Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: C1orf26 Sequence: fasta or formatted (900aa) NCBI GI: 157502207
Description:

hypothetical protein LOC54823

Referenced in:

Telomere Functions

Other entries for this name:
alt mRNA [900aa] hypothetical protein LOC54823
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7         33           2
 C cysteine            1.9         17           2
 D aspartate           5.0         45           2
 E glutamate           7.7         69           2
 F phenylalanine       3.0         27           1
 G glycine             3.2         29           1
 H histidine           2.8         25           2
 I isoleucine          5.9         53           2
 K lysine             10.0         90           2
 L leucine            10.8         97           3
 M methionine          1.8         16           1
 N asparagine          5.9         53           2
 P proline             2.9         26           2
 Q glutamine           5.4         49           2
 R arginine            4.8         43           3
 S serine             11.2        101           4
 T threonine           5.4         49           3
 V valine              5.1         46           2
 W tryptophan          1.2         11           1
 Y tyrosine            2.3         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC54823 
C1orf26               1.000   hypothetical protein LOC54823 
SMG6                  0.019   Smg-6 homolog, nonsense mediated mRNA decay factor ...
FAM184A               0.013   hypothetical protein LOC79632 isoform 2 
FAM184A               0.013   hypothetical protein LOC79632 isoform 1 
ANKRD12               0.012   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.012   ankyrin repeat domain 12 isoform 1 
DSP                   0.011   desmoplakin isoform I 
LRRIQ1                0.010   leucine-rich repeats and IQ motif containing 1 isof...
LRRIQ1                0.010   leucine-rich repeats and IQ motif containing 1 isof...
CYLC1                 0.010   cylicin, basic protein of sperm head cytoskeleton 1...
ATRX                  0.009   transcriptional regulator ATRX isoform 2 
ATRX                  0.009   transcriptional regulator ATRX isoform 1 
RAD50                 0.008   RAD50 homolog isoform 2 
RAD50                 0.008   RAD50 homolog isoform 1 
TRDN                  0.008   triadin 
SFRS12                0.007   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.007   splicing factor, arginine/serine-rich 12 isoform b [...
SFRS18                0.007   splicing factor, arginine/serine-rich 130 
SFRS18                0.007   splicing factor, arginine/serine-rich 130 
C1orf62               0.007   hypothetical protein LOC254268 
PPIG                  0.006   peptidylprolyl isomerase G 
KIAA1984              0.006   hypothetical protein LOC84960 
SR140                 0.006   U2-associated SR140 protein 
HIST1H1A              0.006   histone cluster 1, H1a 
TXLNB                 0.006   taxilin beta 
NBN                   0.006   nibrin 
FAM133B               0.006   hypothetical protein LOC257415 isoform 2 
FAM133B               0.006   hypothetical protein LOC257415 isoform 1 
ANKRD26               0.006   ankyrin repeat domain 26 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press