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Search of human proteins with 156671215
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|156671215 epsin 2 isoform b [Homo sapiens]
(641 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|156671215 epsin 2 isoform b [Homo sapiens] 1279 0.0
gi|156671217 epsin 2 isoform a [Homo sapiens] 1073 0.0
gi|156671219 epsin 2 isoform c [Homo sapiens] 712 0.0
gi|194248095 epsin 1 isoform b [Homo sapiens] 460 e-129
gi|194272148 epsin 1 isoform a [Homo sapiens] 410 e-114
gi|41350201 epsin 1 isoform c [Homo sapiens] 409 e-114
gi|157388929 epsin 3 [Homo sapiens] 406 e-113
gi|31377575 ENTH domain containing 1 [Homo sapiens] 218 2e-56
gi|7661968 epsin 4 [Homo sapiens] 169 6e-42
gi|33946327 nucleoporin 214kDa [Homo sapiens] 56 1e-07
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 54 3e-07
gi|116284392 mucin 2 precursor [Homo sapiens] 54 6e-07
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 54 6e-07
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 52 1e-06
gi|206597507 HIV-1 Rev binding protein isoform 3 [Homo sapiens] 52 1e-06
gi|41281612 zinc finger protein 828 [Homo sapiens] 50 6e-06
gi|163965366 nascent polypeptide-associated complex alpha subuni... 50 6e-06
gi|206597505 HIV-1 Rev binding protein isoform 1 [Homo sapiens] 49 1e-05
gi|38570132 HIV-1 Rev binding protein isoform 2 [Homo sapiens] 49 1e-05
gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens] 49 2e-05
gi|221139926 NHS-like 1 [Homo sapiens] 48 3e-05
gi|39995080 hypothetical protein LOC79567 [Homo sapiens] 48 3e-05
gi|91984781 ArfGAP with FG repeats 2 [Homo sapiens] 48 3e-05
gi|7662228 synaptosomal-associated protein, 91kDa homolog [Homo ... 47 4e-05
gi|149773456 hypothetical protein LOC643314 [Homo sapiens] 47 4e-05
gi|38261962 activating transcription factor 7 interacting protei... 47 5e-05
gi|206597509 HIV-1 Rev binding protein isoform 4 [Homo sapiens] 45 2e-04
gi|154146199 sal-like 3 [Homo sapiens] 45 3e-04
gi|222418647 mucin 7, secreted precursor [Homo sapiens] 44 6e-04
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi... 44 6e-04
>gi|156671215 epsin 2 isoform b [Homo sapiens]
Length = 641
Score = 1279 bits (3309), Expect = 0.0
Identities = 641/641 (100%), Positives = 641/641 (100%)
Query: 1 MTTSSIRRQMKNIVNNYSEAEIKVREATSNDPWGPSSSLMTEIADLTYNVVAFSEIMSMV 60
MTTSSIRRQMKNIVNNYSEAEIKVREATSNDPWGPSSSLMTEIADLTYNVVAFSEIMSMV
Sbjct: 1 MTTSSIRRQMKNIVNNYSEAEIKVREATSNDPWGPSSSLMTEIADLTYNVVAFSEIMSMV 60
Query: 61 WKRLNDHGKNWRHVYKALTLLDYLIKTGSERVAQQCRENIFAIQTLKDFQYIDRDGKDQG 120
WKRLNDHGKNWRHVYKALTLLDYLIKTGSERVAQQCRENIFAIQTLKDFQYIDRDGKDQG
Sbjct: 61 WKRLNDHGKNWRHVYKALTLLDYLIKTGSERVAQQCRENIFAIQTLKDFQYIDRDGKDQG 120
Query: 121 INVREKSKQLVALLKDEERLKAERAQALKTKERMAQVATGMGSNQITFGRGSSQPNLSTS 180
INVREKSKQLVALLKDEERLKAERAQALKTKERMAQVATGMGSNQITFGRGSSQPNLSTS
Sbjct: 121 INVREKSKQLVALLKDEERLKAERAQALKTKERMAQVATGMGSNQITFGRGSSQPNLSTS 180
Query: 181 HSEQEYGKAGGSPASYHGSPEASLCPQHRTGAPLGQSEELQPLSQRHPFLPHLGLASRPN 240
HSEQEYGKAGGSPASYHGSPEASLCPQHRTGAPLGQSEELQPLSQRHPFLPHLGLASRPN
Sbjct: 181 HSEQEYGKAGGSPASYHGSPEASLCPQHRTGAPLGQSEELQPLSQRHPFLPHLGLASRPN 240
Query: 241 GDWSQPCLTCDRAARATSPRVSSELEQARPQTSGEEELQLQLALAMSREVAEQEERLRRG 300
GDWSQPCLTCDRAARATSPRVSSELEQARPQTSGEEELQLQLALAMSREVAEQEERLRRG
Sbjct: 241 GDWSQPCLTCDRAARATSPRVSSELEQARPQTSGEEELQLQLALAMSREVAEQEERLRRG 300
Query: 301 DDLRLQMALEESRRDTVKIPKKKEHGSLPQQTTLLDLMDALPSSGPAAQKAEPWGPSAST 360
DDLRLQMALEESRRDTVKIPKKKEHGSLPQQTTLLDLMDALPSSGPAAQKAEPWGPSAST
Sbjct: 301 DDLRLQMALEESRRDTVKIPKKKEHGSLPQQTTLLDLMDALPSSGPAAQKAEPWGPSAST 360
Query: 361 NQTNPWGGPAAPASTSDPWPSFGTKPAASIDPWGVPTGATVQSVPKNSDPWAASQQPASS 420
NQTNPWGGPAAPASTSDPWPSFGTKPAASIDPWGVPTGATVQSVPKNSDPWAASQQPASS
Sbjct: 361 NQTNPWGGPAAPASTSDPWPSFGTKPAASIDPWGVPTGATVQSVPKNSDPWAASQQPASS 420
Query: 421 AGKRASDAWGAVSTTKPVSVSGSFELFSNLNGTIKDDFSEFDNLRTSKKTAESVTSLPSQ 480
AGKRASDAWGAVSTTKPVSVSGSFELFSNLNGTIKDDFSEFDNLRTSKKTAESVTSLPSQ
Sbjct: 421 AGKRASDAWGAVSTTKPVSVSGSFELFSNLNGTIKDDFSEFDNLRTSKKTAESVTSLPSQ 480
Query: 481 NNGTTSPDPFESQPLTVASSKPSSARKTPESFLGPNAALVNLDSLVTRPAPPAQSLNPFL 540
NNGTTSPDPFESQPLTVASSKPSSARKTPESFLGPNAALVNLDSLVTRPAPPAQSLNPFL
Sbjct: 481 NNGTTSPDPFESQPLTVASSKPSSARKTPESFLGPNAALVNLDSLVTRPAPPAQSLNPFL 540
Query: 541 APGAPATSAPVNPFQVNQPQPLTLNQLRGSPVLGTSTSFGPGPGVESMAVASMTSAAPQP 600
APGAPATSAPVNPFQVNQPQPLTLNQLRGSPVLGTSTSFGPGPGVESMAVASMTSAAPQP
Sbjct: 541 APGAPATSAPVNPFQVNQPQPLTLNQLRGSPVLGTSTSFGPGPGVESMAVASMTSAAPQP 600
Query: 601 ALGATGSSLTPLGPAMMNMVGSVGIPPSAAQATGTTNPFLL 641
ALGATGSSLTPLGPAMMNMVGSVGIPPSAAQATGTTNPFLL
Sbjct: 601 ALGATGSSLTPLGPAMMNMVGSVGIPPSAAQATGTTNPFLL 641
>gi|156671217 epsin 2 isoform a [Homo sapiens]
Length = 584
Score = 1073 bits (2775), Expect = 0.0
Identities = 563/641 (87%), Positives = 568/641 (88%), Gaps = 57/641 (8%)
Query: 1 MTTSSIRRQMKNIVNNYSEAEIKVREATSNDPWGPSSSLMTEIADLTYNVVAFSEIMSMV 60
MTTSSIRRQMKNIVNNYSEAEIKVREATSNDPWGPSSSLMTEIADLTYNVVAFSEIMSMV
Sbjct: 1 MTTSSIRRQMKNIVNNYSEAEIKVREATSNDPWGPSSSLMTEIADLTYNVVAFSEIMSMV 60
Query: 61 WKRLNDHGKNWRHVYKALTLLDYLIKTGSERVAQQCRENIFAIQTLKDFQYIDRDGKDQG 120
WKRLNDHGKNWRHVYKALTLLDYLIKTGSERVAQQCRENIFAIQTLKDFQYIDRDGKDQG
Sbjct: 61 WKRLNDHGKNWRHVYKALTLLDYLIKTGSERVAQQCRENIFAIQTLKDFQYIDRDGKDQG 120
Query: 121 INVREKSKQLVALLKDEERLKAERAQALKTKERMAQVATGMGSNQITFGRGSSQPNLSTS 180
INVREKSKQLVALLKDEERLKAERAQALKTKERMAQVATGMGSNQITFGR
Sbjct: 121 INVREKSKQLVALLKDEERLKAERAQALKTKERMAQVATGMGSNQITFGR---------- 170
Query: 181 HSEQEYGKAGGSPASYHGSPEASLCPQHRTGAPLGQSEELQPLSQRHPFLPHLGLASRPN 240
GS + +L H SE+ + P H
Sbjct: 171 -----------------GSSQPNLSTSH--------SEQEYGKAGGSPASYH-------- 197
Query: 241 GDWSQPCLTCDRAARATSPRVSSELEQARPQTSGEEELQLQLALAMSREVAEQEERLRRG 300
+TSPRVSSELEQARPQTSGEEELQLQLALAMSREVAEQEERLRRG
Sbjct: 198 --------------GSTSPRVSSELEQARPQTSGEEELQLQLALAMSREVAEQEERLRRG 243
Query: 301 DDLRLQMALEESRRDTVKIPKKKEHGSLPQQTTLLDLMDALPSSGPAAQKAEPWGPSAST 360
DDLRLQMALEESRRDTVKIPKKKEHGSLPQQTTLLDLMDALPSSGPAAQKAEPWGPSAST
Sbjct: 244 DDLRLQMALEESRRDTVKIPKKKEHGSLPQQTTLLDLMDALPSSGPAAQKAEPWGPSAST 303
Query: 361 NQTNPWGGPAAPASTSDPWPSFGTKPAASIDPWGVPTGATVQSVPKNSDPWAASQQPASS 420
NQTNPWGGPAAPASTSDPWPSFGTKPAASIDPWGVPTGATVQSVPKNSDPWAASQQPASS
Sbjct: 304 NQTNPWGGPAAPASTSDPWPSFGTKPAASIDPWGVPTGATVQSVPKNSDPWAASQQPASS 363
Query: 421 AGKRASDAWGAVSTTKPVSVSGSFELFSNLNGTIKDDFSEFDNLRTSKKTAESVTSLPSQ 480
AGKRASDAWGAVSTTKPVSVSGSFELFSNLNGTIKDDFSEFDNLRTSKKTAESVTSLPSQ
Sbjct: 364 AGKRASDAWGAVSTTKPVSVSGSFELFSNLNGTIKDDFSEFDNLRTSKKTAESVTSLPSQ 423
Query: 481 NNGTTSPDPFESQPLTVASSKPSSARKTPESFLGPNAALVNLDSLVTRPAPPAQSLNPFL 540
NNGTTSPDPFESQPLTVASSKPSSARKTPESFLGPNAALVNLDSLVTRPAPPAQSLNPFL
Sbjct: 424 NNGTTSPDPFESQPLTVASSKPSSARKTPESFLGPNAALVNLDSLVTRPAPPAQSLNPFL 483
Query: 541 APGAPATSAPVNPFQVNQPQPLTLNQLRGSPVLGTSTSFGPGPGVESMAVASMTSAAPQP 600
APGAPATSAPVNPFQVNQPQPLTLNQLRGSPVLGTSTSFGPGPGVESMAVASMTSAAPQP
Sbjct: 484 APGAPATSAPVNPFQVNQPQPLTLNQLRGSPVLGTSTSFGPGPGVESMAVASMTSAAPQP 543
Query: 601 ALGATGSSLTPLGPAMMNMVGSVGIPPSAAQATGTTNPFLL 641
ALGATGSSLTPLGPAMMNMVGSVGIPPSAAQATGTTNPFLL
Sbjct: 544 ALGATGSSLTPLGPAMMNMVGSVGIPPSAAQATGTTNPFLL 584
>gi|156671219 epsin 2 isoform c [Homo sapiens]
Length = 356
Score = 712 bits (1837), Expect = 0.0
Identities = 356/356 (100%), Positives = 356/356 (100%)
Query: 286 MSREVAEQEERLRRGDDLRLQMALEESRRDTVKIPKKKEHGSLPQQTTLLDLMDALPSSG 345
MSREVAEQEERLRRGDDLRLQMALEESRRDTVKIPKKKEHGSLPQQTTLLDLMDALPSSG
Sbjct: 1 MSREVAEQEERLRRGDDLRLQMALEESRRDTVKIPKKKEHGSLPQQTTLLDLMDALPSSG 60
Query: 346 PAAQKAEPWGPSASTNQTNPWGGPAAPASTSDPWPSFGTKPAASIDPWGVPTGATVQSVP 405
PAAQKAEPWGPSASTNQTNPWGGPAAPASTSDPWPSFGTKPAASIDPWGVPTGATVQSVP
Sbjct: 61 PAAQKAEPWGPSASTNQTNPWGGPAAPASTSDPWPSFGTKPAASIDPWGVPTGATVQSVP 120
Query: 406 KNSDPWAASQQPASSAGKRASDAWGAVSTTKPVSVSGSFELFSNLNGTIKDDFSEFDNLR 465
KNSDPWAASQQPASSAGKRASDAWGAVSTTKPVSVSGSFELFSNLNGTIKDDFSEFDNLR
Sbjct: 121 KNSDPWAASQQPASSAGKRASDAWGAVSTTKPVSVSGSFELFSNLNGTIKDDFSEFDNLR 180
Query: 466 TSKKTAESVTSLPSQNNGTTSPDPFESQPLTVASSKPSSARKTPESFLGPNAALVNLDSL 525
TSKKTAESVTSLPSQNNGTTSPDPFESQPLTVASSKPSSARKTPESFLGPNAALVNLDSL
Sbjct: 181 TSKKTAESVTSLPSQNNGTTSPDPFESQPLTVASSKPSSARKTPESFLGPNAALVNLDSL 240
Query: 526 VTRPAPPAQSLNPFLAPGAPATSAPVNPFQVNQPQPLTLNQLRGSPVLGTSTSFGPGPGV 585
VTRPAPPAQSLNPFLAPGAPATSAPVNPFQVNQPQPLTLNQLRGSPVLGTSTSFGPGPGV
Sbjct: 241 VTRPAPPAQSLNPFLAPGAPATSAPVNPFQVNQPQPLTLNQLRGSPVLGTSTSFGPGPGV 300
Query: 586 ESMAVASMTSAAPQPALGATGSSLTPLGPAMMNMVGSVGIPPSAAQATGTTNPFLL 641
ESMAVASMTSAAPQPALGATGSSLTPLGPAMMNMVGSVGIPPSAAQATGTTNPFLL
Sbjct: 301 ESMAVASMTSAAPQPALGATGSSLTPLGPAMMNMVGSVGIPPSAAQATGTTNPFLL 356
>gi|194248095 epsin 1 isoform b [Homo sapiens]
Length = 576
Score = 460 bits (1183), Expect = e-129
Identities = 303/693 (43%), Positives = 373/693 (53%), Gaps = 169/693 (24%)
Query: 1 MTTSSIRRQMKNIVNNYSEAEIKVREATSNDPWGPSSSLMTEIADLTYNVVAFSEIMSMV 60
M+TSS+RRQMKNIV+NYSEAEIKVREATSNDPWGPSSSLM+EIADLTYNVVAFSEIMSM+
Sbjct: 1 MSTSSLRRQMKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMI 60
Query: 61 WKRLNDHGKNWRHVYKALTLLDYLIKTGSERVAQQCRENIFAIQTLKDFQYIDRDGKDQG 120
WKRLNDHGKNWRHVYKA+TL++YLIKTGSERV+QQC+EN++A+QTLKDFQY+DRDGKDQG
Sbjct: 61 WKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQG 120
Query: 121 INVREKSKQLVALLKDEERLKAERAQALKTKERMAQVATGMGSNQITFGRGSSQPNLSTS 180
+NVREK+KQLVALL+DE+RL+ ERA ALKTKE++AQ AT + GS P
Sbjct: 121 VNVREKAKQLVALLRDEDRLREERAHALKTKEKLAQTATASSA-----AVGSGPP----P 171
Query: 181 HSEQEYGKAGGSPASYHGSPEASLCPQHRTGAPLGQSEELQPLSQRHPFLPHLGLASRPN 240
+EQ + ++ G EELQ L LA
Sbjct: 172 EAEQAWPQSSG-------------------------EEELQ---------LQLALA---- 193
Query: 241 GDWSQPCLTCDRAARATSPRVSSELEQARPQTSGEEELQLQLALAMSREVAEQEERLRRG 300
+S E P E++ QLQLAL++SRE ++EER+RRG
Sbjct: 194 --------------------MSKEEADQPPSCGPEDDAQLQLALSLSREEHDKEERIRRG 233
Query: 301 DDLRLQMALEESRRDTVKIPKKKEHGSLPQQTTLLDLMDALPSSGP-------------A 347
DDLRLQMA+EES+R+T KE SL + P++ P A
Sbjct: 234 DDLRLQMAIEESKRET----GGKEESSLMDLADVFTAPAPAPTTDPWGGPAPMAAAVPTA 289
Query: 348 AQKAEPWGPSASTNQTNPWGGPAAPASTSDPWPSFGTKPAA----SIDPWGVPTGATVQS 403
A ++PWG +PWGGPA ++ DPW +PAA S+DPWG T A
Sbjct: 290 APTSDPWGGPPVPPAADPWGGPAPTPASGDPW-----RPAAPAGPSVDPWG-GTPAPAAG 343
Query: 404 VPKNSDPWAASQQPASSAGKRASDAW-------------GAVSTTKPVSVSGSFELFSNL 450
DPW +S +G ASD W A +T + +G F+
Sbjct: 344 EGPTPDPWGSSDGGVPVSGPSASDPWTPAPAFSDPWGGSPAKPSTNGTTAAGGFD----- 398
Query: 451 NGTIKDDFSEFDNLRTSKKTAES--------VTSLPSQNNGTTSPDPFESQPLTVASSKP 502
T D+FS+FD LRT+ T+ S +P+++ G S P
Sbjct: 399 --TEPDEFSDFDRLRTALPTSGSSAGELELLAGEVPARSPGAFDMSGVRGSLAEAVGSPP 456
Query: 503 SSA--------RKTPESFLGPNAALVNLDSLVTRPAPP---AQSLNPFLAPGAPATSAPV 551
+A RKTPESFLGPNAALV+LDSLV+RP P A++ NPFL G PAT V
