Guide to the Human Genome
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Name: NFATC1 Sequence: fasta or formatted (825aa) NCBI GI: 19923350
Description:

nuclear factor of activated T-cells, cytosolic component 1 isoform B

Referenced in:

T cells

Other entries for this name:
alt prot [930aa] nuclear factor of activated T-cells, cytosolic component 1 isoform C
alt prot [353aa] nuclear factor of activated T-cells, cytosolic component 1 isoform D
alt prot [812aa] nuclear factor of activated T-cells, cytosolic component 1 isoform E
alt prot [716aa] nuclear factor of activated T-cells, cytosolic component 1 isoform A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         62           3
 C cysteine            1.9         16           1
 D aspartate           3.9         32           2
 E glutamate           4.8         40           3
 F phenylalanine       2.3         19           2
 G glycine             6.9         57           2
 H histidine           3.8         31           2
 I isoleucine          2.8         23           2
 K lysine              3.8         31           2
 L leucine             8.5         70           2
 M methionine          1.1          9           1
 N asparagine          2.7         22           3
 P proline            13.2        109           4
 Q glutamine           4.1         34           2
 R arginine            5.0         41           1
 S serine             11.8         97           2
 T threonine           5.8         48           2
 V valine              5.9         49           2
 W tryptophan          0.7          6           1
 Y tyrosine            3.5         29           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear factor of activated T-cells, cytosolic compo... 
NFATC1                0.951   nuclear factor of activated T-cells, cytosolic compo...
NFATC1                0.951   nuclear factor of activated T-cells, cytosolic compo...
NFATC1                0.838   nuclear factor of activated T-cells, cytosolic compo...
NFATC1                0.417   nuclear factor of activated T-cells, cytosolic compo...
NFATC2                0.330   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC2                0.330   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC2                0.330   nuclear factor of activated T-cells, cytoplasmic, c...
NFATC3                0.318   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.318   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.318   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.318   nuclear factor of activated T-cells, cytoplasmic, cal...
NFATC4                0.239   nuclear factor of activated T-cells, cytoplasmic, c...
NFATC4                0.239   nuclear factor of activated T-cells, cytoplasmic, ca...
NFAT5                 0.115   nuclear factor of activated T-cells 5 isoform a [Hom...
NFAT5                 0.115   nuclear factor of activated T-cells 5 isoform c [Homo...
NFAT5                 0.115   nuclear factor of activated T-cells 5 isoform d [Ho...
NFAT5                 0.115   nuclear factor of activated T-cells 5 isoform b [Ho...
NFAT5                 0.115   nuclear factor of activated T-cells 5 isoform a [Hom...
RELA                  0.021   v-rel reticuloendotheliosis viral oncogene homolog ...
RELA                  0.021   v-rel reticuloendotheliosis viral oncogene homolog ...
FLJ22184              0.018   PREDICTED: hypothetical protein LOC80164 
FLJ22184              0.016   PREDICTED: hypothetical protein FLJ22184 
SF3A2                 0.015   splicing factor 3a, subunit 2 
C2orf16               0.013   hypothetical protein LOC84226 
SF3B4                 0.013   splicing factor 3b, subunit 4 
FMN1                  0.012   formin 1 
FLJ22184              0.012   PREDICTED: hypothetical protein FLJ22184 
LOC100133915          0.012   PREDICTED: hypothetical protein 
PTPN23                0.012   protein tyrosine phosphatase, non-receptor type 23 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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