Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: UBA5 Sequence: fasta or formatted (404aa) NCBI GI: 13376212
Description:

ubiquitin-activating enzyme 5 isoform 1

Referenced in:

Ubiquitin and Related Protein Modifications

Other entries for this name:
alt prot [348aa] ubiquitin-activating enzyme 5 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         26           2
 C cysteine            2.0          8           1
 D aspartate           4.5         18           2
 E glutamate          10.6         43           4
 F phenylalanine       3.7         15           2
 G glycine             7.2         29           4
 H histidine           1.5          6           1
 I isoleucine          5.0         20           2
 K lysine              5.2         21           3
 L leucine             8.7         35           3
 M methionine          4.0         16           1
 N asparagine          5.4         22           1
 P proline             4.2         17           2
 Q glutamine           4.7         19           2
 R arginine            4.5         18           1
 S serine              6.2         25           2
 T threonine           4.5         18           2
 V valine              9.4         38           2
 W tryptophan          0.5          2           1
 Y tyrosine            2.0          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin-activating enzyme 5 isoform 1 
UBA5                  0.865   ubiquitin-activating enzyme 5 isoform 2 
MOCS3                 0.054   molybdenum cofactor synthesis 3 
UBA2                  0.048   SUMO-1 activating enzyme subunit 2 
UBA1                  0.035   ubiquitin-activating enzyme E1 
UBA1                  0.035   ubiquitin-activating enzyme E1 
UBA6                  0.035   ubiquitin-activating enzyme E1-like 2 
UBA7                  0.032   ubiquitin-like modifier activating enzyme 7 
UBA3                  0.030   ubiquitin-activating enzyme 3 isoform 1 
UBA3                  0.028   ubiquitin-activating enzyme 3 isoform 2 
NIN                   0.015   ninein isoform 4 
NIN                   0.015   ninein isoform 5 
NIN                   0.015   ninein isoform 1 
NIN                   0.015   ninein isoform 2 
SAE1                  0.013   SUMO1 activating enzyme subunit 1 isoform c 
SAE1                  0.013   SUMO1 activating enzyme subunit 1 isoform b 
SAE1                  0.013   SUMO1 activating enzyme subunit 1 isoform a 
SAE1                  0.013   SUMO1 activating enzyme subunit 1 isoform a 
C3orf44               0.010   hypothetical protein LOC131831 
WDR87                 0.010   NYD-SP11 protein 
PCLO                  0.009   piccolo isoform 2 
PCLO                  0.009   piccolo isoform 1 
TTN                   0.009   titin isoform N2-A 
FEZ1                  0.008   zygin 1 isoform 1 
C8orf34               0.008   hypothetical protein LOC116328 
MYST4                 0.008   MYST histone acetyltransferase (monocytic leukemia)...
NAE1                  0.008   NEDD8 activating enzyme E1 subunit 1 isoform b [Homo...
NAE1                  0.008   NEDD8 activating enzyme E1 subunit 1 isoform a 
SOCS7                 0.008   suppressor of cytokine signaling 7 
HECW1                 0.006   NEDD4-like ubiquitin-protein ligase 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press