Sbjct: 457 PAATPTPTPPTRKTPESFLGPNAALVDLDSLVSRPGPTPPGAKASNPFLPGGGPATGPSV 516
Query: 552 -NPFQVNQPQPLTLNQLRGSPVLGTSTSFGPGPGVESMAVASMTSAAPQPALGATGSSLT 610
NPFQ P LTLNQLR SPV P GA + ++
Sbjct: 517 TNPFQPAPPATLTLNQLRLSPV--------------------------PPVPGAPPTYIS 550
Query: 611 PLGPAMMNMVGSVGIPP--SAAQATGTTNPFLL 641
PLG G G+PP TNPFLL
Sbjct: 551 PLG-------GGPGLPPMMPPGPPAPNTNPFLL 576
>gi|194272148 epsin 1 isoform a [Homo sapiens]
Length = 662
Score = 410 bits (1053), Expect = e-114
Identities = 281/681 (41%), Positives = 350/681 (51%), Gaps = 170/681 (24%)
Query: 1 MTTSSIRRQMKNIVNNYSEAEIKVREATSNDPWGPSSSLMTEIADLTYNVVAFSEIMSMV 60
M+TSS+RRQMKNIV+NYSEAEIKVREATSNDPWGPSSSLM+EIADLTYNVVAFSEIMSM+
Sbjct: 112 MSTSSLRRQMKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMI 171
Query: 61 WKRLNDHGKNWRHVYKALTLLDYLIKTGSERVAQQCRENIFAIQTLKDFQYIDRDGKDQG 120
WKRLNDHGKNWRHVYKA+TL++YLIKTGSERV+QQC+EN++A+QTLKDFQY+DRDGKDQG
Sbjct: 172 WKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQG 231
Query: 121 INVREKSKQLVALLKDEERLKAERAQALKTKERMAQVATGMGSNQITFGRGSSQPNLSTS 180
+NVREK+KQLVALL+DE+RL+ ERA ALKTKE++AQ AT + GS P
Sbjct: 232 VNVREKAKQLVALLRDEDRLREERAHALKTKEKLAQTATASSA-----AVGSGPP----P 282
Query: 181 HSEQEYGKAGGSPASYHGSPEASLCPQHRTGAPLGQSEELQPLSQRHPFLPHLGLA-SRP 239
+EQ + ++ G EELQ L LA S+
Sbjct: 283 EAEQAWPQSSG-------------------------EEELQ---------LQLALAMSKE 308
Query: 240 NGDWSQPCLTCDRAARATSPRVSSELEQARPQTSGEEELQLQLALAMSREVAEQEERLRR 299
D +R R R+ +E+++ +T G+EE L
Sbjct: 309 EADQE------ERIRRGDDLRLQMAIEESKRETGGKEESSL------------------- 343
Query: 300 GDDLRLQMALEESRRDTVKIPKKKEHGSLPQQTTLLDLMDALPSSGPAAQKAEPWGPSAS 359
M L + P G A+P++ P ++PWG
Sbjct: 344 -------MDLADVFTAPAPAPTTDPWGGPAPMAA------AVPTAAPT---SDPWGGPPV 387
Query: 360 TNQTNPWGGPAAPASTSDPWPSFGTKPAA----SIDPWGVPTGATVQSVPKNSDPWAASQ 415
+PWGGPA ++ DPW +PAA S+DPWG T A DPW +S
Sbjct: 388 PPAADPWGGPAPTPASGDPW-----RPAAPAGPSVDPWG-GTPAPAAGEGPTPDPWGSSD 441
Query: 416 QPASSAGKRASDAW-------------GAVSTTKPVSVSGSFELFSNLNGTIKDDFSEFD 462
+G ASD W A +T + +G F+ T D+FS+FD
Sbjct: 442 GGVPVSGPSASDPWTPAPAFSDPWGGSPAKPSTNGTTAAGGFD-------TEPDEFSDFD 494
Query: 463 NLRTSKKTAES--------VTSLPSQNNGTTSPDPFESQPLTVASSKPSSA--------R 506
LRT+ T+ S +P+++ G S P +A R
Sbjct: 495 RLRTALPTSGSSAGELELLAGEVPARSPGAFDMSGVRGSLAEAVGSPPPAATPTPTPPTR 554
Query: 507 KTPESFLGPNAALVNLDSLVTRPAPP---AQSLNPFLAPGAPATSAPV-NPFQVNQPQPL 562
KTPESFLGPNAALV+LDSLV+RP P A++ NPFL G PAT V NPFQ P L
Sbjct: 555 KTPESFLGPNAALVDLDSLVSRPGPTPPGAKASNPFLPGGGPATGPSVTNPFQPAPPATL 614
Query: 563 TLNQLRGSPVLGTSTSFGPGPGVESMAVASMTSAAPQPALGATGSSLTPLGPAMMNMVGS 622
TLNQLR SPV P GA + ++PLG G
Sbjct: 615 TLNQLRLSPV--------------------------PPVPGAPPTYISPLG-------GG 641
Query: 623 VGIPP--SAAQATGTTNPFLL 641
G+PP TNPFLL
Sbjct: 642 PGLPPMMPPGPPAPNTNPFLL 662
>gi|41350201 epsin 1 isoform c [Homo sapiens]
Length = 550
Score = 409 bits (1050), Expect = e-114
Identities = 282/680 (41%), Positives = 350/680 (51%), Gaps = 169/680 (24%)
Query: 1 MTTSSIRRQMKNIVNNYSEAEIKVREATSNDPWGPSSSLMTEIADLTYNVVAFSEIMSMV 60
M+TSS+RRQMKNIV+NYSEAEIKVREATSNDPWGPSSSLM+EIADLTYNVVAFSEIMSM+
Sbjct: 1 MSTSSLRRQMKNIVHNYSEAEIKVREATSNDPWGPSSSLMSEIADLTYNVVAFSEIMSMI 60
Query: 61 WKRLNDHGKNWRHVYKALTLLDYLIKTGSERVAQQCRENIFAIQTLKDFQYIDRDGKDQG 120
WKRLNDHGKNWRHVYKA+TL++YLIKTGSERV+QQC+EN++A+QTLKDFQY+DRDGKDQG
Sbjct: 61 WKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKENMYAVQTLKDFQYVDRDGKDQG 120
Query: 121 INVREKSKQLVALLKDEERLKAERAQALKTKERMAQVATGMGSNQITFGRGSSQPNLSTS 180
+NVREK+KQLVALL+DE+RL+ ERA ALKTKE++AQ AT + GS P
Sbjct: 121 VNVREKAKQLVALLRDEDRLREERAHALKTKEKLAQTATASSA-----AVGSGPP----P 171
Query: 181 HSEQEYGKAGGSPASYHGSPEASLCPQHRTGAPLGQSEELQPLSQRHPFLPHLGLA-SRP 239
+EQ + ++ G EELQ L LA S+
Sbjct: 172 EAEQAWPQSSG-------------------------EEELQ---------LQLALAMSKE 197
Query: 240 NGDWSQPCLTCDRAARATSPRVSSELEQARPQTSGEEELQLQLALAMSREVAEQEERLRR 299
D +R R R+ +E+++ +T G+EE L
Sbjct: 198 EADQE------ERIRRGDDLRLQMAIEESKRETGGKEESSL------------------- 232
Query: 300 GDDLRLQMALEESRRDTVKIPKKKEHGSLPQQTTLLDLMDALPSSGPAAQKAEPWGPSAS 359
M L + P G A+P++ P ++PWG
Sbjct: 233 -------MDLADVFTAPAPAPTTDPWGGPAPMAA------AVPTAAPT---SDPWGGPPV 276
Query: 360 TNQTNPWGGPAAPASTSDPWPSFGTKPAA----SIDPWGVPTGATVQSVPKNSDPWAASQ 415
+PWGGPA ++ DPW +PAA S+DPWG T A DPW +S
Sbjct: 277 PPAADPWGGPAPTPASGDPW-----RPAAPAGPSVDPWG-GTPAPAAGEGPTPDPWGSSD 330
Query: 416 QPASSAGKRASDAWGAV---------STTKPV---SVSGSFELFSNLNGTIKDDFSEFDN 463
+G ASD W S KP + +G F+ T D+FS+FD
Sbjct: 331 GGVPVSGPSASDPWTPAPAFSDPWGGSPAKPSTNGTTAGGFD-------TEPDEFSDFDR 383
Query: 464 LRTSKKTAES--------VTSLPSQNNGTTSPDPFESQPLTVASSKPSSA--------RK 507
LRT+ T+ S +P+++ G S P +A RK
Sbjct: 384 LRTALPTSGSSAGELELLAGEVPARSPGAFDMSGVRGSLAEAVGSPPPAATPTPTPPTRK 443
Query: 508 TPESFLGPNAALVNLDSLVTRPAPP---AQSLNPFLAPGAPATSAPV-NPFQVNQPQPLT 563
TPESFLGPNAALV+LDSLV+RP P A++ NPFL G PAT V NPFQ P LT
Sbjct: 444 TPESFLGPNAALVDLDSLVSRPGPTPPGAKASNPFLPGGGPATGPSVTNPFQPAPPATLT 503
Query: 564 LNQLRGSPVLGTSTSFGPGPGVESMAVASMTSAAPQPALGATGSSLTPLGPAMMNMVGSV 623
LNQLR SPV P GA + ++PLG G
Sbjct: 504 LNQLRLSPV--------------------------PPVPGAPPTYISPLG-------GGP 530
Query: 624 GIPP--SAAQATGTTNPFLL 641
G+PP TNPFLL
Sbjct: 531 GLPPMMPPGPPAPNTNPFLL 550
>gi|157388929 epsin 3 [Homo sapiens]
Length = 632
Score = 406 bits (1044), Expect = e-113
Identities = 295/715 (41%), Positives = 375/715 (52%), Gaps = 158/715 (22%)
Query: 1 MTTSSIRRQMKNIVNNYSEAEIKVREATSNDPWGPSSSLMTEIADLTYNVVAFSEIMSMV 60
MTTS++RRQ+KNIV+NYSEAEIKVREATSNDPWGP SSLM+EIADLT+N VAF+E+M M+
Sbjct: 1 MTTSALRRQVKNIVHNYSEAEIKVREATSNDPWGPPSSLMSEIADLTFNTVAFTEVMGML 60
Query: 61 WKRLNDHGKNWRHVYKALTLLDYLIKTGSERVAQQCRENIFAIQTLKDFQYIDRDGKDQG 120
W+RLND GKNWRHVYKALTLLDYL+KTGSERVA QCREN++ IQTLKDFQYIDRDGKDQG
Sbjct: 61 WRRLNDSGKNWRHVYKALTLLDYLLKTGSERVAHQCRENLYTIQTLKDFQYIDRDGKDQG 120
Query: 121 INVREKSKQLVALLKDEERLKAERAQALKTKERMAQVATGMGSNQITFGRGSSQPNLSTS 180
+NVREK KQ++ALLKDEERL+ ER ALKTKERMA G+GS Q+ F R
Sbjct: 121 VNVREKVKQVMALLKDEERLRQERTHALKTKERMALEGIGIGSGQLGFSR---------- 170
Query: 181 HSEQEYGKAGGSPASYHGSPEASLCPQHRTGAPLGQSEELQPLSQRHPFLPHLGLASRPN 240
++Y ++ GSP+SY+ S
Sbjct: 171 RYGEDYSRSRGSPSSYNSSS---------------------------------------- 190
Query: 241 GDWSQPCLTCDRAARATSPRVSSELEQARPQTSGEEELQLQLALAMSREVAEQ--EERLR 298
S P T D LEQARPQTSGEEELQLQLALAMSRE AE+
Sbjct: 191 ---SSPRYTSD-------------LEQARPQTSGEEELQLQLALAMSREEAEKPVPPASH 234
Query: 299 RGDDLRLQMALEESR------------------------------RDTVKIPKKKEHGSL 328
R +DL+LQ+AL SR R+ + +K+E
Sbjct: 235 RDEDLQLQLALRLSRQEHEKEVRSWQGDGSPMANGAGAVVHHQRDREPEREERKEEEKLK 294
Query: 329 PQQTTLLDLMDA-LPSSGPAAQ--KAEPW-------GPSASTNQTNPWGGPAAP------ 372
Q+++LDL D +P+ P + A+PW AS + P P +P
Sbjct: 295 TSQSSILDLADIFVPALAPPSTHCSADPWDIPGFRPNTEASGSSWGPSADPWSPIPSGTV 354
Query: 373 ASTSDPWPSFGTKPAASIDPWG----VPTGATVQSVPKNSDPWAASQQPASSAGKRASDA 428
S S PW T +S +PWG +P G P +DPWA + P +D
Sbjct: 355 LSRSQPWDL--TPMLSSSEPWGRTPVLPAG------PPTTDPWALN-SPHHKLPSTGADP 405
Query: 429 WGA-VSTTKPVSVSGSFELFSNLNGTIKDDFSEFDNLRTSKKTAESVTSL------PSQN 481
WGA + T+ + +F+ F+ + + L + K ++ L S+
Sbjct: 406 WGASLETSDTPGGASTFDPFAKPPESTETKEGLEQALPSGKPSSPVELDLFGDPSPSSKQ 465
Query: 482 NGTTSPDPFESQPLTVASSKPSS---ARKTPESFLGPNA-ALVNLDSLVTRPAPPAQSLN 537
NGT PD + L A ++PS A +TPESFLGP+A +LVNLDSLV P A++ N
Sbjct: 466 NGTKEPDALDLGILGEALTQPSKEARACRTPESFLGPSASSLVNLDSLVKAP-QVAKTRN 524
Query: 538 PFLAPGAPATSAPVNPFQVNQPQPLTLNQLR-GSPVLGTSTSFGPGPGVESMAVASMTSA 596
PFL G A S P NPF +P TLNQ+R GSP LG GP + + +++
Sbjct: 525 PFLT-GLSAPS-PTNPFGAGEPGRPTLNQMRTGSPALG----LAGGPVGAPLGSMTYSAS 578
Query: 597 APQPALGATGSSLTPLGPAMMNMVGSVG----IP-PSAA------QATGTTNPFL 640
P P P ++ G+ +P PS+A TG TNPFL
Sbjct: 579 LPLPLSSVPAGLTLPASVSVFPQAGAFAPQPLLPTPSSAGPRPPPPQTG-TNPFL 632
>gi|31377575 ENTH domain containing 1 [Homo sapiens]
Length = 607
Score = 218 bits (554), Expect = 2e-56
Identities = 108/191 (56%), Positives = 137/191 (71%), Gaps = 5/191 (2%)
Query: 5 SIRRQMKNIVNNYSEAEIKVREATSNDPWGPSSSLMTEIADLTYNVVAFSEIMSMVWKRL 64
+ RRQ+KN V NYS+AEIKVREATSNDPWGPSSSLM +I+DLT+N ++ SEIM+M+W RL
Sbjct: 2 AFRRQVKNFVKNYSDAEIKVREATSNDPWGPSSSLMLDISDLTFNTISLSEIMNMLWHRL 61
Query: 65 NDHGKNWRHVYKALTLLDYLIKTGSERVAQQCRENIFAIQTLKDFQYIDRDGKDQGINVR 124
NDHGKNWRHVYK+LTL+DYLIK GS++V Q CRE +QTLKDFQ+ID GKDQG +R
Sbjct: 62 NDHGKNWRHVYKSLTLMDYLIKNGSKKVIQHCREGFCNLQTLKDFQHIDEAGKDQGYYIR 121
Query: 125 EKSKQLVALLKDEERLKAERAQALKTKERMAQVATGM-----GSNQITFGRGSSQPNLST 179
EKSKQ++ LL DE L ER A +T++R + SN +T + P++S
Sbjct: 122 EKSKQVITLLMDEPLLCKEREVACRTRQRTSHSILFSKRQLGSSNSLTACTSAPTPDISA 181
Query: 180 SHSEQEYGKAG 190
S + + K G
Sbjct: 182 SEKKYKLPKFG 192
>gi|7661968 epsin 4 [Homo sapiens]
Length = 625
Score = 169 bits (429), Expect = 6e-42
Identities = 178/653 (27%), Positives = 282/653 (43%), Gaps = 102/653 (15%)
Query: 12 NIVNNYSEAEIKVREATSNDPWGPSSSLMTEIADLTYNVVAFSEIMSMVWKR-LNDHGKN 70
N+V NYSE E KVREAT++DPWGPS LM EIA T+ F E+M+M+W R L D+ KN
Sbjct: 16 NVVMNYSEIESKVREATNDDPWGPSGQLMGEIAKATFMYEQFPELMNMLWSRMLKDNKKN 75
Query: 71 WRHVYKALTLLDYLIKTGSERVAQQCRENIFAIQTLKDFQYIDRDGKDQGINVREKSKQL 130
WR VYK+L LL YLI+ GSERV RE+I+ +++L+++ ++D GKDQGIN+R+K K+L
Sbjct: 76 WRRVYKSLLLLAYLIRNGSERVVTSAREHIYDLRSLENYHFVDEHGKDQGINIRQKVKEL 135
Query: 131 VALLKDEERLKAERAQALKTKERMAQVATGMGSNQITFGRGSSQPNLSTSHSEQEYGKAG 190
V +D++RL+ ER +A K K++ G+ S+ + G
Sbjct: 136 VEFAQDDDRLREERKKAKKNKDKY----VGVSSDSV-----------------------G 168
Query: 191 GSPASYHGSPEASLCPQHRTGAPLGQSEELQPLSQRHPFLPHLGLASRPNGDWSQPCLT- 249
G S PE P+ + EE PF LG S G ++
Sbjct: 169 GFRYSERYDPE----PKSK------WDEEWDKNKSAFPFSDKLGELSDKIGSTIDDTISK 218
Query: 250 CDRAARATSPRVSSELEQARPQTSG---------EEELQLQLALAMSREVAEQEERLRRG 300
R R SP S+ ++ + G EEE + +++ R +R
Sbjct: 219 FRRKDREDSPERCSDSDEEKKARRGRSPKGEFKDEEETVTTKHIHITQATETTTTRHKRT 278
Query: 301 DDLRLQMALEESRRDTVKIPKKKEHGSLPQQTTLLDLMDALPSSGPAAQKAEPW-GPSAS 359
+ + L + T ++ S T + ++PSS + + + G S S
Sbjct: 279 ANPSKTIDLGAAAHYTGDKASPDQNAS--THTPQSSVKTSVPSSKSSGDLVDLFDGTSQS 336
Query: 360 T-NQTNPWGGPA----APASTSDPWPSFGTKPAASIDPWGVPTGATVQSVPKNSDPWAAS 414
T + +GG A A AS S P T W A V + + + ++
Sbjct: 337 TGGSADLFGGFADFGSAAASGSFPSQVTATSGNGDFGDWSAFNQAPSGPVASSGEFFGSA 396
Query: 415 QQPASSAGKRASDAWGAVSTTKPVSVSGSFELFSNLNGTIKDDFSEFDNLRTSKKTAESV 474
QPA + A G P + S S +LF +L G+ + + ++ S + +V
Sbjct: 397 SQPAVELVSGSQSALG-----PPPAASNSSDLF-DLMGSSQATMTSSQSMNFSMMSTNTV 450
Query: 475 -TSLPSQNNGTTSPDPFESQPLTVASSKPSSARKTPESFLGPNAALVNLDSLV--TRPAP 531
LP + T + S ++ P ++ P+ ++LD+L+ +P+
Sbjct: 451 GLGLPMSRSQNTD------------MVQKSVSKTLPSTWSDPSVN-ISLDNLLPGMQPSK 497
Query: 532 PAQ-SLNPFLAPGAPATSAPVNPFQVNQPQPL-TLNQLRGSPVLGTSTSFGP-GPGVESM 588
