Guide to the Human Genome
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Name: C1orf62 Sequence: fasta or formatted (836aa) NCBI GI: 91754185
Description:

hypothetical protein LOC254268

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         44           3
 C cysteine            2.2         18           1
 D aspartate           5.6         47           2
 E glutamate           8.3         69           3
 F phenylalanine       2.9         24           1
 G glycine             5.7         48           2
 H histidine           3.3         28           2
 I isoleucine          5.0         42           2
 K lysine              9.8         82           3
 L leucine             7.1         59           2
 M methionine          1.3         11           1
 N asparagine          4.5         38           1
 P proline             6.3         53           1
 Q glutamine           6.8         57           3
 R arginine            3.0         25           2
 S serine             10.9         91           5
 T threonine           6.6         55           3
 V valine              2.9         24           1
 W tryptophan          0.4          3           1
 Y tyrosine            2.2         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC254268 
AKNA                  0.017   AT-hook transcription factor 
HOOK3                 0.016   golgi-associated microtubule-binding protein HOOK3 [...
NASP                  0.015   nuclear autoantigenic sperm protein isoform 2 
NASP                  0.015   nuclear autoantigenic sperm protein isoform 1 
CENPF                 0.013   centromere protein F 
LOC100133758          0.013   PREDICTED: hypothetical protein, partial 
EEA1                  0.013   early endosome antigen 1, 162kD 
CEP250                0.012   centrosomal protein 2 
DMD                   0.011   dystrophin Dp427c isoform 
DMD                   0.011   dystrophin Dp260-2 isoform 
DMD                   0.011   dystrophin Dp260-1 isoform 
DMD                   0.011   dystrophin Dp427p2 isoform 
DMD                   0.011   dystrophin Dp427p1 isoform 
DMD                   0.011   dystrophin Dp427l isoform 
DMD                   0.011   dystrophin Dp427m isoform 
CTTNBP2NL             0.011   CTTNBP2 N-terminal like 
TMEM57                0.011   transmembrane protein 57 
CCDC73                0.011   sarcoma antigen NY-SAR-79 
BOD1L                 0.010   biorientation of chromosomes in cell division 1-like...
ENOX2                 0.010   ecto-NOX disulfide-thiol exchanger 2 isoform a [Homo...
ENOX2                 0.010   ecto-NOX disulfide-thiol exchanger 2 isoform b [Homo...
IVL                   0.010   involucrin 
GOLGA4                0.010   golgi autoantigen, golgin subfamily a, 4 
SCLT1                 0.010   sodium channel associated protein 1 
NUMA1                 0.010   nuclear mitotic apparatus protein 1 
C11orf63              0.010   hypothetical protein LOC79864 isoform 1 
TRIM25                0.009   tripartite motif-containing 25 
TPM2                  0.009   tropomyosin 2 (beta) isoform 3 
ROCK2                 0.009   Rho-associated, coiled-coil containing protein kinas...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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