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Search of human proteins with 110349769
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|110349769 coiled-coil domain containing 28B [Homo sapiens]
(200 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|110349769 coiled-coil domain containing 28B [Homo sapiens] 404 e-113
gi|27414491 coiled-coil domain containing 28A [Homo sapiens] 172 2e-43
gi|31542760 hypothetical protein LOC220108 [Homo sapiens] 35 0.033
gi|5453994 RAD21 homolog [Homo sapiens] 34 0.095
gi|58331272 zinc finger, CCHC domain containing 6 [Homo sapiens] 33 0.16
gi|55770832 cerebellar degeneration-related protein 2 [Homo sapi... 33 0.21
gi|24415404 MDN1, midasin homolog [Homo sapiens] 33 0.21
gi|45505178 cancer antigen 1 [Homo sapiens] 32 0.28
gi|54633315 deoxynucleotidyltransferase, terminal, interacting p... 32 0.36
gi|93102375 hypothetical protein LOC10827 [Homo sapiens] 32 0.36
gi|148763345 cell division cycle 2-like 2 isoform 4 [Homo sapiens] 32 0.47
gi|148763347 cell division cycle 2-like 2 isoform 1 [Homo sapiens] 32 0.47
gi|16332372 cell division cycle 2-like 1 (PITSLRE proteins) isof... 32 0.47
gi|16332370 cell division cycle 2-like 1 (PITSLRE proteins) isof... 32 0.47
gi|16332364 cell division cycle 2-like 1 (PITSLRE proteins) isof... 32 0.47
gi|16332362 cell division cycle 2-like 1 (PITSLRE proteins) isof... 32 0.47
gi|16332360 cell division cycle 2-like 1 (PITSLRE proteins) isof... 32 0.47
gi|16332358 cell division cycle 2-like 1 (PITSLRE proteins) isof... 32 0.47
gi|50727002 pseudouridylate synthase 7 homolog [Homo sapiens] 32 0.47
gi|38372933 chromatin modifying protein 2A [Homo sapiens] 31 0.61
gi|7656922 chromatin modifying protein 2A [Homo sapiens] 31 0.61
gi|15812178 zinc finger protein 36, C3H type-like 2 [Homo sapiens] 31 0.61
gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens] 31 0.61
gi|46852174 kinesin family member 3A [Homo sapiens] 31 0.80
gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens] 31 0.80
gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens] 31 0.80
gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens] 31 0.80
gi|27597085 tropomyosin 1 alpha chain isoform 5 [Homo sapiens] 31 0.80
gi|118572606 hemicentin 1 [Homo sapiens] 31 0.80
gi|98986461 neurogenic differentiation 2 [Homo sapiens] 31 0.80
>gi|110349769 coiled-coil domain containing 28B [Homo sapiens]
Length = 200
Score = 404 bits (1039), Expect = e-113
Identities = 200/200 (100%), Positives = 200/200 (100%)
Query: 1 MDDKKKKRSPKPCLAQPAQAPGTLRRVPVPTSHSGSLALGLPHLPSPKQRAKFKRVGKEK 60
MDDKKKKRSPKPCLAQPAQAPGTLRRVPVPTSHSGSLALGLPHLPSPKQRAKFKRVGKEK
Sbjct: 1 MDDKKKKRSPKPCLAQPAQAPGTLRRVPVPTSHSGSLALGLPHLPSPKQRAKFKRVGKEK 60
Query: 61 CRPVLAGGGSGSAGTPLQHSFLTEVTDVYEMEGGLLNLLNDFHSGRLQAFGKECSFEQLE 120
CRPVLAGGGSGSAGTPLQHSFLTEVTDVYEMEGGLLNLLNDFHSGRLQAFGKECSFEQLE