P Q SLN + Q N QP+ + Q G+ L + ++ P P ++
Sbjct: 498 PQQPSLNTMIQ-------------QQNMQQPMNVMTQSFGAVNLSSPSNMLPVRPQTNAL 544
Query: 589 AVASMTSAAPQPALGATGSSLTPLG------PAMMNMVGSVGIPPSAAQATGT 635
M + P G G + PLG +MM M ++G+ + TGT
Sbjct: 545 IGGPMPMSMPNVMTGTMG--MAPLGNTPMMNQSMMGMNMNIGMSAAGMGLTGT 595
>gi|33946327 nucleoporin 214kDa [Homo sapiens]
Length = 2090
Score = 55.8 bits (133), Expect = 1e-07
Identities = 108/511 (21%), Positives = 175/511 (34%), Gaps = 79/511 (15%)
Query: 157 VATGMGSNQITFGRGSSQPNLSTSHSEQEYGKAGGSPASYHGSPEASLCPQHRTGAPLGQ 216
+ T S+ T +G++ P+ S + GGS SY PE+S
Sbjct: 1227 IITPTPSSNFTAAQGAT-PSTKESSQPDAFSSGGGSKPSYEAIPESS------------- 1272
Query: 217 SEELQPLSQRHPFLPHLGLASRPNGDWSQPCLTCDRAARATSPRVSSELEQARPQTSGEE 276
P G+ S N +P + R + +S+ + S
Sbjct: 1273 --------------PPSGITSASNTTPGEPAASSSRPVAPSGTALSTTSSKLETPPSKLG 1318
Query: 277 ELQLQLALAMSREVAEQEERLRRGDDLRLQMALEESRRDTVKIPKKKEHGSLPQQTTLLD 336
EL +LA E L LR+ A ++S + T K + P +T+ +
Sbjct: 1319 ELLFPSSLA--------GETLGSFSGLRVGQA-DDSTKPTNKASSTSLTSTQPTKTSGVP 1369
Query: 337 LMDALPSSGPAAQKAEPWGPSASTNQTNPWGGPAAPASTSDPWPSFGTKPAASIDPWGVP 396
+ + EP P S+ T PAA +++S FG+ P S GV
Sbjct: 1370 SGFNFTAPPVLGKHTEP--PVTSSATTTSVAPPAATSTSST--AVFGSLPVTSAGSSGVI 1425
Query: 397 T-GATVQSVPKNSDPWAASQQ----------------------PASSAGKRASDAWGAVS 433
+ G T S K S + + Q P S G S A +
Sbjct: 1426 SFGGTSLSAGKTSFSFGSQQTNSTVPPSAPPPTTAATPLPTSFPTLSFGSLLS---SATT 1482
Query: 434 TTKPVSVSGSFELFSNLNGTIKDDFSEFDNLRTS---KKTAESVTSLPSQNNGTTSPDPF 490
+ P+S S E ++ K SE S ++ + + P Q + + +P
Sbjct: 1483 PSLPMSAGRSTEEATSSALPEKPGDSEVSASAASLLEEQQSAQLPQAPPQTSDSVKKEPV 1542
Query: 491 ESQPLTVASSKPSSARKTPESFLGPNAALVNLDSLVTRPAPPAQSLNPFLAPGAPATSAP 550
+QP S +S+ A + T PPA S F PG A +A
Sbjct: 1543 LAQPAVSNSGTAASSTSLVALSAEATPATTGVPDARTEAVPPASS---FSVPGQTAVTAA 1599
Query: 551 VNPFQVNQPQPLTLNQLRGSPVLGTSTSF-GPGPGVESMAVASMTSAAPQPALGATGSSL 609
++ P+ + + +P+ ++TS PGP E+ A ++TS + A SS
Sbjct: 1600 A----ISSAGPVAV-ETSSTPIASSTTSIVAPGPSAEAAAFGTVTSGSSVFAQPPAASSS 1654
Query: 610 TPLGPAMMNMVGSVGIPPSAAQATGTTNPFL 640
+ N + P Q +T P L
Sbjct: 1655 SAFNQLTNNTATAPSATPVFGQVAASTAPSL 1685
Score = 35.4 bits (80), Expect = 0.16
Identities = 59/254 (23%), Positives = 90/254 (35%), Gaps = 56/254 (22%)
Query: 342 PSSGPAAQKAEPWGPSASTNQTNPWGGPAAPASTSDPWPSFGTKPAASIDPWGVPTGATV 401
P+S A QK + +A+ + P PAAP +T P+ G S + + ATV
Sbjct: 438 PTSSQAPQKLD--ASAAAAPASLPPSSPAAPIATFSLLPAGGAPTVFSFGSSSLKSSATV 495
Query: 402 QSVP----KNSDPWAASQQPASSA------GKRASDAWGAVSTTKPVSVSGSF------- 444
P SD A+ P S K + A S P + S SF
Sbjct: 496 TGEPPSYSSGSDSSKAAPGPGPSTFSFVPPSKASLAPTPAASPVAPSAASFSFGSSGFKP 555
Query: 445 ------------------ELFSNLNGTIKDDFSE-FDNLRTSKKTAESVT---------- 475
F +K + SE F TS + S +
Sbjct: 556 TLESTPVPSVSAPNIAMKPSFPPSTSAVKVNLSEKFTAAATSTPVSSSQSAPPMSPFSSA 615
Query: 476 SLPSQNNGTTSPDPFESQPLTV---ASSKPSSARKTPESFLGPNAALVNLDSLVTRPA-- 530
S P+ + + P P + P +V +S PS + ++ + P ++V +T PA
Sbjct: 616 SKPAASGPLSHPTPLSAPPSSVPLKSSVLPSPSGRSAQGSSSPVPSMVQKSPRITPPAAK 675
Query: 531 ---PPAQSLNPFLA 541
P A+SL P +A
Sbjct: 676 PGSPQAKSLQPAVA 689
Score = 31.2 bits (69), Expect = 3.1
Identities = 62/269 (23%), Positives = 99/269 (36%), Gaps = 46/269 (17%)
Query: 400 TVQSVPKNSDPWAASQQPASSAGKR---ASDAWGAVSTTKPVSVSGS-------FELFSN 449
T++S K+ A P A R A V +T P S+S S +E
Sbjct: 924 TIESHTKSLPKVPAKLSPMKQAQLRNFLAKRKTPPVRSTAPASLSRSAFLSQRYYEDLDE 983
Query: 450 LNGTIKDDFS-EFDNLRTSKKTAESVTSLPSQNNGTTSPD----------PFE------- 491
++ T S E ++ RTS K E+V P +P PF
Sbjct: 984 VSSTSSVSQSLESEDARTSCKDDEAVVQAPRHAPVVRTPSIQPSLLPHAAPFAKSHLVHG 1043
Query: 492 SQPLTVASSKPSSARKT-PESFLGPNAALVNLDSLVTRPAPP--------AQSLNPFLAP 542
S P + +S +SA K P+ A + P+ P A +L +A
Sbjct: 1044 SSPGVMGTSVATSASKIIPQGADSTMLATKTVKHGAPSPSHPISAPQAAAAAALRRQMAS 1103
Query: 543 GAPATSAPVNPFQVNQPQPLTLNQLRGSPVLGTSTSFGPGPGVESMAVASMTSAAPQPAL 602
APA + N PQ + + +L+ +P ST+ G +V T+ P P L
Sbjct: 1104 QAPAVNTLTESTLKNVPQVVNVQELKNNPAT-PSTAMG-------SSVPYSTAKTPHPVL 1155
Query: 603 GATGSSLTPLGPAMMNMVGSVGIPPSAAQ 631
++ G +++N + G P++ Q
Sbjct: 1156 TPVAANQAKQG-SLINSLKPSGPTPASGQ 1183
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 54.3 bits (129), Expect = 3e-07
Identities = 128/549 (23%), Positives = 188/549 (34%), Gaps = 76/549 (13%)
Query: 97 RENIFAIQTLKDFQYIDRDGKDQGINVREKSKQLVALLKDEERLK-AERAQALKTKERMA 155
R +I LK+F +D++ D E+ + E+LK ++ + E A
Sbjct: 303 RPSILKEDNLKEFDQLDQENDDGWAGAHEE-------VDYTEKLKFSDEEDGRDSDEEGA 355
Query: 156 QVATGMGSNQITFGRGSSQPNLSTSHSEQEYGKAGGSPASYHGSP-----EASLCPQHRT 210
+ G SQ + GK G SP S +P E S P+
Sbjct: 356 E------------GHRDSQSASGEERPPEADGKKGNSPNSEPPTPKTAWAETSRPPETEP 403
Query: 211 GAPLGQSEELQPLSQRHPFLPHLGLASRPNGDWSQPCLTCDRAARATSPRVSSELEQARP 270
G P L P PH G P G+W P DR P + ++A
Sbjct: 404 GPP-APKPPLPP--------PHRG----PAGNWGPPGDYPDRGGPPCKPPAPEDEDEAWR 450
Query: 271 QTSGEEELQLQLALAMSREVAEQEERLRRGDDLRLQMALEESRRDTVKIPKKKEHGSLPQ 330
Q + ++ LA+ +R E+EER R ++ R A + R D K + P
Sbjct: 451 QRRKQSSSEISLAVERARRRREEEER-RMQEERRAACAEKLKRLDEKFGAPDKRLKAEPA 509
Query: 331 QTTLLDLMDALPSSGPAAQKAEPWGP--SASTNQTNPWGGPAAPASTSDPWPSFGTKPAA 388
A P + P A P P SA T +T P AP + S P P G A
Sbjct: 510 APPAAPSTPAPPPAVPKELPAPPAPPPASAPTPETEPEEPAQAPPAQSTPTP--GVAAAP 567
Query: 389 SIDPWGVPTGATVQSVPKNSDPWAASQQPASSAGKRASDAWGAV--STTKPVSVSGSFEL 446
++ G T +T +S + AS K + V TT PV E
Sbjct: 568 TLVSGGGSTSST------SSGSFEASPVEPQLPSKEGPEPPEEVPPPTTPPVP---KVEP 618
Query: 447 FSNLNGTIKDDFSEFDNLRTSKKTAESVTSLPSQNNGTTSPDPFESQPLTVASSKPSSAR 506
+ G + S+ +K+ Q + Q S+ P+
Sbjct: 619 KGDGIGPTRQPPSQGLGYPKYQKSLPPRFQRQQQEQLLKQQQQHQWQQHQQGSAPPTPVP 678
Query: 507 KTPESFLGPNAALVNLDSLVTRPAPPAQSLNPFLAPGAPATSAPVN--PFQVNQPQPLTL 564
+P P + P PP ++L P A G P P+N P + P +
Sbjct: 679 PSP-----PQPVTLGAVPAPQAPPPPPKALYPG-ALGRPPPMPPMNFDPRWMMIPPYVDP 732
Query: 565 NQLRGSPVLGTSTSFGPGPGVESMAVASMTSAAPQPALGATGSSLTPL---GPAMMNMVG 621
L+G P L F P PGV + P+ + GSS P PAM+ G
Sbjct: 733 RLLQGRPPL----DFYP-PGVHP------SGLVPRERSDSGGSSSEPFDRHAPAMLRERG 781
Query: 622 SVGIPPSAA 630
+ + P A
Sbjct: 782 TPPVDPKLA 790
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 53.5 bits (127), Expect = 6e-07
Identities = 71/303 (23%), Positives = 107/303 (35%), Gaps = 44/303 (14%)
Query: 342 PSSGPAAQKAEPWGPSASTNQTNPWGGPAAPASTSDPWPSFGTKPAASIDPWGVPTGATV 401
P++ P+ P P AST P P+ P +T+ P T + P PT T
Sbjct: 1496 PTTTPSPPTTTPITPPASTTTLPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTT- 1554
Query: 402 QSVPKNSDPWAASQQPASSAGKRASDAWGAVSTTKPVSVSGSFELFSNLNGTIKDDFSEF 461
++P + P S P ++ + +TT P + + T +
Sbjct: 1555 -TLPPTTTP---SPPPTTTTTPPPTTTPSPPTTTTPSPPTIT---------TTTPPPTTT 1601
Query: 462 DNLRTSKKTAESVTSLPSQNNGT--TSPDPFESQPLTVASSKPSSARKTPESFLGPNAAL 519
+ T+ T T+ PS T T P + P T S P + TP P+
Sbjct: 1602 PSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPS--- 1658
Query: 520 VNLDSLVTRPAPPAQSLN---PFLAPGAPATSAPVNP-FQVNQPQPLTLNQLRGSPVLGT 575
T P+PP + P P +P T+ P P + P P T SP+ T
Sbjct: 1659 ---PPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTT---TPSSPITTT 1712
Query: 576 STSFGPGPGVESMAVASMTSAAPQPALGATGSSLTPLGPAMMNMVGSVGIPPSAAQATGT 635
+T +S T+ +P P T S T P M +PP+ + T
Sbjct: 1713 TTP------------SSTTTPSPPPTTMTTPSPTTTPSPPTTTM---TTLPPTTTSSPLT 1757
Query: 636 TNP 638
T P
Sbjct: 1758 TTP 1760
Score = 45.4 bits (106), Expect = 2e-04
Identities = 55/287 (19%), Positives = 94/287 (32%), Gaps = 22/287 (7%)
Query: 329 PQQTTLLDLMDALPSSGPAAQKAEPWGPSASTNQTNPWGGPAAPASTSDPWPSFGTKPAA 388
P T + P+ P + P +T P P T P + T
Sbjct: 4058 PTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTP---TPTPTGTQTPTTTPITT-TT 4113
Query: 389 SIDPWGVPTGATVQSVPKNSDPWAASQQPASSAGKRASDAWGAVSTTKPVSVSGSFELFS 448
++ P PTG + + + P + + TT P++ + +
Sbjct: 4114 TVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQ--------TPTTTPITTTTTVTPTP 4165
Query: 449 NLNGTIKDDFSEFDNLRTSKKTAESVTSLPSQNNGTTSPDPFESQ-PLT-VASSKPSSAR 506
GT T T +VT P+ T P S P+ + +S P
Sbjct: 4166 TPTGTQTPT-------TTPITTTTTVTPTPTPTGTQTGPPTHTSTAPIAELTTSNPPPES 4218
Query: 507 KTPESFLGPNAALVNLDSLVTRPAPPAQSLNPFLAPGAPATSAPVNPFQVNQPQPLTLNQ 566
TP++ ++ L +L++ PPA + P P + P P T
Sbjct: 4219 STPQTSRSTSSPLTESTTLLST-LPPAIEMTSTAPPSTPTAPTTTSGGHTLSPPPSTTTS 4277
Query: 567 LRGSPVLGTSTSFGPGPGVESMAVASMTSAAPQPALGATGSSLTPLG 613
G+P GT+T P ++ + ++ P P +T S + G
Sbjct: 4278 PPGTPTRGTTTGSSSAPTPSTVQTTTTSAWTPTPTPLSTPSIIRTTG 4324
Score = 45.1 bits (105), Expect = 2e-04
Identities = 41/175 (23%), Positives = 63/175 (36%), Gaps = 14/175 (8%)
Query: 466 TSKKTAESVTSLPSQNNGTTSPDPFE--SQPLTVASSKPSSARKTPESFLGPNAALVNLD 523
TS T T+ TT+P P S P+T ++ P P + P +
Sbjct: 1411 TSTTTLPPTTTPSPPTTTTTTPPPTTTPSPPITTTTTPP------PTTTPSPPISTTTTP 1464
Query: 524 SLVTRPAPPAQSLNPFLAPGAPATSAPVNPFQVNQPQPLTLNQLRGSPVLGTSTSFGPGP 583
T P+PP + +P +P T+ P P P T + +P T+T P
Sbjct: 1465 PPTTTPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPTTTPI--TPPASTTTL----P 1518
Query: 584 GVESMAVASMTSAAPQPALGATGSSLTPLGPAMMNMVGSVGIPPSAAQATGTTNP 638
+ + + T+ P P + + TP+ P PS T TT P
Sbjct: 1519 PTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPP 1573
Score = 38.5 bits (88), Expect = 0.019
Identities = 58/324 (17%), Positives = 99/324 (30%), Gaps = 27/324 (8%)
Query: 329 PQQTTLLDLMDALPSSGPAAQKAEPWGPSASTNQTNPWGGPAAPASTSDPWPSFGTKPAA 388
P T + P+ P + P +T P P T P + T
Sbjct: 3943 PTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTP---TPTPTGTQTPTTTPITT-TT 3998
Query: 389 SIDPWGVPTGATVQSVPKNSDPWAASQQPASSAGKRASDAWGAVSTTKPVSVSGSFELFS 448
++ P PTG + + + P + + TT P++ + +
Sbjct: 3999 TVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQ--------TPTTTPITTTTTVTPTP 4050
Query: 449 NLNGTIKDDFSEFDNLRTSKKT-----AESVTSLPSQNNGTTSPDPFESQPLT-----VA 498
GT + T T ++ T+ P T +P P + T +
Sbjct: 4051 TPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPIT 4110
Query: 499 SSKPSSARKTPESFLGPNAALVNLDSLVTRPAPPAQSLNPFLAPGAPATSAPVNPF---- 554
++ + TP P + + VT P + P P T+ P
Sbjct: 4111 TTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGT 4170
Query: 555 QVNQPQPLTLNQLRGSPVLGTSTSFGPGPGVESMAVASMTSAAPQPALGATGSSLTPLGP 614
Q P+T T T GP + +A +T++ P P +S + P
Sbjct: 4171 QTPTTTPITTTTTVTPTPTPTGTQTGPPTHTSTAPIAELTTSNPPPESSTPQTSRSTSSP 4230
Query: 615 AMMNMVGSVGIPPSAAQATGTTNP 638
+ +PP A + T T P
Sbjct: 4231 LTESTTLLSTLPP-AIEMTSTAPP 4253
Score = 35.0 bits (79), Expect = 0.21
Identities = 51/235 (21%), Positives = 82/235 (34%), Gaps = 27/235 (11%)
Query: 329 PQQTTLLDLMDALPSSGPAAQKAEPWGPSASTNQTNPWGGPAAPASTSDPWPSFGTKPAA 388
P TT S P P P+ +T P P+ P +T+ P T
Sbjct: 1564 PPPTTTTTPPPTTTPSPPTTTTPSP--PTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPP 1621
Query: 389 SIDPWGVPTGATVQSVPKNSDPWAASQQPASSAGKRASDAWGAVSTTKPVSVSGSFELFS 448
