Guide to the Human Genome
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Name: TNFAIP8L3 Sequence: fasta or formatted (292aa) NCBI GI: 59709436
Description:

tumor necrosis factor, alpha-induced protein 8-like 3

Referenced in:

TNF and Related Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         22           2
 C cysteine            1.4          4           1
 D aspartate           5.5         16           2
 E glutamate           6.8         20           2
 F phenylalanine       3.4         10           1
 G glycine             5.1         15           1
 H histidine           3.4         10           1
 I isoleucine          5.1         15           1
 K lysine              8.2         24           2
 L leucine            11.3         33           2
 M methionine          1.7          5           1
 N asparagine          4.5         13           2
 P proline             4.5         13           1
 Q glutamine           4.1         12           1
 R arginine            5.5         16           1
 S serine              7.2         21           2
 T threonine           5.8         17           1
 V valine              6.5         19           1
 W tryptophan          0.3          1           1
 Y tyrosine            2.1          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor necrosis factor, alpha-induced protein 8-like ... 
TNFAIP8               0.425   tumor necrosis factor, alpha-induced protein 8 isof...
TNFAIP8               0.420   tumor necrosis factor, alpha-induced protein 8 isof...
TNFAIP8L1             0.337   tumor necrosis factor, alpha-induced protein 8-like ...
TNFAIP8L2             0.332   tumor necrosis factor, alpha-induced protein 8-like...
CCDC146               0.023   coiled-coil domain containing 146 
KIF5B                 0.018   kinesin family member 5B 
SCLT1                 0.016   sodium channel associated protein 1 
C8orf34               0.011   hypothetical protein LOC116328 
SMARCA4               0.009   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.009   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.009   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.009   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.009   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.009   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.009   SWI/SNF-related matrix-associated actin-dependent re...
MYO7A                 0.009   myosin VIIA isoform 2 
MYO7A                 0.009   myosin VIIA isoform 3 
MYO7A                 0.009   myosin VIIA isoform 1 
ARMCX2                0.009   ALEX2 protein 
ARMCX2                0.009   ALEX2 protein 
CENPJ                 0.009   centromere protein J 
INO80                 0.009   INO80 complex homolog 1 
NINL                  0.007   ninein-like 
NHS                   0.007   Nance-Horan syndrome protein isoform 1 
NHS                   0.007   Nance-Horan syndrome protein isoform 2 
TJP1                  0.007   tight junction protein 1 isoform b 
TJP1                  0.007   tight junction protein 1 isoform a 
MAST2                 0.007   microtubule associated serine/threonine kinase 2 [H...
EEA1                  0.007   early endosome antigen 1, 162kD 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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