Sbjct: 61 CRPVLAGGGSGSAGTPLQHSFLTEVTDVYEMEGGLLNLLNDFHSGRLQAFGKECSFEQLE 120
Query: 121 HVREMQEKLARLHFSLDVCGEEEDDEEEEDGVTEGLPEEQKKTMADRNLDQLLSNLEDLS 180
HVREMQEKLARLHFSLDVCGEEEDDEEEEDGVTEGLPEEQKKTMADRNLDQLLSNLEDLS
Sbjct: 121 HVREMQEKLARLHFSLDVCGEEEDDEEEEDGVTEGLPEEQKKTMADRNLDQLLSNLEDLS 180
Query: 181 NSIQKLHLAENAEPEEQSAA 200
NSIQKLHLAENAEPEEQSAA
Sbjct: 181 NSIQKLHLAENAEPEEQSAA 200
>gi|27414491 coiled-coil domain containing 28A [Homo sapiens]
Length = 274
Score = 172 bits (436), Expect = 2e-43
Identities = 104/202 (51%), Positives = 134/202 (66%), Gaps = 20/202 (9%)
Query: 1 MDDKK-KKRSPKPCLAQPAQAPGTLRR-VPVPTSHSGSLALGLPHLPSPKQRAKFKRVGK 58
M+++K K+RSPK A Q + +PV S S P S QR K KRV K
Sbjct: 91 MEERKVKRRSPKSFSAHCTQVVNAKKNAIPV----SKSTGFSNPASQSTSQRPKLKRVMK 146
Query: 59 EKCRPVLAGGGSGSAGTPLQHSFLTEVTDVYEMEGGLLNLLNDFHSGRLQAFGKECSFEQ 118
EK +P G G G+ TP+QHSFLT+V+DV EME GLL+LLNDFHSG+LQAFG ECS EQ
Sbjct: 147 EKTKPQ-GGEGKGAQSTPIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQAFGNECSIEQ 205
Query: 119 LEHVREMQEKLARLHFSLDVCGEEEDDEEEEDGVTEGLPEEQKKTMADRNLDQLLSNLED 178
+EHVR MQEKLARL +L++ GE E+ LPE+++KT +D NLD+LLS+LE+
Sbjct: 206 MEHVRGMQEKLARL--NLELYGELEE-----------LPEDKRKTASDSNLDRLLSDLEE 252
Query: 179 LSNSIQKLHLAENAEPEEQSAA 200
L++SIQKLHLA+ + SA+
Sbjct: 253 LNSSIQKLHLADAQDVPNTSAS 274
>gi|31542760 hypothetical protein LOC220108 [Homo sapiens]
Length = 582
Score = 35.4 bits (80), Expect = 0.033
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 3 DKKKKRSPKPCLAQPAQAPGTLRRVPVPTSHSGSLALGLP 42
+KK+ +P P A P+ PG+ ++ P+ + H G + GLP
Sbjct: 333 EKKRHSTPLPSTAVPSHTPGSSQQSPLNSPHPGPIRTGLP 372
>gi|5453994 RAD21 homolog [Homo sapiens]
Length = 631
Score = 33.9 bits (76), Expect = 0.095
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 141 EEEDDEEEEDGVTEGLPEEQKKTMADRNLDQLLSNLEDL-----SNSIQKLHLAENAEPE 195
E+EDDEEEED G ++Q++ ++ Q+L L+ + SI L L N +
Sbjct: 532 EKEDDEEEEDEDASGGDQDQEERRWNKRTQQMLHGLQRALAKTGAESISLLELCRNTNRK 591
Query: 196 EQSA 199
+ +A
Sbjct: 592 QAAA 595
>gi|58331272 zinc finger, CCHC domain containing 6 [Homo sapiens]
Length = 1495
Score = 33.1 bits (74), Expect = 0.16
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 117 EQLEHVREMQEKLARLHFSLDVCGEEED----DEEEEDGVTEGLPEEQKKTMADRNLDQL 172
E E E+++ L HF+ V G+ + DEEEED E EE + T+ R +
Sbjct: 815 ESTEGTEELEDSLN--HFTHSVQGQTSEMIPSDEEEEDDEEEEEEEEPRLTINQREDEDG 872
Query: 173 LSNLEDLSNS 182
++N ++L N+
Sbjct: 873 MANEDELDNT 882
>gi|55770832 cerebellar degeneration-related protein 2 [Homo
sapiens]
Length = 454
Score = 32.7 bits (73), Expect = 0.21
Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 117 EQLEHVREMQEKLARLHFSLDVCGEEEDDEEEEDGVTEGLPEEQKKTMADRNLDQLLSNL 176
+Q+E +R+M E+ A+++ LDV E +E + V + +QK ++ L +N+
Sbjct: 68 KQVELLRQMNEQHAKVYEQLDVTAREL-EETNQKLVADSKASQQKILSLTETIECLQTNI 126
Query: 177 EDLSNSIQKL 186
+ L + +++L