+ P PT T ++P + P S P ++ + +TT P S +
Sbjct: 1622 TTTPITPPTSTT--TLPPTTTP---SPPPTTTTTPPPTTTPSPPTTTTP-SPPITTTTTP 1675
Query: 449 NLNGTIKDDFSEFDNLRTSKKTAESVTSLPSQN-------NGTTSPDPFESQPLTVASSK 501
T + + T+ T S T+ PS + TT+P P P T+ +
Sbjct: 1676 PPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTPSSTTTPSP---PPTTMTTPS 1732
Query: 502 PSSARKTPESFLGPNAALVNLDSLVTRPAPPA---QSLNPFLAPGAPATSAPVNP 553
P++ P + + L T P PP+ + +PF +T+ P P
Sbjct: 1733 PTTTPSPPTTTMTTLPPTTTSSPLTTTPLPPSITPPTFSPF------STTTPTTP 1781
Score = 31.6 bits (70), Expect = 2.4
Identities = 38/177 (21%), Positives = 58/177 (32%), Gaps = 7/177 (3%)
Query: 463 NLRTSKKTAESVTSLPSQNNGTT-SPDPFESQPLTVASSKPSSARKTPESFLGPNAALVN 521
N + + E VT + TT +P P + P+T ++ + TP P +
Sbjct: 1868 NYEINVQCCECVTQPTTMTTTTTENPTPPTTTPITTTTTVTPTP--TPTGTQTPTTTPIT 1925
Query: 522 LDSLVTRPAPPAQSLNPFLAPGAPATSAPVNPFQVNQPQPLTLNQLRGSPVLGTSTSFGP 581
+ VT P + P P T+ P P T + V T T G
Sbjct: 1926 TTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGT 1985
Query: 582 GPGVESMAVASMTSAAPQPALGATGSSLTPLGPAMMNMVGSVGIPPSAAQATGTTNP 638
+ + + T+ P P TG+ TP + P T TT P
Sbjct: 1986 QTPT-TTPITTTTTVTPTPT--PTGTQ-TPTTTPITTTTTVTPTPTPTGTQTPTTTP 2038
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 53.5 bits (127), Expect = 6e-07
Identities = 104/423 (24%), Positives = 155/423 (36%), Gaps = 74/423 (17%)
Query: 254 ARATSPRVSSELEQA----RPQTSGEEELQLQLALAMSREVAEQEERLRRGDDLRLQMAL 309
A+ TSP S +A RP G++ L++ ++R A + + + AL
Sbjct: 106 AKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAEETVARGKATEAPK---------RSAL 156
Query: 310 EE-SRRDTVKIPKKKEHGSLPQQTTLLDLMDALPSSGPAAQKAEPW-GPSASTNQTNPWG 367
+RRDT ++ +++ LP P+A+ P GP S +
Sbjct: 157 SAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSS----- 211
Query: 368 GPAAPASTSDPWPSFGTKPAA--------------SIDPW-----------GVPTGATVQ 402
A+ ST++P P+ +P+A S P G P
Sbjct: 212 --ASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHP 269
Query: 403 SVPKNSDPWAASQQPASSAGKRASDAWGAVSTTKPVSVSGSFELFSNLNGTIKDDFSEFD 462
S PK A + K A+ A G +S++ + S S L S T+
Sbjct: 270 SQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAALQSQAPPTLPA------ 323
Query: 463 NLRTSKKTAESVTSLP-------SQNNGTTSPDPFESQPLTVASSKPSSARKTPESFLGP 515
+S T + T LP + + T P P + P +S S + SFL P
Sbjct: 324 TPHSSSLTCQLATPLPLAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFL-P 382
Query: 516 NAALVNLDSLVTRP--APPAQSLNPFLAPGAPATSAPVNPFQVNQPQ---PLTLNQLRG- 569
+ L L T P APPA +L P AP +P S P++P PQ L ++ L+
Sbjct: 383 SPPL---SPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAP 439
Query: 570 ---SPVLGTSTSFGPGPGVESMAVASMTSAAPQPALGATGSSLTPLGPAMMNMVGSVGIP 626
P F P A+ S AP P+L A + P PA M S P
Sbjct: 440 FSPPPSPPVQAPFSPPASPPVSPSATPPSQAP-PSLAAPPLQVPPSPPASPPMSPSATPP 498
Query: 627 PSA 629
P A
Sbjct: 499 PQA 501
Score = 38.9 bits (89), Expect = 0.015
Identities = 82/342 (23%), Positives = 119/342 (34%), Gaps = 31/342 (9%)
Query: 320 PKKKEHGSLPQQTTLLDLMDALPSSGPAAQK--AEPWGPSASTNQTNPWGGPAAPASTSD 377
PK K +L DA P+ GP + A P PSA+ P PA P S+S
Sbjct: 272 PKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATP-SPSAALQSQAPPTLPATPHSSSL 330
Query: 378 PWPSFGTKPAASIDPWGVPTGATVQSVPKNSDPWAASQQPASSAGKRASDAWGAVSTTKP 437
P A P P+ +Q++P S P Q +S G A + + P
Sbjct: 331 TCQLATPLPLAPPSPSAPPS---LQTLP--SPPATPPSQATTSLGSPTLQATHSFLPSPP 385
Query: 438 VSVSGSFE-----------LFSNLNGTIKDDFSEFDNLRTSKKTAESVTSLPSQNNGTTS 486
+S + L + + S A +V L Q +
Sbjct: 386 LSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLL--QAPFSPP 443
Query: 487 PDPFESQPLTVASSKPSSARKTPESFLGPNAALVNLDSLVTRPAPPAQSLNPFLAPGAPA 546
P P P + +S P S TP S P+ A L + PA P S + P AP
Sbjct: 444 PSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPP 503
Query: 547 TSAPVNPFQVNQPQPLTLNQLRGSPVLGTSTSFGPGPG------VESMAVASMTSAAPQ- 599
A P Q+ +P P L P+ + PG S+ ++ + + PQ
Sbjct: 504 PLA-APPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQA 562
Query: 600 -PALGATGSSLTPLGPAMMNMVGSVGIPPSAAQATGTTNPFL 640
P L A + P PA + + PP+ T + P L
Sbjct: 563 PPVLAAPLLQVPPSPPASPTL-QAPRRPPTPGPDTSVSGPRL 603
Score = 36.2 bits (82), Expect = 0.096
Identities = 67/307 (21%), Positives = 100/307 (32%), Gaps = 53/307 (17%)
Query: 342 PSSGPAAQKAEPWGPSASTNQTNPWGGPAAPASTSDPWPSFGTKPAASIDPWGVPTGATV 401
P+S P A P A P P + T+ P P G K V G
Sbjct: 90 PASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGP-LGQKGLRISAEETVARGKAT 148
Query: 402 QSVPKNSDPWAASQQPASSAGKRASDAWGAVSTTKPVSVSGSFELFSNLNGTIKDDFSEF 461
++ PK S A SAG R + T P S
Sbjct: 149 EA-PKRS---------ALSAGARRDTSGPTPGTPSPAMARRS------------------ 180
Query: 462 DNLRTSKKTAESVTSLPSQNNGTTSPDPFESQPLTVAS-SKPSSARKTPESFLGPNA--- 517
+ A + LP P E +V+S S+ S+ +P + P+A
Sbjct: 181 -------RAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGG 233
Query: 518 ----ALVNLDSLVTRPAPPAQSLNPFLAPGAPATSAPVNPFQVNQPQPLTLNQLRGSPVL 573
A +L S T + PA+S G A P P +QP+P L LR P
Sbjct: 234 LQRPASRSLSSSATPLSSPARS-------GPSARGTPRAPAHPSQPKPKGLQALR--PPQ 284
Query: 574 GTSTSFGPGPGVESMAVASMTSAAPQPALGATGSSLTPLGPAMMNMVGSVGIPPSAAQAT 633
T P + ++ + + + +P AL + P P ++ + P A +
Sbjct: 285 VTPPRKDAAPALGPLSSSPLATPSPSAALQSQAPPTLPATPHSSSLTCQLATPLPLAPPS 344
Query: 634 GTTNPFL 640
+ P L
Sbjct: 345 PSAPPSL 351
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 52.4 bits (124), Expect = 1e-06
Identities = 99/399 (24%), Positives = 150/399 (37%), Gaps = 56/399 (14%)
Query: 254 ARATSPRVSSELEQA----RPQTSGEEELQLQLALAMSREVAEQEERLRRGDDLRLQMAL 309
A+ TSP S +A RP G++ L++ ++R A + + + AL
Sbjct: 97 AKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAEETVARGKATEAPK---------RSAL 147
Query: 310 EE-SRRDTVKIPKKKEHGSLPQQTTLLDLMDALPSSGPAAQKAEPW-GPSASTNQTNPWG 367
+RRDT ++ +++ LP P+A+ P GP S +
Sbjct: 148 SAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSS----- 202
Query: 368 GPAAPASTSDPWPSFGTKPAASID-----PWGVPTGATVQSVPKNSDPWAASQQPASSAG 422
A+ ST++P P+ +P+A + + AT S P S P +A P + A
Sbjct: 203 --ASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGP-SARGTPRAPAH 259
Query: 423 KRASDAWGAVSTTKPVSVSGSFELFSNLNGTIKDDFSEFDNLRTSKKTAESVTSLPSQN- 481
G + P + KD L +S S ++ PS +
Sbjct: 260 PSQPKPKGLQALRPP-----------QVTPPRKDAAPALGPLSSSPLATPSPSAPPSPSA 308
Query: 482 --NGTTSPDPFESQPLTVASSKPSSARKTPESFLGPNAALVNLDSLVTRP--APPAQSLN 537
+ T P P + P +S S + SFL P+ L L T P APPA +L
Sbjct: 309 PPSLQTLPSPPATPPSQATTSLGSPTLQATHSFL-PSPPL---SPLATPPPQAPPALALP 364
Query: 538 PFLAPGAPATSAPVNPFQVNQPQ---PLTLNQLRG----SPVLGTSTSFGPGPGVESMAV 590
P AP +P S P++P PQ L ++ L+ P F P
Sbjct: 365 PLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPS 424
Query: 591 ASMTSAAPQPALGATGSSLTPLGPAMMNMVGSVGIPPSA 629
A+ S AP P+L A + P PA M S PP A
Sbjct: 425 ATPPSQAP-PSLAAPPLQVPPSPPASPPMSPSATPPPQA 462
Score = 40.4 bits (93), Expect = 0.005
Identities = 80/333 (24%), Positives = 117/333 (35%), Gaps = 34/333 (10%)
Query: 320 PKKKEHGSLPQQTTLLDLMDALPSSGPAAQKAEP-WGPSASTNQTNPWGGPAAPASTSDP 378
P+ H S P+ L L P P + A P GP +S+ P P+AP S S P
Sbjct: 254 PRAPAHPSQPKPKGLQALRP--PQVTPPRKDAAPALGPLSSSPLATP--SPSAPPSPSAP 309
Query: 379 WPSFGTKPAASIDPWGVPTGATVQSVPKNSDPWAASQ--QPASSAGKRASDAWGAVSTTK 436
PS T P+ P T + + + + S P ++ +A A
Sbjct: 310 -PSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQA 368
Query: 437 PVSVSGSFELFSNLNGTIKDDFSEFDNLRTSKKTAESVTSLPS-QNNGTTSPDPFESQPL 495
P S S L L T A + ++ Q + P P P
Sbjct: 369 PPSPPASPPL---------------SPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPF 413
Query: 496 TVASSKPSSARKTPESFLGPNAALVNLDSLVTRPAPPAQSLNPFLAPGAPATSAPVNPFQ 555
+ +S P S TP S P+ A L + PA P S + P AP A P Q
Sbjct: 414 SPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLA-APPLQ 472
Query: 556 VNQPQPLTLNQLRGSPVLGTSTSFGPGPG------VESMAVASMTSAAPQ--PALGATGS 607
+ +P P L P+ + PG S+ ++ + + PQ P L A
Sbjct: 473 LAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLL 532
Query: 608 SLTPLGPAMMNMVGSVGIPPSAAQATGTTNPFL 640
+ P PA + + PP+ T + P L
Sbjct: 533 QVPPSPPASPTL-QAPRRPPTPGPDTSVSGPRL 564
Score = 37.7 bits (86), Expect = 0.033
Identities = 73/302 (24%), Positives = 103/302 (34%), Gaps = 58/302 (19%)
Query: 383 GTKPAASIDPWGVPTGATVQSVPKNSDPWAASQQPASSAGKRASDAWGAVSTTKPVSVSG 442
G KP A + G GAT+ + P S+ PAS G+RA A T P VS
Sbjct: 54 GRKPLA--ERAGGIGGATIPESAPRAGPTRTSRPPASGRGERAPPA----KNTSPGPVSS 107
Query: 443 SFELFSNLNGTIKDDFSEFDNLRTSKKTAES---VTSLPSQN-------NGTTSPDPFES 492
+GT + LR S + + T P ++ T+ P P
Sbjct: 108 P----GRASGTTRPGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTP 163
Query: 493 QPLTVASSKPS-----------SARKTPESFLGPNAALVNL-DSLVTRPAPPAQ------ 534
P S+ + SAR P + GP ++ + + T P+P A+
Sbjct: 164 SPAMARRSRAAGTEVGLPRPAPSARPRPPT-EGPRKSVSSASEHSTTEPSPAARRRPSAG 222
Query: 535 -------------SLNPFLAP---GAPATSAPVNPFQVNQPQPLTLNQLRGSPVLGTSTS 578
S P +P G A P P +QP+P L LR V
Sbjct: 223 GGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKD 282
Query: 579 FGP--GPGVESMAVASMTSAAPQPALGATGSSLTPLGPAMMNMVGSVGIPPSAAQATGTT 636
P GP S SA P P+ + +L P PA + + QAT +
Sbjct: 283 AAPALGPLSSSPLATPSPSAPPSPSAPPSLQTL-PSPPATPPSQATTSLGSPTLQATHSF 341
Query: 637 NP 638
P
Sbjct: 342 LP 343
>gi|206597507 HIV-1 Rev binding protein isoform 3 [Homo sapiens]
Length = 560
Score = 52.4 bits (124), Expect = 1e-06
Identities = 79/307 (25%), Positives = 122/307 (39%), Gaps = 39/307 (12%)
Query: 359 STNQTNPWGGPAAPASTSDPWPSFGTKPAASIDPWGVPTGATVQSVPKNSDP------WA 412
S+ +N G P A S P + G+ AAS++ A + PK+S +
Sbjct: 249 SSGSSNFGGFPTASHSPFQPQTTGGS--AASVNA----NFAHFDNFPKSSSADFGTFNTS 302
Query: 413 ASQQPASSAGKRASDAWGAVSTTKPVSVSGSFELFSNLNGTIKDDFSEFDNLRTSKKTAE 472
S Q AS+ K +++ G + K +++ +FS G D S F T K
Sbjct: 303 QSHQTASAVSKVSTNKAGLQTADKYAALANLDNIFSAGQGG--DQGSGFGT--TGKAPVG 358
Query: 473 SVTSLPSQNNGTTSP-------DPFESQPLTVASSKPSSARKTPESF----LGPNAALVN 521
SV S+PSQ++ ++ D S T +++ S++ + F + +A
Sbjct: 359 SVVSVPSQSSASSDKYAALAELDSVFSSAATSSNAYTSTSNASSNVFGTVPVVASAQTQP 418
Query: 522 LDSLVTRPAPPAQSLNPFLAPGAPATSAPVNPFQVNQPQPLTLNQLRGSPVLGTSTSFGP 581
S V P S NPF+A P+ ++ NPFQ N G+ + T FG
Sbjct: 419 ASSSVPAPFGATPSTNPFVAAAGPSVASSTNPFQTNARGATAAT--FGTASMSMPTGFGT 476
Query: 582 GPGVESMAVASMTSAAPQPALGA-------TGSSLTPLGPAMMNMVGSVGIPPSAAQATG 634
P S+ S + + QPA A T S P G A V P A G
Sbjct: 477 -PAPYSLP-TSFSGSFQQPAFPAQAAFPQQTAFSQQPNGFAAFGQTKPVVTPFGQVAAAG 534
Query: 635 -TTNPFL 640
++NPF+
Sbjct: 535 VSSNPFM 541
>gi|41281612 zinc finger protein 828 [Homo sapiens]
Length = 812
Score = 50.1 bits (118), Expect = 6e-06
Identities = 70/278 (25%), Positives = 110/278 (39%), Gaps = 69/278 (24%)
Query: 311 ESRRDTVKIPKKKEHGSLPQQTTLLDLMDALPSSGPAAQKAEPWGPS--------ASTNQ 362
ES + T+ PK ++ P+ TL + P S A EPWGPS S
Sbjct: 216 ESVKATLSNPKPQKQSHFPE--TLGPPSASSPESPVLAASPEPWGPSPAASPESRKSART 273
