Guide to the Human Genome
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Name: UBA5 Sequence: fasta or formatted (348aa) NCBI GI: 38327032
Description:

ubiquitin-activating enzyme 5 isoform 2

Referenced in:

Ubiquitin and Related Protein Modifications

Other entries for this name:
alt prot [404aa] ubiquitin-activating enzyme 5 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         24           2
 C cysteine            2.3          8           1
 D aspartate           4.6         16           2
 E glutamate          10.1         35           4
 F phenylalanine       4.3         15           2
 G glycine             6.9         24           2
 H histidine           1.7          6           1
 I isoleucine          5.5         19           2
 K lysine              5.7         20           3
 L leucine             8.6         30           3
 M methionine          4.0         14           1
 N asparagine          6.0         21           1
 P proline             4.3         15           2
 Q glutamine           4.0         14           2
 R arginine            2.9         10           1
 S serine              5.2         18           1
 T threonine           5.2         18           2
 V valine              9.2         32           2
 W tryptophan          0.6          2           1
 Y tyrosine            2.0          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin-activating enzyme 5 isoform 2 
UBA5                  1.000   ubiquitin-activating enzyme 5 isoform 1 
MOCS3                 0.055   molybdenum cofactor synthesis 3 
UBA2                  0.055   SUMO-1 activating enzyme subunit 2 
UBA1                  0.040   ubiquitin-activating enzyme E1 
UBA1                  0.040   ubiquitin-activating enzyme E1 
UBA6                  0.040   ubiquitin-activating enzyme E1-like 2 
UBA7                  0.037   ubiquitin-like modifier activating enzyme 7 
UBA3                  0.033   ubiquitin-activating enzyme 3 isoform 2 
UBA3                  0.033   ubiquitin-activating enzyme 3 isoform 1 
NIN                   0.018   ninein isoform 4 
NIN                   0.018   ninein isoform 5 
NIN                   0.018   ninein isoform 1 
NIN                   0.018   ninein isoform 2 
SAE1                  0.015   SUMO1 activating enzyme subunit 1 isoform c 
SAE1                  0.015   SUMO1 activating enzyme subunit 1 isoform b 
SAE1                  0.015   SUMO1 activating enzyme subunit 1 isoform a 
SAE1                  0.015   SUMO1 activating enzyme subunit 1 isoform a 
C3orf44               0.012   hypothetical protein LOC131831 
WDR87                 0.012   NYD-SP11 protein 
PCLO                  0.010   piccolo isoform 2 
PCLO                  0.010   piccolo isoform 1 
TTN                   0.010   titin isoform N2-A 
FEZ1                  0.009   zygin 1 isoform 1 
C8orf34               0.009   hypothetical protein LOC116328 
MYST4                 0.009   MYST histone acetyltransferase (monocytic leukemia)...
NAE1                  0.009   NEDD8 activating enzyme E1 subunit 1 isoform b [Homo...
NAE1                  0.009   NEDD8 activating enzyme E1 subunit 1 isoform a 
RSF1                  0.007   remodeling and spacing factor 1 
ANKRD11               0.007   ankyrin repeat domain 11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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