Sbjct: 127 DHLQSQVEEL 136
>gi|24415404 MDN1, midasin homolog [Homo sapiens]
Length = 5596
Score = 32.7 bits (73), Expect = 0.21
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 141 EEEDDEEEEDGVTE----GLPEEQKKTMA-DRNLDQLLSNLEDLSNSIQKLHLAENAEPE 195
+EE+DEEEED TE G+ EE + +A D NLD SN + + K E AE +
Sbjct: 4783 DEEEDEEEEDNKTEETGPGMDEEDSELVAKDDNLDSGNSNKD--KSQQDKKEEKEEAEAD 4840
Query: 196 E 196
+
Sbjct: 4841 D 4841
>gi|45505178 cancer antigen 1 [Homo sapiens]
Length = 641
Score = 32.3 bits (72), Expect = 0.28
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 10/86 (11%)
Query: 113 ECSFEQLE-HVREMQEKLARLHFSLDVCGEEEDDEEEEDGVTEGLPEEQKKTMADRN-LD 170
+CS LE V+E+Q K+ + +DV + +++ EE L E++ K + ++N
Sbjct: 191 QCSNLYLEKRVKELQMKITKQQVFIDVINKLKENVEE-------LIEDKYKIILEKNDTK 243
Query: 171 QLLSNLEDLSNSIQKLHLAENAEPEE 196
+ L NLE++ + QK HL E+ +E
Sbjct: 244 KTLQNLEEVLANTQK-HLQESRNDKE 268
>gi|54633315 deoxynucleotidyltransferase, terminal, interacting
protein 2 [Homo sapiens]
Length = 756
Score = 32.0 bits (71), Expect = 0.36
Identities = 42/195 (21%), Positives = 86/195 (44%), Gaps = 13/195 (6%)
Query: 7 KRSPKPCLAQPAQAPGTLRRVPVPTSHSGSLALGLPHLPSPKQRAKFKRVGKEKCRPVLA 66
+RS L P+Q T TS S G+ + + K K ++K ++
Sbjct: 164 RRSKAKSLTDPSQESHTEAISDAETSSSDISFSGIATRRTRSMQRKLKAQTEKKDSKIVP 223
Query: 67 GGGSGSAGTPLQHSFLTEVTDVYEMEGGLLNLLN--DFHSGRLQAFGKECSFEQLEHVRE 124
G GTP+ +S ++ ++ L+ +N +F++ F + S E++
Sbjct: 224 GNEKQIVGTPV-NSEDSDTRQTSHLQARSLSEINKPNFYN---NDFDDDFSHRSSENILT 279
Query: 125 MQEKLARLHFSLDVCGEEEDDEEEEDGVTEGLPEEQKKTMADRNLDQLLSNLEDLSNSIQ 184
+ E+ A + + +D +E+ +G+T+ E +K+ +N LS L+D S+Q
Sbjct: 280 VHEQ-ANVESLKETKQNCKDLDEDANGITDEGKEINEKSSQLKN----LSELQD--TSLQ 332
Query: 185 KLHLAENAEPEEQSA 199
+L ++ P+ ++A
Sbjct: 333 QLVSQRHSTPQNKNA 347
>gi|93102375 hypothetical protein LOC10827 [Homo sapiens]
Length = 505
Score = 32.0 bits (71), Expect = 0.36
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 96 LNLLNDFHSGRLQAFGKECSFEQLEHVREMQEKLARLHFSLDVCGEEEDDEEEEDGVTEG 155
L +L+ ++++ S E+LE ++ E+L + C EEE++++ ++ T+
Sbjct: 253 LEMLSQESEIKVKSILNSLSGEELETLKVELEQLKETFSLAEFCEEEEEEKKGDEDFTKD 312
Query: 156 LPEEQKKTMADRNLDQLLSNLEDLSNSIQK---LHLAENAEPEEQSAA 200
+ E + ++L I+K LAEN E E+QS A
Sbjct: 313 ITELFSQLHVSSKPEKLARARNTAHEWIRKSLTKPLAENEEGEKQSEA 360
>gi|148763345 cell division cycle 2-like 2 isoform 4 [Homo sapiens]
Length = 770
Score = 31.6 bits (70), Expect = 0.47
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 141 EEEDDEEEEDGVTEGLPEEQKKTMADRNLDQLLSNLEDLS-NSIQKLHLAENAEPEEQ 197
EEE++EEEE+G T EE+++ + ++ SN E+ S S +++ E +E EE+
Sbjct: 282 EEEEEEEEEEGSTSEESEEEEEEEEEEE-EETGSNSEEASEQSAEEVSEEEMSEDEER 338
Score = 28.5 bits (62), Expect = 4.0
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 92 EGGLLNLLNDFHSGRLQAFGKECSFEQL----EHVREMQEKLARLHFSLDVCGEEEDDEE 147
E LL+ L D + E S + E E +E+ + + EEE++EE