Query: 363 TNPWGGPAAPASTSDPWPSFGTKPAASIDPW----GVPTGATVQSVPKNSDPWAASQQPA 418
T+P +P+ + +PW F PA S +P V G+ P + PW ++ P+
Sbjct: 274 TSPEPRKPSPSESPEPWKPF---PAVSPEPRRPAPAVSPGSWKPGPPGSPRPWKSN--PS 328
Query: 419 SSAGKRASDAWGAVSTTKPVSVSGSFELFSNLNGTIKDDFSEFDNLRTSKKTAESVTSLP 478
+S+G W KP K A SV+ P
Sbjct: 329 ASSG-----PW------KPA------------------------------KPAPSVSPGP 347
Query: 479 SQNNGTTSPDPFESQPLTVASSKPSSARKTPESFLGPNAALVNLDSLVTRPAPPAQSLNP 538
+ + SP P++ P +V+S+ S+ +P S+ P A+ + S P + P
Sbjct: 348 WKPIPSVSPGPWKPTP-SVSSASWKSSSVSPSSWKSPPASPESWKS----GPPELRKTAP 402
Query: 539 FLAPGAPATSAPVNPFQVNQPQPLTLNQLR---GSPVL 573
L+P PV+P ++ +P P ++R GSP L
Sbjct: 403 TLSPEHWKAVPPVSP-ELRKPGPPLSPEIRSPAGSPEL 439
Score = 33.5 bits (75), Expect = 0.62
Identities = 65/302 (21%), Positives = 100/302 (33%), Gaps = 60/302 (19%)
Query: 329 PQQTTLLDLMDALPSS--GPAAQ----KAEPWGPSASTNQTNPWGGPAAPASTSDPWPSF 382
P+ T L L P S P Q EP P++ ++ P P + P PS
Sbjct: 146 PKPTPLTPLEPQKPGSVVSPELQTPLPSPEPSKPASVSSPEPPKSVPVCESQKLAPVPSP 205
Query: 383 GTKPAASIDPWGV------PTGATVQSVPKNSDPWAASQQPASSAGKRASDAWGAVSTTK 436
+ A + P V P P+ P +AS P S + + WG
Sbjct: 206 EPQKPAPVSPESVKATLSNPKPQKQSHFPETLGPPSASS-PESPVLAASPEPWGPSPAAS 264
Query: 437 PVSVSGSFELFSNLNGTIKDDFSEFDNLRTSKKTAESVTSLPSQNNGTTSPDPFESQPLT 496
P S+K+A + + P + + + SP+P++ P
Sbjct: 265 P----------------------------ESRKSARTTSPEPRKPSPSESPEPWKPFPAV 296
Query: 497 -------VASSKPSSARKTPESFLGPNAALVNLDSLVTRPAPPAQSLNPFLAPGAPATSA 549
+ P S + P P + + S +PA PA S++P P P S
Sbjct: 297 SPEPRRPAPAVSPGSWKPGPPGSPRPWKSNPSASSGPWKPAKPAPSVSP--GPWKPIPSV 354
Query: 550 PVNPFQVNQPQPLTLNQLRGSPVLGTSTSFGPGPGVESMAVASMTSAAPQPALGATGSSL 609
P+ +P P S S+S P A + P P L T +L
Sbjct: 355 SPGPW---KPTPSV------SSASWKSSSVSPSSWKSPPASPESWKSGP-PELRKTAPTL 404
Query: 610 TP 611
+P
Sbjct: 405 SP 406
Score = 33.1 bits (74), Expect = 0.81
Identities = 43/175 (24%), Positives = 67/175 (38%), Gaps = 13/175 (7%)
Query: 471 AESVTSLPSQNNGTTSPDPFESQPLTVASSKPSSARKTPESFLGPNAALVNLDSLVTRPA 530
++ + +PS +P ES T+++ KP PE+ P+A+ L P
Sbjct: 196 SQKLAPVPSPEPQKPAPVSPESVKATLSNPKPQKQSHFPETLGPPSASSPESPVLAASPE 255
Query: 531 P--PAQSLNPFLAPGAPATS-APVNPFQVNQPQP------LTLNQLRGSPVLGTSTSFGP 581
P P+ + +P A TS P P P+P ++ R +P + S+ P
Sbjct: 256 PWGPSPAASPESRKSARTTSPEPRKPSPSESPEPWKPFPAVSPEPRRPAPAVSPG-SWKP 314
Query: 582 GPGVESMAVASMTSAAP---QPALGATGSSLTPLGPAMMNMVGSVGIPPSAAQAT 633
GP S SA+ +PA A S P P G PS + A+
Sbjct: 315 GPPGSPRPWKSNPSASSGPWKPAKPAPSVSPGPWKPIPSVSPGPWKPTPSVSSAS 369
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 50.1 bits (118), Expect = 6e-06
Identities = 79/334 (23%), Positives = 106/334 (31%), Gaps = 65/334 (19%)
Query: 320 PKKKEHGSLPQQTTLLDLMDALPSSGPA--AQKAEPWGPSASTNQT-------NPWGGPA 370
PK+ P+Q L + + P A A K P PS T +P GGPA
Sbjct: 896 PKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPA 955
Query: 371 APASTSDPWPSFGTKPAASIDPWGVPTGATVQSVPKNSDPWAASQQPASSAGKRASDAWG 430
P+ P P T P+ P G PK + A+ P+ G G
Sbjct: 956 TPSPKWAPTPPAATPPS--------PKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKG 1007
Query: 431 AVSTTKPVSVSGSFELFSNLNGTIKDDFSEFDNLRTSKKTAESVTSLPSQNNGTTSPDPF 490
A + P +V+ S K + + T P + + P
Sbjct: 1008 APT---PPAVT-----------------------PPSPKGSPAATPFPKGASTPPAATPP 1041
Query: 491 ESQPLTVASSKPSSARKTPESFLGPNAALVNLDSLVTRPAPPAQSLNPFLAPGAPATSAP 550
+ A+ P A TP + L SL P PPA + P G PAT +P
Sbjct: 1042 SPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAAT--PPSPKGGPATPSP 1099
Query: 551 VN---PFQVNQPQP---LTLNQLRGSPVLGTSTSFGPGPGVESMAVASMTSAAPQPALGA 604
P P P L +G+P +T P G+ A P P
Sbjct: 1100 KGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGL----------ATPPPKGAP 1149
Query: 605 TGSSLTPLGPAMMNMVGSVGIPPSAAQATGTTNP 638
T + TP P G PP A T P
Sbjct: 1150 TTPAATPPSP----KGGLATPPPKGAPTTPAATP 1179
Score = 46.2 bits (108), Expect = 9e-05
Identities = 74/305 (24%), Positives = 103/305 (33%), Gaps = 60/305 (19%)
Query: 342 PSSGPAAQKAEPWGPSA-STNQTNPWGGPAAPASTSDPWPSFGTKPAASIDPWGVPTGAT 400
P GPA + W P+ + +P GGPA P+ P P T P+ P G
Sbjct: 950 PKGGPATPSPK-WAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPS--------PKGGP 1000
Query: 401 VQSVPKNSDPWAASQQPASSAGKRASDAWGAVSTTKPVSVSGSFELFSNLNGTIKDDFSE 460
PK + P + P S G A+ + ++T P + S
Sbjct: 1001 ATPSPKGA-PTPPAVTPPSPKGSPAATPFPKGASTPPAATPPS-----------PKGSPA 1048
Query: 461 FDNLRTSKKTAESVTSLPSQNNGTTSPDPFESQPLTVASSKPS----SARKTPESFLGPN 516
L T + T LPS G +P + P A++ PS A +P+ P
Sbjct: 1049 ATPLPKGAPTTPAAT-LPSPKGGPATPS-LKGAPTPPAATPPSPKGGPATPSPKGAPMPP 1106
Query: 517 AALVNLDSLVTRPAPPAQSLNP--FLAPGAPATSAPVNPFQVNQPQPLTLNQLRGSPVLG 574
AA T P+P P AP PA + P + P P +G+P
Sbjct: 1107 AA--------TPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPP------KGAPTTP 1152
Query: 575 TSTSFGPGPGVESMAVASMTSAAPQPALGATGSSLTPLGPAMMNMVGSVGIP-PSAAQAT 633
+T P G+ A P P T + TP P G + P P A T
Sbjct: 1153 AATPPSPKGGL----------ATPPPKGAPTTPAATPPSPK-----GGLATPSPKGAPTT 1197
Query: 634 GTTNP 638
P
Sbjct: 1198 PAATP 1202
Score = 43.9 bits (102), Expect = 5e-04
Identities = 69/302 (22%), Positives = 100/302 (33%), Gaps = 42/302 (13%)
Query: 344 SGPAAQKAEPWGPSASTNQTNPWGGPAAPASTSDPWPSFGTKPAASIDPWGVPTGATVQS 403
SG +A + + + +P G +P + P P I P S
Sbjct: 775 SGASATASSKGTLTYLADSPSPLGVSVSPQTKRPPTKKGSAGPDTPIGNLSSPVSPVEAS 834
Query: 404 -VPKNSDPWAASQQ-PASSAGKRASDAWGAV--STTKPVSVSGSFELFSNLNGTIKDDFS 459
+P+NS + S+ PA++ GA S P+S G
Sbjct: 835 FLPENSLSFQGSKDSPATTHSPTPPSPKGAPTPSAVTPLSPKGV---------------- 878
Query: 460 EFDNLRTSKKTAESVTSLPSQNNGTTSPDPFESQPLTVASSKPSSARKTPESFLGPNAAL 519
L + SV +LP G +P P ++ L++ SS P AR TP +
Sbjct: 879 ---TLPPKETPTPSVVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAP-----KGI 930
Query: 520 VNLDSLVTRPAPPAQSLNPFLAPGAPATSAP---VNPFQVNQPQPLTLNQLRGSPVLGTS 576
S P PPA + P G PAT +P P P P +G P S
Sbjct: 931 PASPSPKGAPTPPAAT--PPSPKGGPATPSPKWAPTPPAATPPSP------KGGPAT-PS 981
Query: 577 TSFGPGPGVESMAVASMTSAAPQPALGATGSSLTPLGPAMMNMVGSVGIPPSAAQATGTT 636
P P + A P P T ++TP P+ + P A+ T
Sbjct: 982 PKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTP--PSPKGSPAATPFPKGASTPPAAT 1039
Query: 637 NP 638
P
Sbjct: 1040 PP 1041
Score = 43.5 bits (101), Expect = 6e-04
Identities = 76/307 (24%), Positives = 105/307 (34%), Gaps = 41/307 (13%)
Query: 342 PSSGPA--AQKAEPWGPSASTNQTNPWGGPAAPASTSDPWPSFGTKPAASIDPWGV--PT 397
P GPA + K P P+A+ +P GGPA P+ P P T P+ P P
Sbjct: 973 PKGGPATPSPKGAPTPPAATP--PSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPK 1030
Query: 398 GATVQSVPKNSDPWAASQQPASSAGKRASDAWGAVSTTKPVSVSGSFELFSNLNGTIKDD 457
GA S P + P + PA++ + + A + P + L
Sbjct: 1031 GA---STPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATP 1087
Query: 458 FSEFDNLRT-SKKTA--ESVTSLPSQNNGTTSPDPFESQPLTVASSKPS--SARKTPESF 512
S T S K A + PS G +P P + P T A++ PS TP
Sbjct: 1088 PSPKGGPATPSPKGAPMPPAATPPSPKGGLATP-PHKGAPTTPAATPPSPKGGLATPP-- 1144
Query: 513 LGPNAALVNLDSLVTRPAPPAQSLNPFLAPGAPATSAPVNPFQVNQPQPLTLNQLRGSPV 572
P A + P + P AP PA + P + P P +G+P
Sbjct: 1145 --PKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSP------KGAPT 1196
Query: 573 LGTSTSFGPGPGVESMAVASMTSAAPQPALGATGSSLTPLGPAMMNMVGSVGIP-PSAAQ 631
+T P G+ A P P T + TP P G + P P A
Sbjct: 1197 TPAATPPSPKGGL----------ATPSPKGAPTTPAATPPSPK-----GGLATPSPKGAP 1241
Query: 632 ATGTTNP 638
T P
Sbjct: 1242 TTPAATP 1248
Score = 41.2 bits (95), Expect = 0.003
Identities = 94/365 (25%), Positives = 130/365 (35%), Gaps = 63/365 (17%)
Query: 337 LMDALPSSGPAAQKAEPWG--PSASTNQTNPWGGP--AAPASTSDP-WPSFGTKPAASID 391
L + LP PA+ P G SAS +T+ + GP A P S P+ P S D
Sbjct: 595 LGEPLPIGKPASSMTSPLGVNSSASVIKTDSYAGPDSAGPLLKSSLITPTVAAFPLESAD 654
Query: 392 PWGV-PTGA----------------TVQSVPKNSD------------PWAASQQPASSAG 422
P GV PT A TV PKN P A+ P + +
Sbjct: 655 PAGVAPTTAKGTSTYTTTASPFLEGTVSLAPKNHPVKEGTLTTLPLVPTASENCPVAPSP 714
Query: 423 KR--ASDAWGAVSTTKPVSV-SGSFELFSNLNGTIKDD----FSEFDNLRTSKK---TAE 472
+ A A ++ P SV S S GT K D S + +S K T +
Sbjct: 715 QNTCAPLATLVLAPEIPKSVPSPSLPPAGTPPGTKKVDGISHTSALAPVASSPKECPTED 774
Query: 473 SVTSLPSQNNGTTSPDPFESQPLTVASSKPSSARKTPESFLGPNAALVNLDSLVTRPAP- 531
S S + + GT + PL V+ S + T + GP+ + NL S V+
Sbjct: 775 SGASATASSKGTLTYLADSPSPLGVSVSPQTKRPPTKKGSAGPDTPIGNLSSPVSPVEAS 834
Query: 532 --PAQSLNPFLAPGAPATS-APVNPFQVNQPQPLTLNQLRGS----PVLGTST------- 577
P SL+ + +PAT+ +P P P P + L P T T
Sbjct: 835 FLPENSLSFQGSKDSPATTHSPTPPSPKGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLP 894
Query: 578 --SFGPG-PGVESMAVASMTSAAPQPALGATGSSLTPLGPAMMNM-VGSVGIPPSAAQAT 633
GP P + SMTS++P+ A P P+ PPS
Sbjct: 895 FPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGP 954
Query: 634 GTTNP 638
T +P
Sbjct: 955 ATPSP 959
Score = 40.0 bits (92), Expect = 0.007
Identities = 76/295 (25%), Positives = 107/295 (36%), Gaps = 69/295 (23%)
Query: 372 PASTSDPWPSFGTKPAASIDPWGVPTG-------ATVQSVPKNSDPWAASQQPASSAGK- 423
P P S GT P +P + AT S P +S P ++ +P S A
Sbjct: 426 PLVAQMPVSSVGTTPLVVTNPCTIAAAPTTTFEVATCVSPPMSSGP-ISNIEPTSPAALV 484
Query: 424 ----RASDAWGAVSTTKPVSVSGSF---ELFSNLNGTIKDDFSEFDNLRTSKKTAESVTS 476
+ V+TT + VS E NL ++ F +L+T + E
Sbjct: 485 MAPVAPKEPSTQVATTLRIPVSPPLPDPEDLKNLPSSVLVKFPTQKDLQTVPASLEGAPF 544
Query: 477 LPSQNNGTTSPDPFESQPLTVASSKPS----SARKTPESFLGPNAALVNLDSLVTRPAPP 532
P+Q TT DP PL A+ K S S +PE L P A L
Sbjct: 545 SPAQAGLTTKKDP-TVLPLVQAAPKNSPSFQSTSSSPEIPLSPEATLAK----------- 592
Query: 533 AQSLNPFLAPGAPATSAPVNPFQVNQPQPLTLNQLRGSPVLGTSTSFGP---GPGVESMA 589
+SL L G PA+S +P VN + V+ T + GP GP ++S
Sbjct: 593 -KSLGEPLPIGKPASSM-TSPLGVNS----------SASVIKTDSYAGPDSAGPLLKSSL 640
Query: 590 VASMTSAAPQPALGATGSSLTPLGPAMMNMVGSVGIPPSAAQATG----TTNPFL 640
+ +A P L PA G+ P+ A+ T T +PFL
Sbjct: 641 ITPTVAAFP----------LESADPA--------GVAPTTAKGTSTYTTTASPFL 677
Score = 39.3 bits (90), Expect = 0.011
Identities = 78/321 (24%), Positives = 101/321 (31%), Gaps = 41/321 (12%)
Query: 342 PSSGPAAQKAEPWGPSASTNQTNPWGGPAAPASTSDPWPSFGTKPAASIDPWGVPT---- 397
P P A P P +P G P PA+T P P G A+ P G PT
Sbjct: 1214 PKGAPTTPAATPPSPKGGLATPSPKGAPTTPAAT-PPSPKGG---PATPPPKGAPTPPAA 1269
Query: 398 ------GATVQSVPKNSDPWAASQQPASSAGKRASDAWGAVS--TTKPVSVSGSFELFSN 449
G K + A P+ G S GA + P S GS
Sbjct: 1270 TPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGS------ 1323
Query: 450 LNGTIKDDFSEFDNLRT---SKKTAESVTSLPSQNNGTTSPDPFE--SQPLTVASSKPSS 504
GT + T K T + PS G T+P E + P S K
Sbjct: 1324 -PGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGP 1382
Query: 505 ARKTPESFLGPNAALVNLDSLVTRPAPPAQSLNPFLAPGAPAT---SAPVNPFQVNQP-- 559
A P GP D +P L+P AP P T +A + + P
Sbjct: 1383 AMTPPSPKRGPAIPSPKGDP----TSPAVIPLSPKKAPATPVTREGAATPSKGDLTPPAV 1438
Query: 560 QPLTLNQ--LRGSPVLGTSTSFGPGPGVESMAVASMTSAAPQPALGATGSS--LTPLGPA 615
