Guide to the Human Genome
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Name: FAM114A2 Sequence: fasta or formatted (505aa) NCBI GI: 93102375
Description:

hypothetical protein LOC10827

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         37           2
 C cysteine            1.0          5           1
 D aspartate           3.8         19           2
 E glutamate          13.3         67           6
 F phenylalanine       3.0         15           1
 G glycine             5.3         27           2
 H histidine           2.0         10           1
 I isoleucine          5.5         28           1
 K lysine              8.1         41           2
 L leucine            10.1         51           3
 M methionine          1.2          6           1
 N asparagine          3.8         19           1
 P proline             3.6         18           1
 Q glutamine           3.8         19           1
 R arginine            2.8         14           1
 S serine             10.5         53           2
 T threonine           7.5         38           2
 V valine              5.9         30           2
 W tryptophan          0.8          4           1
 Y tyrosine            0.8          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC10827 
FAM114A1              0.364   hypothetical protein LOC92689 
MYH13                 0.022   myosin, heavy polypeptide 13, skeletal muscle [Homo...
MYH15                 0.018   myosin, heavy polypeptide 15 
CENPE                 0.018   centromere protein E 
FAM186A               0.016   family with sequence similarity 186, member A [Homo...
LOC643677             0.016   hypothetical protein LOC643677 
LOC643677             0.016   PREDICTED: hypothetical protein LOC643677 
LOC643677             0.016   PREDICTED: hypothetical protein LOC643677 
LOC643677             0.016   PREDICTED: hypothetical protein LOC643677 
TPM1                  0.016   tropomyosin 1 alpha chain isoform 1 
TPM1                  0.016   tropomyosin 1 alpha chain isoform 3 
MYH2                  0.016   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.016   myosin, heavy chain 2, skeletal muscle, adult [Homo...
TPM2                  0.016   tropomyosin 2 (beta) isoform 2 
RAI14                 0.016   retinoic acid induced 14 isoform d 
RAI14                 0.016   retinoic acid induced 14 isoform c 
RAI14                 0.016   retinoic acid induced 14 isoform b 
RAI14                 0.016   retinoic acid induced 14 isoform a 
RAI14                 0.016   retinoic acid induced 14 isoform a 
RAI14                 0.016   retinoic acid induced 14 isoform a 
MYH8                  0.016   myosin, heavy chain 8, skeletal muscle, perinatal [...
CCDC112               0.016   coiled-coil domain containing 112 isoform 1 
CCDC112               0.016   coiled-coil domain containing 112 isoform 2 
CCDC19                0.016   nasopharyngeal epithelium specific protein 1 
TPM4                  0.015   tropomyosin 4 isoform 1 
TPM4                  0.015   tropomyosin 4 isoform 2 
TPM1                  0.015   tropomyosin 1 alpha chain isoform 4 
MYH7                  0.015   myosin, heavy chain 7, cardiac muscle, beta 
GOLGB1                0.015   golgi autoantigen, golgin subfamily b, macrogolgin ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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