Sbjct: 247 ERDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEE 306
Query: 148 EEDGVTEGLPEEQKKTMADRNLDQLLSNLEDLSNSIQKLHLAEN 191
EE+ T EE + A+ ++ +S E+ N L + E+
Sbjct: 307 EEEEETGSNSEEASEQSAEEVSEEEMSEDEERENENHLLVVPES 350
>gi|148763347 cell division cycle 2-like 2 isoform 1 [Homo sapiens]
Length = 780
Score = 31.6 bits (70), Expect = 0.47
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 141 EEEDDEEEEDGVTEGLPEEQKKTMADRNLDQLLSNLEDLS-NSIQKLHLAENAEPEEQ 197
EEE++EEEE+G T EE+++ + ++ SN E+ S S +++ E +E EE+
Sbjct: 292 EEEEEEEEEEGSTSEESEEEEEEEEEEE-EETGSNSEEASEQSAEEVSEEEMSEDEER 348
Score = 28.5 bits (62), Expect = 4.0
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 92 EGGLLNLLNDFHSGRLQAFGKECSFEQL----EHVREMQEKLARLHFSLDVCGEEEDDEE 147
E LL+ L D + E S + E E +E+ + + EEE++EE
Sbjct: 257 ERDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEE 316
Query: 148 EEDGVTEGLPEEQKKTMADRNLDQLLSNLEDLSNSIQKLHLAEN 191
EE+ T EE + A+ ++ +S E+ N L + E+
Sbjct: 317 EEEEETGSNSEEASEQSAEEVSEEEMSEDEERENENHLLVVPES 360
>gi|16332372 cell division cycle 2-like 1 (PITSLRE proteins) isoform
9 [Homo sapiens]
Length = 771
Score = 31.6 bits (70), Expect = 0.47
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 141 EEEDDEEEEDGVTEGLPEEQKKTMADRNLDQLLSNLEDLS-NSIQKLHLAENAEPEEQ 197
EEE++EEEE+G T EE+++ + ++ SN E+ S S +++ E +E EE+
Sbjct: 283 EEEEEEEEEEGSTSEESEEEEEEEEEEE-EETGSNSEEASEQSAEEVSEEEMSEDEER 339
Score = 28.5 bits (62), Expect = 4.0
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 92 EGGLLNLLNDFHSGRLQAFGKECSFEQL----EHVREMQEKLARLHFSLDVCGEEEDDEE 147
E LL+ L D + E S + E E +E+ + + EEE++EE
Sbjct: 248 ERDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEE 307
Query: 148 EEDGVTEGLPEEQKKTMADRNLDQLLSNLEDLSNSIQKLHLAEN 191
EE+ T EE + A+ ++ +S E+ N L + E+
Sbjct: 308 EEEEETGSNSEEASEQSAEEVSEEEMSEDEERENENHLLVVPES 351
>gi|16332370 cell division cycle 2-like 1 (PITSLRE proteins) isoform
8 [Homo sapiens]
Length = 780
Score = 31.6 bits (70), Expect = 0.47
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 141 EEEDDEEEEDGVTEGLPEEQKKTMADRNLDQLLSNLEDLS-NSIQKLHLAENAEPEEQ 197
EEE++EEEE+G T EE+++ + ++ SN E+ S S +++ E +E EE+
Sbjct: 292 EEEEEEEEEEGSTSEESEEEEEEEEEEE-EETGSNSEEASEQSAEEVSEEEMSEDEER 348
Score = 28.5 bits (62), Expect = 4.0
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 92 EGGLLNLLNDFHSGRLQAFGKECSFEQL----EHVREMQEKLARLHFSLDVCGEEEDDEE 147
E LL+ L D + E S + E E +E+ + + EEE++EE
Sbjct: 257 ERDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEE 316
Query: 148 EEDGVTEGLPEEQKKTMADRNLDQLLSNLEDLSNSIQKLHLAEN 191
EE+ T EE + A+ ++ +S E+ N L + E+
Sbjct: 317 EEEEETGSNSEEASEQSAEEVSEEEMSEDEERENENHLLVVPES 360
>gi|16332364 cell division cycle 2-like 1 (PITSLRE proteins) isoform
5 [Homo sapiens]
Length = 748
Score = 31.6 bits (70), Expect = 0.47
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 141 EEEDDEEEEDGVTEGLPEEQKKTMADRNLDQLLSNLEDLS-NSIQKLHLAENAEPEEQ 197