P++L + +P G +T G P P AT SS P PA
Sbjct: 1439 TPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPA 1498
Query: 616 MMNMVGSVGIPPSAAQATGTT 636
M + PS+ + T
Sbjct: 1499 PMGAPTLPAVIPSSPKEVPAT 1519
Score = 38.9 bits (89), Expect = 0.015
Identities = 69/319 (21%), Positives = 101/319 (31%), Gaps = 42/319 (13%)
Query: 342 PSSGPAAQKAEPWGPSASTNQTNPWGGPAAPASTSDPWPSFGTKPAASIDPWGVPTGATV 401
P P A P P S P G P PA T T PA + G PT +
Sbjct: 1306 PKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSS 1365
Query: 402 QSVPKNSDPWAASQQPASSAGKRASDAWGAVSTTKPVSVSGSFELFSNLNGTIKDDFSEF 461
+ P PA++ + A S + ++ K D +
Sbjct: 1366 KEGP---------TPPAATPSHKGGPAMTPPSPKRGPAIPSP-----------KGDPTSP 1405
Query: 462 DNLRTSKKTAESVTSLPSQNNGTTSPDPFESQPLTV---------ASSKPSSARKTPESF 512
+ S K A + P G +P + P V A+S P TP S
Sbjct: 1406 AVIPLSPKKAPAT---PVTREGAATPSKGDLTPPAVTPVSLKKAPATSAPKGGPATPSSK 1462
Query: 513 LGPNAALVNLDSLVTRPAPP--AQSLNPFLAPGAPA-TSAPVNPFQV-NQPQPLTLN-QL 567
P V S PAP A S +P AP PA AP P + + P+ +
Sbjct: 1463 GDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATPAPMGAPTLPAVIPSSPKEVPATPSS 1522
Query: 568 RGSPVLGTSTSFGPGPGV-----ESMAVASMTSAAPQPALGATGSSLTPLGPAMMNMVGS 622
R P+ T+T E++ +MT +P+ P P+
Sbjct: 1523 RRDPIAPTATLLSKKTPATLAPKEALIPPAMTVPSPKKTPAIPTPKEAPATPSSKEASSP 1582
Query: 623 VGIPPSAAQATGTTNPFLL 641
+ PS + + L+
Sbjct: 1583 PAVTPSTYKGAPSPKELLI 1601
Score = 31.6 bits (70), Expect = 2.4
Identities = 65/306 (21%), Positives = 99/306 (32%), Gaps = 47/306 (15%)
Query: 342 PSSGPAAQKAEPWGPSASTNQTNPWGGPAAPASTSDPWPSFGTKPAASIDPWGVPTGATV 401
P P P P P G P +P T T PA+ G
Sbjct: 1610 PKEAPTPPAVTPPSPEKGPATPAPKGTPTSPPVTPSSLKDSPTSPASVTCKMGATVPQAS 1669
Query: 402 QSVPKNSDPWAASQ---QPA-------SSAGKRASDAWGAVSTTKPVSVSGSFELFSNLN 451
+ +P P A + PA ++ ++ + +T+ P+ S + S
Sbjct: 1670 KGLPAKKGPTALKEVLVAPAPESTPIITAPTRKGPQTKKSSATSPPICPDPSAKNGSKGP 1729
Query: 452 GTIKDDFSEFDNLRTSKKTAESVTSLPSQNNGTTSPDPFESQPLTVAS-----SKPSSAR 506
+ + S KTA+ + S P+ S PLT A+ KP SA
Sbjct: 1730 LSTVAPAPLLPVQKDSSKTAKGKDASHSPKGPLAPPESKASTPLTAAAFEKVLPKPESAS 1789
Query: 507 KT--------------------PESFLGPNAALVNLDSLVTRPAPPA--QSLNPFLAPGA 544
+ P+ P++ + L+S ++P PA L P + P
Sbjct: 1790 VSAAPSPPVSLPLAPSPVPTLPPKQQFLPSSPGLVLES-PSKPLAPADEDELLPLIPPEP 1848
Query: 545 PATSAPVNPFQVNQPQPLTLNQLRGSPVLGTS-----TSFGPGPGVESMAVASMTSAAPQ 599
+ P VN P P + G PV S T G G ES + S+ Q
Sbjct: 1849 ISGGVPFQSVLVNMPTP----KSAGIPVPTPSAKQPVTKNNKGSGTESDSDESVPELEEQ 1904
Query: 600 PALGAT 605
+ AT
Sbjct: 1905 DSTQAT 1910
Score = 31.2 bits (69), Expect = 3.1
Identities = 56/225 (24%), Positives = 83/225 (36%), Gaps = 40/225 (17%)
Query: 391 DPWGVPTGATVQSVPKNSDPWAASQQ----PASSAGKRASDAWG--------AVSTTKPV 438
DP +P VQ+ PKNS + ++ P S A + G A S T P+
Sbjct: 556 DPTVLPL---VQAAPKNSPSFQSTSSSPEIPLSPEATLAKKSLGEPLPIGKPASSMTSPL 612
Query: 439 SVSGSFELFSNLNGTIKDDFSEFDN---LRTSKKTAESVTSLPSQNNGTTSPDPFESQPL 495
V+ S + D ++ D+ L S +V + P + S DP P
Sbjct: 613 GVNSSASVIKT------DSYAGPDSAGPLLKSSLITPTVAAFPLE-----SADPAGVAPT 661
Query: 496 TVASSKPSSARKTP----ESFLGPNAALVNLDSLVTRPAPPAQSLNPFLAPGAPATSAPV 551
T + + +P L P V +L T P P S N +AP T AP+
Sbjct: 662 TAKGTSTYTTTASPFLEGTVSLAPKNHPVKEGTLTTLPLVPTASENCPVAPSPQNTCAPL 721
Query: 552 NPFQVNQPQPLTLNQLRGSPVLGTSTSFGPGPGVESMAVASMTSA 596
+ P ++ SP L + G PG + + S TSA
Sbjct: 722 ATLVLAPEIPKSV----PSPSLPPA---GTPPGTKKVDGISHTSA 759
Score = 29.6 bits (65), Expect = 8.9
Identities = 76/331 (22%), Positives = 113/331 (34%), Gaps = 34/331 (10%)
Query: 316 TVKIPKKKEHGSLPQ-QTTLLDLMDAL----------PSSGPAAQKAEPWGPSASTNQTN 364
T +P ++ PQ +T +L + AL P+ P A P ++ NQ +
Sbjct: 6 TETVPATEQELPQPQAETAVLPMSSALSVTAALGQPGPTLPPPCSPAPQQCPLSAANQAS 65
Query: 365 PWGGPAAPASTSDPWPSFGTKPAASIDPWGVPTGATVQSVPKNSDPWAASQQPASSAGKR 424
P+ P+ AST P F + + P G A +P P P S A
Sbjct: 66 PFPSPSTIASTPLEVP-FPQSSSGTALPLGTAPEAPT-FLPNLIGP------PISPAALA 117
Query: 425 ASDAWGAVSTTKPVSVSGSFELFSNLNGTIKDDFSEFDNLRTSKKTAESVTSLPSQNNGT 484
+ A + S S L + +++ + NL TS SV S + T
Sbjct: 118 LASPMIAPTLKGTPSSSAPLALVALAPHSVQKSSAFPPNLLTS---PPSVAVAESGSVIT 174
Query: 485 TSPDPFESQPLTVASSKPSSARKTPESFLGPNAALVNLDSLVTRPAPPAQSLNPFLAPGA 544
S S+P T + PS P+ P + + P QS L
Sbjct: 175 LSAPIAPSEPKTNLNKVPSEVVPNPKGTPSPPCIVSTVPYHCVTPMASIQSGVASLPQTT 234
Query: 545 PATSAPVNPFQVN---------QPQPLTLNQLRG--SPVLGTSTSFGPGPGVESMAVASM 593
P T+ + QV PQ L+G SP S S P V S +
Sbjct: 235 PTTTLAIASPQVKDTTISSVLISPQNPGSLSLKGPVSPPAALSLSTQSLPVVTSSQKTAG 294
Query: 594 TSAAPQPALGATGSSLTPLGPAMMNMVGSVG 624
+ P + + GS L PL + V +G
Sbjct: 295 PNTPPDFPI-SLGSHLAPLHQSSFGSVQLLG 324
>gi|206597505 HIV-1 Rev binding protein isoform 1 [Homo sapiens]
Length = 584
Score = 48.9 bits (115), Expect = 1e-05
Identities = 64/246 (26%), Positives = 98/246 (39%), Gaps = 27/246 (10%)
Query: 414 SQQPASSAGKRASDAWGAVSTTKPVSVSGSFELFSNLNGTIKDDFSEFDNLRTSKKTAES 473
S Q AS+ K +++ G + K +++ +FS G D S F T K S
Sbjct: 328 SHQTASAVSKVSTNKAGLQTADKYAALANLDNIFSAGQGG--DQGSGFGT--TGKAPVGS 383
Query: 474 VTSLPSQNNGTTSP-------DPFESQPLTVASSKPSSARKTPESF----LGPNAALVNL 522
V S+PSQ++ ++ D S T +++ S++ + F + +A
Sbjct: 384 VVSVPSQSSASSDKYAALAELDSVFSSAATSSNAYTSTSNASSNVFGTVPVVASAQTQPA 443
Query: 523 DSLVTRPAPPAQSLNPFLAPGAPATSAPVNPFQVNQPQPLTLNQLRGSPVLGTSTSFGPG 582
S V P S NPF+A P+ ++ NPFQ N G+ + T FG
Sbjct: 444 SSSVPAPFGATPSTNPFVAAAGPSVASSTNPFQTNARGATAAT--FGTASMSMPTGFGT- 500
Query: 583 PGVESMAVASMTSAAPQPALGA-------TGSSLTPLGPAMMNMVGSVGIPPSAAQATG- 634
P S+ S + + QPA A T S P G A V P A G
Sbjct: 501 PAPYSLP-TSFSGSFQQPAFPAQAAFPQQTAFSQQPNGFAAFGQTKPVVTPFGQVAAAGV 559
Query: 635 TTNPFL 640
++NPF+
Sbjct: 560 SSNPFM 565
>gi|38570132 HIV-1 Rev binding protein isoform 2 [Homo sapiens]
Length = 562
Score = 48.9 bits (115), Expect = 1e-05
Identities = 81/326 (24%), Positives = 123/326 (37%), Gaps = 56/326 (17%)
Query: 359 STNQTNPWGGPAAPASTSDPWPSFGTKPAASIDPWGVPTGATVQSVPKNSDP------WA 412
S+ +N G P A S P + G+ AAS++ A + PK+S +
Sbjct: 249 SSGSSNFGGFPTASHSPFQPQTTGGS--AASVNA----NFAHFDNFPKSSSADFGTFNTS 302
Query: 413 ASQQPASSAGKRASDAWGAVSTTKPVSVSGSFELFSNLNGTIKDDFSEFDNLRTSKKTAE 472
S Q AS+ K +++ G + K +++ +FS G D S F T K
Sbjct: 303 QSHQTASAVSKVSTNKAGLQTADKYAALANLDNIFSAGQGG--DQGSGFGT--TGKAPVG 358
Query: 473 SVTSLPSQNNGTTSP-------DPFESQPLTVASSKPSSARKTPESF----LGPNAALVN 521
SV S+PSQ++ ++ D S T +++ S++ + F + +A
Sbjct: 359 SVVSVPSQSSASSDKYAALAELDSVFSSAATSSNAYTSTSNASSNVFGTVPVVASAQTQP 418
Query: 522 LDSLVTRPAPPAQSLNPFLAPGAPATSAPVNPFQVNQPQPLTLNQLRGSPVLGTSTSFG- 580
S V P S NPF+A P+ ++ NPFQ N G+ + T FG
Sbjct: 419 ASSSVPAPFGATPSTNPFVAAAGPSVASSTNPFQTNARGATAAT--FGTASMSMPTGFGT 476
Query: 581 PGP---------------GVESMAVASMTSAAPQP------ALGATGSSLTPLGPAMMNM 619
P P A T+ + QP A G T +TP G
Sbjct: 477 PAPYSLPTSFSGSFQQPAFPAQAAFPQQTAFSQQPNGAGFAAFGQTKPVVTPFGQVAAAG 536
Query: 620 VGS----VGIPPSA-AQATGTTNPFL 640
V S G P + +TNPFL
Sbjct: 537 VSSNPFMTGAPTGQFPTGSSSTNPFL 562
>gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens]
Length = 2639
Score = 48.5 bits (114), Expect = 2e-05
Identities = 55/287 (19%), Positives = 97/287 (33%), Gaps = 22/287 (7%)
Query: 329 PQQTTLLDLMDALPSSGPAAQKAEPWGPSASTNQTNPWGGPAAPASTSDPWPSFGTKPAA 388
P T + P+ P + P ++T P P T P + T
Sbjct: 1518 PTSTPITTTTTVTPTPTPTGTQTPTPTPISTTTTVTP---TPTPTGTQTPTTTPITT-TT 1573
Query: 389 SIDPWGVPTGATVQSVPKNSDPWAASQQPASSAGKRASDAWGAVSTTKPVSVSGSFELFS 448
++ P PTG + + + P ++ K +T P++ + +
Sbjct: 1574 TVTPTPTPTGTQTPTTVLITTTTTMTPTPTPTSTKS--------TTVTPITTTTTVTATP 1625
Query: 449 NLNGTIKDDFSEFDNLRTSKKTAESVTSLPSQNNGTTSPDPFESQ-PLT-VASSKPSSAR 506
GT T +VT P+ G+T P S P+ + +S P
Sbjct: 1626 TPTGTQTPTMIPIS-------TTTTVTPTPTPTTGSTGPPTHTSTAPIAELTTSNPPPES 1678
Query: 507 KTPESFLGPNAALVNLDSLVTRPAPPAQSLNPFLAPGAPATSAPVNPFQVNQPQPLTLNQ 566
TP++ ++ L +L++ PPA + P P + P P T
Sbjct: 1679 STPQTSRSTSSPLTESTTLLST-LPPAIEMTSTAPPSTPTAPTTTSGGHTLSPPPSTTTS 1737
Query: 567 LRGSPVLGTSTSFGPGPGVESMAVASMTSAAPQPALGATGSSLTPLG 613
G+P GT+T P ++ + ++ P P +T S + G
Sbjct: 1738 PPGTPTRGTTTGSSSAPTPSTVQTTTTSAWTPTPTPLSTPSIIRTTG 1784
Score = 42.0 bits (97), Expect = 0.002
Identities = 57/284 (20%), Positives = 98/284 (34%), Gaps = 22/284 (7%)
Query: 356 PSASTNQTNPWGGPAAPASTSDPWPSFGTKPAASIDPWGVPTGATVQSVPKNSD-PWAAS 414
P+ + QT P P +T P P+ + P T T P + P +
Sbjct: 1395 PTPTGTQT-PTSTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQAPTPTA 1453
Query: 415 QQPASSAGKRASDAWGAVSTTKPVSVSGSFELFSNLNGTIKDDFSEFDNLRTSKKTAESV 474
S+ + TT P++ + + GT T+ T +V
Sbjct: 1454 ITTTSTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPT-------PTAITTTTTV 1506
Query: 475 TSLPSQNNGTTSPDPFESQPLTVASSKPSSARKTPESFLGPNAALVNLDSLVTRPAPPAQ 534
T P+ GT +P S P+T ++ + TP P ++ + VT P
Sbjct: 1507 TPTPTPT-GTQTPT---STPITTTTTVTPTP--TPTGTQTPTPTPISTTTTVTPTPTPTG 1560
Query: 535 SLNPFLAPGAPATSAPVNPFQVNQPQPLTLNQLRGSPVLGTSTSFGPGPGVESMAVASMT 594
+ P P T+ P P T+ ++ T+T+ P P S ++T
Sbjct: 1561 TQTPTTTPITTTTTVTPTPTPTGTQTPTTV-------LITTTTTMTPTPTPTSTKSTTVT 1613
Query: 595 SAAPQPALGATGSSLTPLGPAMMNMVGSVGIPPSAAQATGTTNP 638
+ AT + P M+ + + + P+ TG+T P
Sbjct: 1614 PITTTTTVTATPTPTGTQTPTMIPISTTTTVTPTPTPTTGSTGP 1657
Score = 40.8 bits (94), Expect = 0.004
Identities = 59/324 (18%), Positives = 106/324 (32%), Gaps = 27/324 (8%)
Query: 329 PQQTTLLDLMDALPSSGPAAQKAEPWGPSASTNQTNPWGGPAAPASTSDPWPSFGTKPAA 388
P T + P+ P + P +T P P T P P+ T +
Sbjct: 1403 PTSTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTP---TPTPTGTQAPTPTAITT-TS 1458
Query: 389 SIDPWGVPTGATVQSVPKNSDPWAASQQPASSAGKRASDAWGAVSTTKPVSVSGSFELFS 448
++ P PTG + + + P + + + A++TT V+ + +
Sbjct: 1459 TVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTPT--AITTTTTVTPTPT----- 1511
Query: 449 NLNGTIKDDFSEFDNLRTSKKT-----AESVTSLPSQNNGTTSPDPFESQPLT-----VA 498
GT + T T ++ T P T +P P + T +
Sbjct: 1512 -PTGTQTPTSTPITTTTTVTPTPTPTGTQTPTPTPISTTTTVTPTPTPTGTQTPTTTPIT 1570
Query: 499 SSKPSSARKTPESFLGPNAALVNLDSLVTRPAPPAQSLNPFLAPGAPATSAPVNPFQVNQ 558
++ + TP P L+ + +T P + + + P T+ P
Sbjct: 1571 TTTTVTPTPTPTGTQTPTTVLITTTTTMTPTPTPTSTKSTTVTPITTTTTVTATPTPTGT 1630
Query: 559 PQPLTLNQLRGSPVLGTST----SFGPGPGVESMAVASMTSAAPQPALGATGSSLTPLGP 614
P + + V T T S GP + +A +T++ P P +S + P
Sbjct: 1631 QTPTMIPISTTTTVTPTPTPTTGSTGPPTHTSTAPIAELTTSNPPPESSTPQTSRSTSSP 1690
Query: 615 AMMNMVGSVGIPPSAAQATGTTNP 638
+ +PP A + T T P
Sbjct: 1691 LTESTTLLSTLPP-AIEMTSTAPP 1713
>gi|221139926 NHS-like 1 [Homo sapiens]
Length = 1606
Score = 47.8 bits (112), Expect = 3e-05
Identities = 92/384 (23%), Positives = 138/384 (35%), Gaps = 75/384 (19%)
Query: 293 QEERLRRGDDLRL--QMALEESRRDTVK-IPKKKE--HGSLPQQTTLLDLMDAL------ 341
Q++ L R L+ + L SR D+++ IPKK +G + ++ + L +L
Sbjct: 655 QDKSLSRNISLKKAKKPPLPPSRTDSLRRIPKKSSQCNGQVLNESLIATLQHSLQLSLPG 714
