31.2 bits (69), Expect = 1.9
Identities = 46/204 (22%), Positives = 86/204 (42%), Gaps = 40/204 (19%)
Query: 96 VEHPKWNWRTKPQSRDFDELNHILQESKKLGKALENLSRSIAISDELDKETVTFNSSLLR 155
VE ++ R + R+ EL L ++ ++ ++++A +EL K+T T N +
Sbjct: 1219 VESLRYRQRVELLERELQELQDSLNAERE---KVQVTAKTMAQHEELMKKTETMNVVMET 1275
Query: 156 PRVIGEWIGREENDADPLAAEMLQ---PPIPRSKNDQWESEDSGSSPAGSLKME------ 206
+++ E R E D + A++ + +P + + SE SG A +E
Sbjct: 1276 NKMLREEKERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRW 1335
Query: 207 -PKNKGLKQQQ-----QQHKKLLAAMLSQDSFESIHSPTPSVTEEDI------------- 247
+N+ L QQ ++++KLL S + +H+ E+I
Sbjct: 1336 KARNQHLVSQQKDPDTEEYRKLL-------SEKEVHTKRIQQLTEEIGRLKAEIARSNAS 1388
Query: 248 --DNEDDAMELLEDLNDLRMEGVT 269
+N++ L EDLN +R E T
Sbjct: 1389 LTNNQNLIQSLKEDLNKVRTEKET 1412
>gi|44888833 PDZ domain containing 6 [Homo sapiens]
Length = 942
Score = 31.2 bits (69), Expect = 1.9
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 169 DADPLAAEMLQPPIPRSKNDQWESED----SGSSPAGSLKMEPKNKGLKQQQQQHKKLLA 224
D+ P + E+ P + +++ ++ ED SGS + S + Q++ +L
Sbjct: 8 DSRPSSDELPGDPSSQEEDEDYDFEDRVSDSGSYSSASSDYDDLEPEWLDSVQKNGELFY 67
Query: 225 AMLSQDSFESIHSPTPSV-----TEEDIDNEDDAME 255
LS+D ES+ TP+V +E +I EDD E
Sbjct: 68 LELSEDEEESLLPETPTVNHVRFSENEIIIEDDYKE 103
>gi|59709436 tumor necrosis factor, alpha-induced protein 8-like 3
[Homo sapiens]
Length = 292
Score = 31.2 bits (69), Expect = 1.9
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Query: 167 ENDADPLAAEMLQPPIPRSKNDQWE-SEDSGSSPAGSLKMEPKNKGLKQQQQQHKKL--- 222
E AD A QP +D E SE + AG K+ L+ Q++ K+
Sbjct: 71 ERPADGRVAVDAQPAARSMDSDSGEQSEGEPVTAAGPDVFSSKSLALQAQKKILSKIASK 130
Query: 223 -LAAMLSQDSFESIHSPTPSVTEEDIDNEDDAMELLEDL 260
+A ML D+ I VT+E N+ +A ++++DL
Sbjct: 131 TVANMLIDDTSSEIFDELYKVTKEHTHNKKEAHKIMKDL 169
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.127 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,383,372
Number of Sequences: 37866
Number of extensions: 899401
Number of successful extensions: 3336
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 3285
Number of HSP's gapped (non-prelim): 122
length of query: 427
length of database: 18,247,518
effective HSP length: 105
effective length of query: 322
effective length of database: 14,271,588
effective search space: 4595451336
effective search space used: 4595451336
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.