EEE++EEEE+G T EE+++ + ++ SN E+ S S +++ E +E EE+
Sbjct: 260 EEEEEEEEEEGSTSEESEEEEEEEEEEE-EETGSNSEEASEQSAEEVSEEEMSEDEER 316
Score = 28.5 bits (62), Expect = 4.0
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 92 EGGLLNLLNDFHSGRLQAFGKECSFEQL----EHVREMQEKLARLHFSLDVCGEEEDDEE 147
E LL+ L D + E S + E E +E+ + + EEE++EE
Sbjct: 225 ERDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEE 284
Query: 148 EEDGVTEGLPEEQKKTMADRNLDQLLSNLEDLSNSIQKLHLAEN 191
EE+ T EE + A+ ++ +S E+ N L + E+
Sbjct: 285 EEEEETGSNSEEASEQSAEEVSEEEMSEDEERENENHLLVVPES 328
>gi|16332362 cell division cycle 2-like 1 (PITSLRE proteins) isoform
4 [Homo sapiens]
Length = 737
Score = 31.6 bits (70), Expect = 0.47
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 141 EEEDDEEEEDGVTEGLPEEQKKTMADRNLDQLLSNLEDLS-NSIQKLHLAENAEPEEQ 197
EEE++EEEE+G T EE+++ + ++ SN E+ S S +++ E +E EE+
Sbjct: 249 EEEEEEEEEEGSTSEESEEEEEEEEEEE-EETGSNSEEASEQSAEEVSEEEMSEDEER 305
Score = 28.5 bits (62), Expect = 4.0
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 92 EGGLLNLLNDFHSGRLQAFGKECSFEQL----EHVREMQEKLARLHFSLDVCGEEEDDEE 147
E LL+ L D + E S + E E +E+ + + EEE++EE
Sbjct: 214 ERDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEE 273
Query: 148 EEDGVTEGLPEEQKKTMADRNLDQLLSNLEDLSNSIQKLHLAEN 191
EE+ T EE + A+ ++ +S E+ N L + E+
Sbjct: 274 EEEEETGSNSEEASEQSAEEVSEEEMSEDEERENENHLLVVPES 317
>gi|16332360 cell division cycle 2-like 1 (PITSLRE proteins) isoform
3 [Homo sapiens]
Length = 526
Score = 31.6 bits (70), Expect = 0.47
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 141 EEEDDEEEEDGVTEGLPEEQKKTMADRNLDQLLSNLEDLS-NSIQKLHLAENAEPEEQ 197
EEE++EEEE+G T EE+++ + ++ SN E+ S S +++ E +E EE+
Sbjct: 38 EEEEEEEEEEGSTSEESEEEEEEEEEEE-EETGSNSEEASEQSAEEVSEEEMSEDEER 94
Score = 28.5 bits (62), Expect = 4.0
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 92 EGGLLNLLNDFHSGRLQAFGKECSFEQL----EHVREMQEKLARLHFSLDVCGEEEDDEE 147
E LL+ L D + E S + E E +E+ + + EEE++EE
Sbjct: 3 ERDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEE 62
Query: 148 EEDGVTEGLPEEQKKTMADRNLDQLLSNLEDLSNSIQKLHLAEN 191
EE+ T EE + A+ ++ +S E+ N L + E+
Sbjct: 63 EEEEETGSNSEEASEQSAEEVSEEEMSEDEERENENHLLVVPES 106
>gi|16332358 cell division cycle 2-like 1 (PITSLRE proteins) isoform
2 [Homo sapiens]
Length = 782
Score = 31.6 bits (70), Expect = 0.47
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 141 EEEDDEEEEDGVTEGLPEEQKKTMADRNLDQLLSNLEDLS-NSIQKLHLAENAEPEEQ 197
EEE++EEEE+G T EE+++ + ++ SN E+ S S +++ E +E EE+
Sbjct: 294 EEEEEEEEEEGSTSEESEEEEEEEEEEE-EETGSNSEEASEQSAEEVSEEEMSEDEER 350
Score = 28.5 bits (62), Expect = 4.0
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 92 EGGLLNLLNDFHSGRLQAFGKECSFEQL----EHVREMQEKLARLHFSLDVCGEEEDDEE 147
E LL+ L D + E S + E E +E+ + + EEE++EE
Sbjct: 259 ERDLLSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEE 318