Query: 342 -----PSSGPAAQKAEPWGPSASTNQTNPWGGPAAPASTSDPWPSFGTKPAAS------- 389
PS P + EPW P + + T G A+T + + G P+ S
Sbjct: 715 KSGSSPSQSPCSDLEEPWLPRSRSQSTVSAGSSMTSATTPNVYSLCGATPSQSDTSSVKS 774
Query: 390 --IDPWGV-------------PTG--ATVQSVPKNSDPWAASQQPASSAGKRASDAWGAV 432
DPWG P G +T VP + P Q+ G RA+
Sbjct: 775 EYTDPWGYYIDYTGMQEDPGNPAGGCSTSSGVPTGNGPVRHVQE-----GSRATMPQVPG 829
Query: 433 STTKP--VSVSGSFELFSNLNGTIKDDFSEFDNLRTSKKTAESVTSLPSQNNGTTSPDP- 489
+ KP +S S + S +G +S N T+ S NG P P
Sbjct: 830 GSVKPKIMSPEKSHRVISPSSG-----YSSQSNTPTALTPVPVFLKSVSPANGKGKPKPK 884
Query: 490 ---FESQPLTVASSKPSSARKTPESFLGPNAALVNLDSLVTRPAPPAQSLNPFLAPGAPA 546
+S ++ S SS + + + + LD V P P P PA
Sbjct: 885 VPERKSSLISSVSISSSSTSLSSSTSTEGSGTMKKLDPAVGSPPAPPPPPVPSPPFPCPA 944
Query: 547 TSAPVNPFQVNQPQPLTLNQLRGSPVLGTSTSFGPGPGVESMAVASMTS---AAPQPALG 603
+P P P P + +GSP L S F P P + S + P+PAL
Sbjct: 945 DRSPFLP-----PPPPVTDCSQGSP-LPHSPVFPPPPPEALIPFCSPPDWCLSPPRPAL- 997
Query: 604 ATGSSLTPLGPAMMNMVGSVGIPP 627
S + P P S+ +PP
Sbjct: 998 ---SPILPDSPV------SLPLPP 1012
>gi|39995080 hypothetical protein LOC79567 [Homo sapiens]
Length = 1219
Score = 47.8 bits (112), Expect = 3e-05
Identities = 69/326 (21%), Positives = 123/326 (37%), Gaps = 49/326 (15%)
Query: 325 HGSLPQQTTLLDLMDALPSSGPAAQKAEPWGPSASTNQTNPWGGPAAPASTSDPWPSFGT 384
+G P TL + +A + A E GP + WG P+ + P P+ G
Sbjct: 439 NGHAPYSRTLSHISEASVDAALAEASVEAVGPESLA-----WG----PSPPTHPAPTHGE 489
Query: 385 KPAA---SIDPWGVPTGATVQ---SVPKNSDPWAASQQ----------PASSAGKR---A 425
P+ ++DP T +T+ SVP ++DP ++ P+ G
Sbjct: 490 HPSPVPPALDPGHSATSSTLGTTGSVPTSTDPAPSAHLDSVHKSTDSGPSELPGPTHTTT 549
Query: 426 SDAWGAVSTT----KPVSVSGSFELFSNLNGTIKDDFSEFDNLRTSKKTAESVTSLPSQN 481
+ A++TT P++ + + + T+ + + + T ++PS
Sbjct: 550 GSTYSAITTTHSAPSPLTHTTTGSTHKPIISTLTTTGPTLNIIGPVQTTTSPTHTMPSPT 609
Query: 482 NGTTSPDPFESQPLTVASSKPSSARKTPESFLGPNAALVNLDSLVTRPAPPAQS-----L 536
+ T SP + P +S +P + P + + L T P P S
Sbjct: 610 HTTASPTHTSTSPTHTPTSPTHKTSMSPPTTTSPTPSGMGLVQTATSPTHPTTSPTHPTT 669
Query: 537 NPFLAPGAPATSAPV----NPFQVNQPQPLTLNQLRGSPVLGTSTSFG-------PGPGV 585
+P L +P+TS + +P + + P + L SP + S + P P
Sbjct: 670 SPILINVSPSTSLELATLSSPSKHSDPTLPGTDSLPCSPPVSNSYTQADPMAPRTPHPSP 729
Query: 586 ESMAVASMTSAAPQPALGATGSSLTP 611
+ +TS AP P+ +T SL+P
Sbjct: 730 AHSSRKPLTSPAPDPS-ESTVQSLSP 754
>gi|91984781 ArfGAP with FG repeats 2 [Homo sapiens]
Length = 481
Score = 47.8 bits (112), Expect = 3e-05
Identities = 79/307 (25%), Positives = 106/307 (34%), Gaps = 68/307 (22%)
Query: 377 DPWPSFGTKPAASIDPWGVPTGATVQSVPKNSDPWAASQQPASSAGKRASDAWGAVSTTK 436
DP PS + S P QS + S + P SS K ++D +
Sbjct: 181 DPAPSLSVAASTSSQP-------VSQSHARTSQARSTQPPPHSSVKKASTDLLADIGGDP 233
Query: 437 PVS--VSGSFELFSNLNGTIKDD--FSEFDNLRTSKKTAESVTSLPSQNN---------- 482
+ ++ +F F G F+ FD +S ++ SLP
Sbjct: 234 FAAPQMAPAFAAFPAFGGQTPSQGGFANFDAF-SSGPSSSVFGSLPPAGQASFQAQPTPA 292
Query: 483 GTTSPDPFESQPLTVASSKPSSARKTPESFLGPNAALVNLDSLVTRPA---PPAQSL--- 536
G++ PF + PL AS S A SFLGP + S + A PP QS+
Sbjct: 293 GSSQGTPFGATPLAPASQPNSLA--DVGSFLGPGVPAAGVPSSLFGMAGQVPPLQSVTMG 350
Query: 537 ---------------NPFLAPGAPATSAPVNPFQVNQPQPLTLNQLRGSPVLGTSTSFGP 581
NPF AP A + NPFQ N P P G S S GP
Sbjct: 351 GGGGSSTGLAFGAFTNPFTAPAAQSPLPSTNPFQPNGLAP--------GPGFGMS-SAGP 401
Query: 582 GPGVESMAVASMTSAAPQPAL--------GATGSSLTPLGPAMMNMVGSVGIPPSAAQAT 633
G + S+ P P GSS LG A +G P + A
Sbjct: 402 GFPQAVPPTGAFASSFPAPLFPPQTPLVQQQNGSSFGDLGSA------KLGQRPLSQPAG 455
Query: 634 GTTNPFL 640
+TNPF+
Sbjct: 456 ISTNPFM 462
>gi|7662228 synaptosomal-associated protein, 91kDa homolog [Homo
sapiens]
Length = 907
Score = 47.4 bits (111), Expect = 4e-05
Identities = 78/335 (23%), Positives = 129/335 (38%), Gaps = 51/335 (15%)
Query: 336 DLMDALPSSGPAAQK--AEPWGPSASTNQTNPWGG--PAAP----ASTSDPWPSFGTKPA 387
D A P PAA + A P P+ + G P AP A + F KP
Sbjct: 442 DAFAASPGEAPAASEGAAAPATPTPVAAALDACSGNDPFAPSEGSAEAAPELDLFAMKPP 501
Query: 388 ASIDPWGVPTGATVQSVPKNSDPWAASQQPASSAGKRASDAWGAVSTTKPVSVSGSFELF 447
+ P PT +T VP A S PA +A A+ A A +TT + + +
Sbjct: 502 ETSVPVVTPTASTAPPVPAT----APSPAPAVAAAAAATTAATAAATTTTTTSAATATTA 557
Query: 448 SNLNGTIKDDFSEFDNLRTSKKTAESVTSLPSQNNGTTSPDPFESQPLTVAS------SK 501
D F + + K ++ S+ + S P + P+ +S S
Sbjct: 558 PPALDIFGDLFESTPEVAAAPKP-DAAPSIDLFSTDAFSSPPQGASPVPESSLTADLLSV 616
Query: 502 PSSARKTPESFLGP----NAALVNL-----DSLVTRPAPPAQSLNPFLAPG--------- 543
+ A +P + P ++ +++L S + P P +Q+ + A
Sbjct: 617 DAFAAPSPATTASPAKVDSSGVIDLFGDAFGSSASEPQPASQAASSSSASADLLAGFGGS 676
Query: 544 --APATSAPVNPFQVNQPQPLTLNQLRGSPVLGTSTSFGPG--PGVESMAVASMTSAA-- 597
AP+ S PV P Q N QP +P +S+SF P G+ + + +M A
Sbjct: 677 FMAPSPS-PVTPAQNNLLQPNFEAAFGTTPSTSSSSSFDPSVFDGLGDLLMPTMAPAGQP 735
Query: 598 -------PQPALGATGSSLTPLGPAMMNMVGSVGI 625
P PA+ A+ + + L ++ ++VG++GI
Sbjct: 736 APVSMVPPSPAMAASKALGSDLDSSLASLVGNLGI 770
Score = 43.9 bits (102), Expect = 5e-04
Identities = 73/316 (23%), Positives = 106/316 (33%), Gaps = 83/316 (26%)
Query: 341 LPSSGPAAQKAEPWGPSASTNQTNP------WGGPAAPASTSDP-------WPSFGT--- 384
L S PA P A T T+P A P STS P P F +
Sbjct: 302 LSKSSPATTVTSPNSTPAKTIDTSPPVDLFATASAAVPVSTSKPSSDLLDLQPDFSSGGA 361
Query: 385 ---------KPAASIDPWGVPTG----ATVQSVPKN---SDPWAASQQPASSAGKRASDA 428
PA WG G A + SVP SDP+A P ++ + A+ +
Sbjct: 362 AAAAAPAPPPPAGGATAWGDLLGEDSLAALSSVPSEAQISDPFAPEPTPPTTTAEIATAS 421
Query: 429 WGAVSTTKPVSVSGSFELFSNLNGTIKDDFSEFDNLRTSKKTAESVTSLPSQNNGTTSPD 488
A +TT +V+ +LF D F A S P+ + G +P
Sbjct: 422 ASASTTTTVTAVTAEVDLFG-------DAF------------AASPGEAPAASEGAAAP- 461
Query: 489 PFESQPLTVASSKPSSARKTP-ESFLGPNAALVNLDSLVTRPAPPAQSLNPFLAPGAPAT 547
+ P VA++ + + P G A LD +P P T
Sbjct: 462 ---ATPTPVAAALDACSGNDPFAPSEGSAEAAPELDLFAMKP---------------PET 503
Query: 548 SAPVNPFQVNQPQPLTLNQLRGSPVLGTSTSFGPGPGVESMAVASMTSAAPQPALGATGS 607
S PV +T PV T+ S P P V + A A+ + A T +
Sbjct: 504 SVPV----------VTPTASTAPPVPATAPS--PAPAVAAAAAATTAATAAATTTTTTSA 551
Query: 608 SLTPLGPAMMNMVGSV 623
+ P +++ G +
Sbjct: 552 ATATTAPPALDIFGDL 567
Score = 36.2 bits (82), Expect = 0.096
Identities = 65/316 (20%), Positives = 108/316 (34%), Gaps = 34/316 (10%)
Query: 340 ALPSSGPAAQKAEPWGPSASTNQTNPWGGPAAPASTSDPWPSFGTKPAASID----PWGV 395
A P+ P A A WG + + A SDP+ T P + +
Sbjct: 365 AAPAPPPPAGGATAWGDLLGEDSLAALSSVPSEAQISDPFAPEPTPPTTTAEIATASASA 424
Query: 396 PTGATVQSVPKNSDPWAASQQPASSAGKRASDAWGAVSTTKPVSVSGSFELFSNLNGTIK 455
T TV +V D + + A+S G+ + + GA + P V+ + + S
Sbjct: 425 STTTTVTAVTAEVDLFGDAF--AASPGEAPAASEGAAAPATPTPVAAALDACSG-----N 477
Query: 456 DDFSEFDNLRTSKKTAESVTSLPSQNN---GTTSPDPFESQPLTVASSKPSSARKTPESF 512
D F+ + + + P + + T + P T S P+ A +
Sbjct: 478 DPFAPSEGSAEAAPELDLFAMKPPETSVPVVTPTASTAPPVPATAPSPAPAVAAAAAATT 537
Query: 513 LGPNAA--LVNLDSLVTRPAPPAQSLNPFLAPGAPATSAPVNPFQVNQPQPLTLNQLRGS 570
AA + APPA + L P +A P + +
Sbjct: 538 AATAAATTTTTTSAATATTAPPALDIFGDLFESTPEVAAAPKPDAAPSIDLFSTDAFSSP 597
Query: 571 PVLGTSTSFGPGPGVESMAVASMTS----AAPQPALGATGSSLTPLGPAMMNMVG----- 621
P G P ES A + S AAP PA A+ + + G ++++ G
Sbjct: 598 PQ-------GASPVPESSLTADLLSVDAFAAPSPATTASPAKVDSSG--VIDLFGDAFGS 648
Query: 622 SVGIPPSAAQATGTTN 637
S P A+QA +++
Sbjct: 649 SASEPQPASQAASSSS 664
>gi|149773456 hypothetical protein LOC643314 [Homo sapiens]
Length = 1427
Score = 47.4 bits (111), Expect = 4e-05
Identities = 57/221 (25%), Positives = 91/221 (41%), Gaps = 22/221 (9%)
Query: 342 PSSGPAAQKA--EPWGPSASTNQTNPWGGPAAPASTSDPWPSFGTKPAASIDPWGVPTGA 399
P+S AA EP P+A+ PAA T + P+F PA
Sbjct: 1104 PTSPAAAVPTPEEPASPAAAVPTPEEPASPAAAVPTPEE-PAFPA-PAVPTPEESASAAV 1161
Query: 400 TVQSVPKNSDPWAASQQPASSAGKRASDAWGAVSTTKPVSVSGSFELFSNLNGTIKDDFS 459
V + +++ P AA PA SA A A + +P S + S + + T+++ S
Sbjct: 1162 AVPTPEESASPAAAVPTPAESASFAAVVA----TLEEPTSPAASVPTPAAMVATLEEFTS 1217
Query: 460 EFDNLRTSKKTAE--SVTSLPSQNNGTTSPDPFESQPLTVAS--------SKPSSARKTP 509
++ TS++ A + S P + + P +P + A+ S P+++ TP
Sbjct: 1218 PAASVPTSEEPASLAAAVSNPEEPTSPAAAVPTLEEPTSSAAAVLTPEELSSPAASVPTP 1277
Query: 510 ESFLGPNAALVNLDSLVTRPAPPAQSLNPFLAPGAPATSAP 550
E P AA+ NL+ PA PA ++ PA S P
Sbjct: 1278 EEPASPAAAVSNLE----EPASPAAAVPTPEVAAIPAASVP 1314
Score = 37.7 bits (86), Expect = 0.033
Identities = 75/331 (22%), Positives = 117/331 (35%), Gaps = 39/331 (11%)
Query: 317 VKIPKKKEHGSLPQQTTLLDLMDALPSSGPAAQKA----EPWGPSASTNQTNPWGGPAAP 372
+ +P +E G+ T + A AA + EP P+A+ PAA
Sbjct: 960 ITVPITEEDGTPEGPVTPATTVHAPEEPDTAAVRVSTPEEPASPAAAVPTPEEPTSPAAA 1019
Query: 373 ASTSDPWPSFGTKPAASIDPWGVPT--GATVQSVPKNSDPWAASQQPASSAGKRASDAWG 430
P P T PAA++ P PT A V + + + P AA P + S A
Sbjct: 1020 V----PTPEEPTSPAAAVPPPEEPTSPAAAVPTPEEPTSPAAAVPTPE----EPTSPAAA 1071
Query: 431 AVSTTKPVSVSGSFELFSNLNGTIKDDFSEFDNLRTSKKTAESVTSLPSQNNGTTSPDPF 490
+ +P S + + T ++ S + T ++ ++P+ + P
Sbjct: 1072 VPTPEEPTSPAAAVP-------TPEEPTSPAAAVPTPEEPTSPAAAVPTPEEPAS---PA 1121
Query: 491 ESQPLTVASSKPSSARKTPESFLGPNAALVNLD---SLVTRPAPPAQSLNPFLAPGAPAT 547
+ P + P++A TPE P A+ + S P +S +P A PA
Sbjct: 1122 AAVPTPEEPASPAAAVPTPEEPAFPAPAVPTPEESASAAVAVPTPEESASPAAAVPTPAE 1181
Query: 548 SAPVNPFQVNQPQPLTLNQLRGSPVLGTSTSFGPGPGVE---SMAVASMTSAAPQPALGA 604
SA +P SP T +E S A + TS P A
Sbjct: 1182 SASFAAVVATLEEPT-------SPAASVPTPAAMVATLEEFTSPAASVPTSEEPASLAAA 1234
Query: 605 TGSSLTPLGPAMMNMVGSVGIPPSAAQATGT 635
+ P PA V ++ P S+A A T
Sbjct: 1235 VSNPEEPTSPAA--AVPTLEEPTSSAAAVLT 1263
>gi|38261962 activating transcription factor 7 interacting protein
[Homo sapiens]
Length = 1270
Score = 47.0 bits (110), Expect = 5e-05
Identities = 68/283 (24%), Positives = 101/283 (35%), Gaps = 21/283 (7%)
Query: 356 PSASTNQTNPWGGPAAPAST------SDPWPSFGTKPAASIDPWGVPTGATVQSVPKNSD 409
P+ S NP P+ P T S P PS P AS P G T VQ+VP
Sbjct: 823 PTVSGLTKNPVSLPSLPNPTKPNNVPSVPSPSIQRNPTASAAPLG--TTLAVQAVPTAHS 880
Query: 410 PWAASQQPASSAGKRA----SDAWGAVSTTKPVSV---SGSFELFSNLNGTIKDDFSEFD 462
A++ + G S G + P+S S + E SN I++ ++
Sbjct: 881 IVQATRTSLPTVGPSGLYSPSTNRGPIQMKIPISAFSTSSAAEQNSNTTPRIENQTNKTI 940
Query: 463 NLRTSKKTAESVTSLPSQNNGTTSPDPFESQPLTVASSKPSSARKTPESFLGPNAALVNL 522
+ SKK A+S SQ T D LT+ + S A + P+ + ++
Sbjct: 941 DASVSKKAADST----SQCGKATGSDSSGVIDLTM-DDEESGASQDPKKLNHTPVSTMSS 995
Query: 523 DSLVTRPAPPAQSLNPFLAPGAPATSAPVNPFQVNQPQPLTLNQLRGSPVLGTSTSFGPG 582
V+RP P Q P G P + + P T+N + PV +T
Sbjct: 996 SQPVSRPLQPIQPAPPLQPSGVPTSGPSQTTIHLLPTAPTTVN-VTHRPVTQVTTRLPVP 1054
Query: 583 PGVESMAVASMTSAAPQPALGATGSSLTPLGPAMMNMVGSVGI 625
+ V T AP G+ + +N SV +
Sbjct: 1055 RAPANHQVVYTTLPAPPAQAPLRGTVMQAPAVRQVNPQNSVTV 1097
>gi|206597509 HIV-1 Rev binding protein isoform 4 [Homo sapiens]
Length = 522
Score = 45.4 bits (106), Expect = 2e-04
Identities = 66/265 (24%), Positives = 99/265 (37%), Gaps = 44/265 (16%)
Query: 414 SQQPASSAGKRASDAWGAVSTTKPVSVSGSFELFSNLNGTIKDDFSEFDNLRTSKKTAES 473
