Guide to the Human Genome
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Name: ASTL Sequence: fasta or formatted (431aa) NCBI GI: 157502169
Description:

astacin-like metalloendopeptidase

Referenced in:

Metalloproteases
Ovary, Uterus and Placenta

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         32           1
 C cysteine            1.6          7           1
 D aspartate           3.0         13           1
 E glutamate           5.3         23           2
 F phenylalanine       3.0         13           1
 G glycine            10.9         47           2
 H histidine           2.3         10           1
 I isoleucine          4.9         21           2
 K lysine              2.3         10           2
 L leucine             9.3         40           2
 M methionine          1.9          8           1
 N asparagine          1.9          8           1
 P proline             9.7         42           1
 Q glutamine           3.9         17           1
 R arginine            6.3         27           2
 S serine             12.8         55           2
 T threonine           3.9         17           1
 V valine              5.6         24           2
 W tryptophan          2.1          9           1
 Y tyrosine            1.9          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   astacin-like metalloendopeptidase 
MEP1B                 0.134   meprin A beta 
BMP1                  0.121   bone morphogenetic protein 1 isoform 1 precursor [Hom...
BMP1                  0.121   bone morphogenetic protein 1 isoform 2 precursor [Hom...
BMP1                  0.121   bone morphogenetic protein 1 isoform 3 precursor [Hom...
TLL2                  0.121   tolloid-like 2 
TLL1                  0.118   tolloid-like 1 
MEP1A                 0.113   meprin A alpha 
NFATC1                0.022   nuclear factor of activated T-cells, cytosolic compo...
NFATC1                0.022   nuclear factor of activated T-cells, cytosolic compo...
NFATC1                0.022   nuclear factor of activated T-cells, cytosolic compo...
NFATC1                0.022   nuclear factor of activated T-cells, cytosolic compo...
PLCH2                 0.021   phospholipase C, eta 2 
NACA                  0.020   nascent polypeptide-associated complex alpha subuni...
SYN1                  0.020   synapsin I isoform Ia 
SYN1                  0.020   synapsin I isoform Ib 
TMPRSS13              0.020   transmembrane protease, serine 13 
IRS2                  0.019   insulin receptor substrate 2 
C17orf96              0.019   hypothetical protein LOC100170841 
FAM71E2               0.019   hypothetical protein LOC284418 
UBE4B                 0.019   ubiquitination factor E4B isoform 1 
ZC3H4                 0.018   zinc finger CCCH-type containing 4 
CASKIN2               0.018   cask-interacting protein 2 isoform b 
CASKIN2               0.018   cask-interacting protein 2 isoform a 
SYNJ1                 0.016   synaptojanin 1 isoform a 
SYNJ1                 0.016   synaptojanin 1 isoform b 
RPTOR                 0.016   raptor isoform 1 
RPTOR                 0.016   raptor isoform 2 
LGALS3                0.016   galectin 3 
C9orf75               0.016   hypothetical protein LOC286262 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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