Query: 148 EEDGVTEGLPEEQKKTMADRNLDQLLSNLEDLSNSIQKLHLAEN 191
EE+ T EE + A+ ++ +S E+ N L + E+
Sbjct: 319 EEEEETGSNSEEASEQSAEEVSEEEMSEDEERENENHLLVVPES 362
>gi|50727002 pseudouridylate synthase 7 homolog [Homo sapiens]
Length = 661
Score = 31.6 bits (70), Expect = 0.47
Identities = 12/25 (48%), Positives = 20/25 (80%)
Query: 142 EEDDEEEEDGVTEGLPEEQKKTMAD 166
E+++EEEEDG++E EE+ ++ AD
Sbjct: 79 EDEEEEEEDGLSEECEEEESESFAD 103
>gi|38372933 chromatin modifying protein 2A [Homo sapiens]
Length = 222
Score = 31.2 bits (69), Expect = 0.61
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 116 FEQLEHVREMQEKLARLHFSLDVCGEEEDDEEEEDGVTEGLPEEQKKTMADRNLDQLLSN 175
FE+ + +M+E++ ++ ++D +E+DEEE D V + +E ++ D LSN
Sbjct: 129 FERQAEIMDMKEEM--MNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDE-----LSN 181
Query: 176 LEDLSNSIQKLHLAENAEPEEQSAA 200
L S+ + AE + A
Sbjct: 182 LPSTGGSLSVAAGGKKAEAAASALA 206
>gi|7656922 chromatin modifying protein 2A [Homo sapiens]
Length = 222
Score = 31.2 bits (69), Expect = 0.61
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 116 FEQLEHVREMQEKLARLHFSLDVCGEEEDDEEEEDGVTEGLPEEQKKTMADRNLDQLLSN 175
FE+ + +M+E++ ++ ++D +E+DEEE D V + +E ++ D LSN
Sbjct: 129 FERQAEIMDMKEEM--MNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDE-----LSN 181
Query: 176 LEDLSNSIQKLHLAENAEPEEQSAA 200
L S+ + AE + A
Sbjct: 182 LPSTGGSLSVAAGGKKAEAAASALA 206
>gi|15812178 zinc finger protein 36, C3H type-like 2 [Homo sapiens]
Length = 494
Score = 31.2 bits (69), Expect = 0.61
Identities = 40/135 (29%), Positives = 52/135 (38%), Gaps = 30/135 (22%)
Query: 1 MDDKKKKRSPKPCLAQPAQAPGTLRRVPVPTSHSGSLALGLPH-LPSPKQRAKFKRVGKE 59
M DKK +P APG LRR HS S L H PSP
Sbjct: 30 MLDKKAVGTPVAAAPSSGFAPGFLRR------HSASNLHALAHPAPSP-----------G 72
Query: 60 KCRPVLAGG------GSGSAGTPLQHSFLTEVTDVYEMEGGLLNLLNDFHSGRLQAFGKE 113
C P G GS +AG P + L E + GG LLN + R ++F +
Sbjct: 73 SCSPKFPGAANGSSCGSAAAGGPTSYGTLKEPSG-----GGGTALLNKENKFRDRSFSEN 127
Query: 114 CSFEQ-LEHVREMQE 127
Q L H+++ Q+
Sbjct: 128 GDRSQHLLHLQQQQK 142
>gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens]
Length = 1499
Score = 31.2 bits (69), Expect = 0.61
Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 16/65 (24%)
Query: 12 PCLAQPAQAPGTLRRVPVPTSHSGSLALGLPHLPSPKQRAKFKRVGKEKCRPVLAGGGSG 71
P +A P PG ++P+ S S G PH P P RP GGG G
Sbjct: 184 PAMAAPQLGPGQTTQLPL----SESSVPGAPHGPPPG------------LRPDAPGGGGG 227
Query: 72 SAGTP 76
G P
Sbjct: 228 GGGVP 232
>gi|46852174 kinesin family member 3A [Homo sapiens]
Length = 699
Score = 30.8 bits (68), Expect = 0.80
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 107 LQAFGKECSFEQLEHVREMQEKLARLHFSLDVCGEEEDDEEEEDGVTEGLPEEQKKTMAD 166
L+ F KE E+L+ E E+++ D+ G EEDD+EE + +G ++++
Sbjct: 360 LRQFQKE--IEELKKKLEEGEEIS----GSDISGSEEDDDEEGEVGEDGEKRKKRRGKKK 413
Query: 167 RNLDQLLSNLEDLSNSIQKLHLAENAEPEEQSAA 200