S Q AS+ K +++ G + K +++ +FS G D S F T K S
Sbjct: 264 SHQTASAVSKVSTNKAGLQTADKYAALANLDNIFSAGQGG--DQGSGFGT--TGKAPVGS 319
Query: 474 VTSLPSQNNGTTSP-------DPFESQPLTVASSKPSSARKTPESF----LGPNAALVNL 522
V S+PSQ++ ++ D S T +++ S++ + F + +A
Sbjct: 320 VVSVPSQSSASSDKYAALAELDSVFSSAATSSNAYTSTSNASSNVFGTVPVVASAQTQPA 379
Query: 523 DSLVTRPAPPAQSLNPFLAPGAPATSAPVNPFQVNQPQPLTLNQLRGSPVLGTSTSFG-P 581
S V P S NPF+A P+ ++ NPFQ N G+ + T FG P
Sbjct: 380 SSSVPAPFGATPSTNPFVAAAGPSVASSTNPFQTNARGATAAT--FGTASMSMPTGFGTP 437
Query: 582 GP---------------GVESMAVASMTSAAPQP------ALGATGSSLTPLGPAMMNMV 620
P A T+ + QP A G T +TP G V
Sbjct: 438 APYSLPTSFSGSFQQPAFPAQAAFPQQTAFSQQPNGAGFAAFGQTKPVVTPFGQVAAAGV 497
Query: 621 GS----VGIPPSA-AQATGTTNPFL 640
S G P + +TNPFL
Sbjct: 498 SSNPFMTGAPTGQFPTGSSSTNPFL 522
>gi|154146199 sal-like 3 [Homo sapiens]
Length = 1300
Score = 44.7 bits (104), Expect = 3e-04
Identities = 74/306 (24%), Positives = 116/306 (37%), Gaps = 47/306 (15%)
Query: 346 PAAQKAEPWGPSASTNQTNPWGGPAAPASTSDPWPSFGTKPAASIDPWGVPTGATVQSVP 405
P ++AEP + + P PAAPA P P++G T T++++
Sbjct: 126 PVEKEAEPMDAEPAGDTRAPRPPPAAPAP---PTPAYGAPS----------TNVTLEALL 172
Query: 406 KNSDPWAASQQPASSAGKRASDAWGAVSTTKPVSVSGSFELFSNLNGTIKDDFSEFDNLR 465
A Q A +AG S A G V+ +V E L + +R
Sbjct: 173 STKVAVAQFSQGARAAG--GSGAGGGVAAA---AVPLILEQLMALQQQQIHQLQLIEQIR 227
Query: 466 TSKKTAESVTSLPSQNNGT--TSPDPFESQ-------PLTV---ASSKPSSARKTPESFL 513
+ + PS + ++P P SQ PL+ A++ S P +F
Sbjct: 228 SQVALMQRPPPRPSLSPAAAPSAPGPAPSQLPGLAALPLSAGAPAAAIAGSGPAAPAAFE 287
Query: 514 GPNAALVNLDSLVTRPAPPAQSLNPFLAPGAPATSAPVNPFQVNQPQPLTLNQLRGS--- 570
G L +S + P PA+ P APA +AP PQ +Q + +
Sbjct: 288 GAQP-LSRPESGASTPGGPAEPSAPAAPSAAPAPAAPA---PAPAPQSAASSQPQSASTP 343
Query: 571 PVLGTSTSFGPGPGVESMAVASMTSAA------PQPALGATGSSLTPLGPAMMNMVGSVG 624
P L + G PG+ S + TSA+ P ++ AT ++L PL M + G
Sbjct: 344 PALAPGSLLGAAPGLPS-PLLPQTSASGVIFPNPLVSIAATANALDPLSALMKHRKGK-- 400
Query: 625 IPPSAA 630
PP+ +
Sbjct: 401 -PPNVS 405
Score = 30.4 bits (67), Expect = 5.2
Identities = 43/185 (23%), Positives = 65/185 (35%), Gaps = 21/185 (11%)
Query: 465 RTSKKTAESVTSLPSQNNGTTSPDPFESQPLTVASSKPSSARKTPESFLGPNAALVNLDS 524
R +K AE + + P+ + P P P T A PS+ T E+ L A+ S
Sbjct: 125 RPVEKEAEPMDAEPAGDTRAPRPPPAAPAPPTPAYGAPST-NVTLEALLSTKVAVAQF-S 182
Query: 525 LVTRPAPPAQSLNPFLAPGAPATSAPVNPFQVNQPQPLTL-NQLRGSPVL---------- 573
R A + + A P + Q Q L L Q+R L
Sbjct: 183 QGARAAGGSGAGGGVAAAAVPLILEQLMALQQQQIHQLQLIEQIRSQVALMQRPPPRPSL 242
Query: 574 ---GTSTSFGPGPG-VESMAVASMTSAAPQPALGATGSSLTPLGPAMMNMVGSVGIPPSA 629
++ GP P + +A +++ AP A+ +G P PA + P S
Sbjct: 243 SPAAAPSAPGPAPSQLPGLAALPLSAGAPAAAIAGSG----PAAPAAFEGAQPLSRPESG 298
Query: 630 AQATG 634
A G
Sbjct: 299 ASTPG 303
Score = 30.0 bits (66), Expect = 6.8
Identities = 33/110 (30%), Positives = 42/110 (38%), Gaps = 23/110 (20%)
Query: 340 ALPSSGPAAQKAEPWGPSASTNQTNPWGGPAAPASTSDPWPSFGTKPAASIDPWGVPTGA 399
A P S P + + P GP+ P+APA+ PS PAA P A
Sbjct: 289 AQPLSRPESGASTPGGPAE----------PSAPAA-----PSAAPAPAA-------PAPA 326
Query: 400 TVQSVPKNSDPWAASQQPASSAGKRASDAWGAVSTTKPVSVSGSFELFSN 449
+S P +AS PA + G A G S P S S +F N
Sbjct: 327 PAPQSAASSQPQSASTPPALAPGSLLGAAPGLPSPLLP-QTSASGVIFPN 375
>gi|222418647 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 43.5 bits (101), Expect = 6e-04
Identities = 60/253 (23%), Positives = 92/253 (36%), Gaps = 34/253 (13%)
Query: 405 PKNSDPWAASQQPASSAGKRASDAWGA-VSTTKPVSV---SGSFELFSNLNGTIKDD--- 457
P N + QP K +S V+TT+ SV S S ++ + N T
Sbjct: 78 PNNPPKFPNPHQPPKHPDKNSSVVNPTLVATTQIPSVTFPSASTKITTLPNVTFLPQNAT 137
Query: 458 -FSEFDNLRTSKKTA----------ESVTSLPSQNNGTTSPDPFESQPLTVASSKPSSAR 506
S +N+ TS A + T+ P + TT P S P ++ P+ +
Sbjct: 138 TISSRENVNTSSSVATLAPVNSPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSA 197
Query: 507 KT---PESFLGPNAALVNLDSLVTRPAPPAQSLNPFLAPGAPATSAPVNPFQVNQPQPLT 563
T P S P T PAPP+ S P T+AP P P PL+
Sbjct: 198 TTQAPPSSSAPPETTAAPPTPPATTPAPPSSSAPP------ETTAAPPTP-SATTPAPLS 250
Query: 564 LNQLRGSPVLGTSTSFGPGPGVESMAVASMTSAAPQPALGATGSSLTPLGPAMMNMVGSV 623
S +T+ P P ++ +S ++ A T S+ TP P+ +
Sbjct: 251 ------SSAPPETTAVPPTPSATTLDPSSASAPPETTAAPPTPSATTPAPPSSPAPQETT 304
Query: 624 GIPPSAAQATGTT 636
P + ++ TT
Sbjct: 305 AAPITTPNSSPTT 317
Score = 37.7 bits (86), Expect = 0.033
Identities = 55/226 (24%), Positives = 82/226 (36%), Gaps = 40/226 (17%)
Query: 328 LPQQTTLLDLMDALPSSGPAAQKAEPWGPSASTNQTNPWGGPAAPASTSDPWPSFGTKPA 387
LPQ T + + + +S A A P S + P P++T+ PS P
Sbjct: 132 LPQNATTISSRENVNTSSSVATLA----PVNSPAPQDTTAAPPTPSATTPAPPSSSAPPE 187
Query: 388 ASIDPWGVPT-GATVQSVPKNSDPWAASQQPASSAGKRASDAWGAVSTTKPVSVSGSFEL 446
+ P PT AT Q+ P +S P P ++A A +T P S S E
Sbjct: 188 TTAAP---PTPSATTQAPPSSSAP------PETTAAPPTPPA----TTPAPPSSSAPPET 234
Query: 447 FSNLNGTIKDDFSEFDNLRTSKKTAESVTSLPSQNNGTTSPDPFESQPLTVASS-KPSSA 505
T+ S T+ P+ + + P+ P A++ PSSA
Sbjct: 235 -------------------TAAPPTPSATT-PAPLSSSAPPETTAVPPTPSATTLDPSSA 274
Query: 506 RKTPESFLGPNAALVNLDSLVTRPAPPAQSLNPFLAP-GAPATSAP 550
PE+ P + + PAP + P P +P T AP
Sbjct: 275 SAPPETTAAPPTPSATTPAPPSSPAPQETTAAPITTPNSSPTTLAP 320
Score = 34.3 bits (77), Expect = 0.36
Identities = 50/228 (21%), Positives = 79/228 (34%), Gaps = 17/228 (7%)
Query: 342 PSSGPAAQKAEPWGPSASTNQTNPWGGPAAPASTSDP---WPSFGTKPAASIDPWGVPTG 398
PS + P P ++ + P A+T P +PS TK + +P
Sbjct: 76 PSPNNPPKFPNPHQPPKHPDKNSSVVNPTLVATTQIPSVTFPSASTKITTLPNVTFLPQN 135
Query: 399 ATVQSVPKN--SDPWAASQQPASSAGKR---ASDAWGAVSTTKPVSVSGSFELFSNLNGT 453
AT S +N + A+ P +S + A+ + +T P S S E +
Sbjct: 136 ATTISSRENVNTSSSVATLAPVNSPAPQDTTAAPPTPSATTPAPPSSSAPPETTA----- 190
Query: 454 IKDDFSEFDNLRTSKKTAESVTSLPSQNNGTTSPDPFESQPLTVASSKPSSARKTPESFL 513
S S T+ P TT P S P ++ P+ + TP
Sbjct: 191 APPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTAAPPTPSATTP---- 246
Query: 514 GPNAALVNLDSLVTRPAPPAQSLNPFLAPGAPATSAPVNPFQVNQPQP 561
P ++ ++ P P A +L+P A P T+A P P
Sbjct: 247 APLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAPPTPSATTPAP 294
>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 673
Score = 43.5 bits (101), Expect = 6e-04
Identities = 88/430 (20%), Positives = 145/430 (33%), Gaps = 53/430 (12%)
Query: 210 TGAPLGQSEELQPLSQRHPFLPHLGLASR------PNGDWSQPCLT-CDRAARATSPRVS 262
TG P S P +P L R P G S+ LT D A T
Sbjct: 221 TGTPPRASPTGSPPRASLSMMPSTALLIRTPPRASPTGMLSRTSLTKMDSTASITRT--- 277
Query: 263 SELEQARPQTSGEEELQLQLALAMSREVAEQEERLRRGDDLRLQMALEESRRD-TVKIPK 321
+RP T+ + +L+M+ A L R + ++ D T I +
Sbjct: 278 ----PSRPSTASPTGTPSRASLSMTPSTASLMRMLPRASPTGMLSRTSLTKMDSTASISR 333
Query: 322 KKEHGSLPQQTTLLDLMDALPSSGPAAQKAEPWGPSASTNQTNPWGGPAAPAST--SDPW 379
S+ + PS K P+ + ++ +P G P+ + T S
Sbjct: 334 TPPRASITRT----------PSRASPTGKPSTASPTGTPSRASPTGSPSTASLTGLSSTA 383
Query: 380 PSFGTKPAASIDPWGVPTGATVQSVPKNSDPWAASQQPASSAGKRASDAWGAVSTTKPVS 439
GT P AS P G P+ A++ P + P S D+ + + T P +
Sbjct: 384 SPTGTPPRAS--PTGTPSTASLTRKPPRASPTGM----LSRTSITKMDSTASPTRTPPRA 437
Query: 440 VSGSFELFSNLNGTIKDDFSEFDNLRTSKKTAESVTSLPSQNNGTTSPDPFESQPLTVAS 499
++ GT + T T+ P+ + T SP S S
Sbjct: 438 SPTGTPPRASPTGTPS----------RASPTGTQSTASPTGSPSTASPTGSPSTASPTGS 487
Query: 500 SKPSSARKTPESFLGPNAALVNLDSLVTRPAPPAQSLNPFLAPGAPATSAPVNPFQVNQP 559
+S +TP A+L ++S + P+++ + A T +P + P
Sbjct: 488 PSRASLTRTPS-----RASLTKMESTASITRTPSRASPTWTPSTASPTGSPSTALAMGSP 542
Query: 560 QPLTLNQLRGSPVLGTSTSFGPGPGVESMAVASMTSAAPQPALGATGSSLTPLGPAMMNM 619
L + +P + T + + + AS+T L S +P G M +
Sbjct: 543 SRAALTR---TPSRASLTRTPSRASLTTPSRASLTRTPSTVLLTRMPPSASPTG--MPSR 597
Query: 620 VGSVGIPPSA 629
G+P SA
Sbjct: 598 TSPTGMPSSA 607
Score = 35.8 bits (81), Expect = 0.12
Identities = 71/338 (21%), Positives = 122/338 (36%), Gaps = 37/338 (10%)
Query: 304 RLQMALEESRRDTVKIPKKKEHGSLPQQTTLLDLMDALPSSGPAAQKAEPWGPSASTNQT 363
R +++ S + +P + P + +L PS+ + P+ ++T
Sbjct: 136 RASLSMTPSTAAALTMPSRASLTRTPPRASLT----MTPSTASLTRTPPRASPTGMPSRT 191
Query: 364 NPWGGPAAPASTSDPWPSFGTKPAASIDPWGVPTGATVQSVPKNSDPWAASQQPASSAGK 423
+P G P+ + T + T+ + P G P A+ P S P A+ S+A
Sbjct: 192 SPTGMPSTASLTKMDSTASITRTLSRASPTGTPPRAS----PTGSPPRASLSMMPSTA-- 245
Query: 424 RASDAWGAVSTTKPVSVSGSFELFSNLNGTIKDDFSEFDNLRTSKKTAESVTSLPSQNNG 483
+ T S +G + S + T D + + TA S T PS+ +
Sbjct: 246 ------LLIRTPPRASPTG---MLSRTSLTKMDSTASITRTPSRPSTA-SPTGTPSRASL 295
Query: 484 TTSPDPFESQPLTVASSKPSSARKTPESFLGPNAALVNLDSLVT-RPAPPAQSL--NPFL 540
+ +P + AS R +P L +L +DS + PP S+ P
Sbjct: 296 SMTP--------STASLMRMLPRASPTGMLS-RTSLTKMDSTASISRTPPRASITRTPSR 346
Query: 541 A--PGAPATSAPV-NPFQVNQPQPLTLNQLRGSPVLGTSTSFGPGPGVESMAVASMTSAA 597
A G P+T++P P + + + L G + T++ G P S S
Sbjct: 347 ASPTGKPSTASPTGTPSRASPTGSPSTASLTG--LSSTASPTGTPPRASPTGTPSTASLT 404
Query: 598 PQPALGATGSSLTPLGPAMMNMVGSVGIPPSAAQATGT 635
+P + L+ M+ S P A TGT
Sbjct: 405 RKPPRASPTGMLSRTSITKMDSTASPTRTPPRASPTGT 442
Score = 33.9 bits (76), Expect = 0.47
Identities = 66/337 (19%), Positives = 116/337 (34%), Gaps = 55/337 (16%)
Query: 320 PKKKEHGSLPQQTTLLDLMDALPSSGPAAQKAEPWGPSASTNQTNPWGGPAAPASTSDPW 379
P+ GS P+ + + AL P +A P G + T+ T + + S P
Sbjct: 225 PRASPTGSPPRASLSMMPSTALLIRTPP--RASPTGMLSRTSLTKMDSTASITRTPSRP- 281
Query: 380 PSFGTKPAASIDPWGVPTGATVQSVPKNSD-----PWAASQQPASSAGKRASDAWGAVST 434
++ P G P+ A++ P + P A+ S D+ ++S
Sbjct: 282 --------STASPTGTPSRASLSMTPSTASLMRMLPRASPTGMLSRTSLTKMDSTASISR 333
Query: 435 TKP-VSVSGSFELFSNLNGTIKDDFSEFDNLRTSKKTAESVTSLPSQNNGTTSPD----- 488
T P S++ + S T K + S T PS+ + T SP
Sbjct: 334 TPPRASITRTPSRASP----------------TGKPSTASPTGTPSRASPTGSPSTASLT 377
Query: 489 -------PFESQPLTVASSKPSSARKTPESFLGPNAALVNLDSLVTRPAPPAQSLNPFLA 541
P + P + PS+A T + +++ S+ + + + P
Sbjct: 378 GLSSTASPTGTPPRASPTGTPSTASLTRKPPRASPTGMLSRTSITKMDSTASPTRTP--- 434
Query: 542 PGAPATSAPVNPFQVNQPQPLTLNQLRGSPVLGTSTSFGPGPGVESMAVASMTSAAPQPA 601
P A T P P R SP ST+ G + S ++A+P +
Sbjct: 435 PRASPTGTPPRASPTGTPS-------RASPTGTQSTASPTGSPSTASPTGSPSTASPTGS 487
Query: 602 LGATGSSLTPLGPAMMNMVGSVGIPPSAAQATGTTNP 638
+ TP ++ M + I + ++A+ T P
Sbjct: 488 PSRASLTRTPSRASLTKMESTASITRTPSRASPTWTP 524
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.125 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,889,163
Number of Sequences: 37866
Number of extensions: 1492665
Number of successful extensions: 8720
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 581
Number of HSP's that attempted gapping in prelim test: 7189
Number of HSP's gapped (non-prelim): 1771
length of query: 641
length of database: 18,247,518
effective HSP length: 109
effective length of query: 532
effective length of database: 14,120,124
effective search space: 7511905968
effective search space used: 7511905968
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.