+ D+++ + + L + E EE++ A
Sbjct: 414 VSPDKMIEMQAKIDEERKALETKLDMEEEERNKA 447
>gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 30.8 bits (68), Expect = 0.80
Identities = 22/51 (43%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 6 KKRSPKPCLAQPA-QAPGTLRRVPVPTSH-----SGSLALGLPHLPSPKQR 50
K P PCLAQ A +A G R + SGSLAL LP P+QR
Sbjct: 284 KLSPPFPCLAQSASRAAGARRALSASRGRRGLLGSGSLALPLPGCREPRQR 334
>gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 30.8 bits (68), Expect = 0.80
Identities = 22/51 (43%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 6 KKRSPKPCLAQPA-QAPGTLRRVPVPTSH-----SGSLALGLPHLPSPKQR 50
K P PCLAQ A +A G R + SGSLAL LP P+QR
Sbjct: 284 KLSPPFPCLAQSASRAAGARRALSASRGRRGLLGSGSLALPLPGCREPRQR 334
>gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 30.8 bits (68), Expect = 0.80
Identities = 22/51 (43%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 6 KKRSPKPCLAQPA-QAPGTLRRVPVPTSH-----SGSLALGLPHLPSPKQR 50
K P PCLAQ A +A G R + SGSLAL LP P+QR
Sbjct: 284 KLSPPFPCLAQSASRAAGARRALSASRGRRGLLGSGSLALPLPGCREPRQR 334
>gi|27597085 tropomyosin 1 alpha chain isoform 5 [Homo sapiens]
Length = 284
Score = 30.8 bits (68), Expect = 0.80
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 90 EMEGGLLNLLNDFHSGRLQAFGKECSFEQLEH-VREMQEKLARLHFSLDVCGEEEDDEEE 148
E+ L+ + +D +A E QLE +R M + L L + D ++ED EE
Sbjct: 164 EVARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDRYEE 223
Query: 149 EDGV-TEGLPE-EQKKTMADRNLDQLLSNLEDLSNSIQKLHLAENAEPEE 196
E V ++ L E E + A+R++ +L +++DL + + L A EE
Sbjct: 224 EIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEE 273
>gi|118572606 hemicentin 1 [Homo sapiens]
Length = 5635
Score = 30.8 bits (68), Expect = 0.80
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 1 MDDKKKKRSPKPCLAQPAQAPGTLRRVPVPTSH---SGSLALGLPHLPS 46
MD + ++ PKPC Q + PG+ + + P H G GL LP+
Sbjct: 5314 MDINECEQVPKPCAHQCSNTPGSFKCICPPGQHLLGDGKSCAGLERLPN 5362
>gi|98986461 neurogenic differentiation 2 [Homo sapiens]
Length = 382
Score = 30.8 bits (68), Expect = 0.80
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 129 LARLHFSLDVCGEEEDDEEEEDGVTEGLPEEQKK 162
LA + ++ GEEE++EEEE+G+ E E KK
Sbjct: 70 LAEVKEEGELGGEEEEEEEEEEGLDEAEGERPKK 103
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.131 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,255,023
Number of Sequences: 37866
Number of extensions: 527254
Number of successful extensions: 4629
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 161
Number of HSP's that attempted gapping in prelim test: 4061
Number of HSP's gapped (non-prelim): 512
length of query: 200
length of database: 18,247,518
effective HSP length: 97
effective length of query: 103
effective length of database: 14,574,516
effective search space: 1501175148
effective search space used: 1501175148
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.