Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FAM124A Sequence: fasta or formatted (582aa) NCBI GI: 31542760
Description:

hypothetical protein LOC220108

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         36           2
 C cysteine            2.4         14           2
 D aspartate           5.7         33           2
 E glutamate           5.7         33           2
 F phenylalanine       4.1         24           2
 G glycine             6.5         38           4
 H histidine           4.1         24           3
 I isoleucine          3.1         18           2
 K lysine              3.4         20           2
 L leucine             8.4         49           2
 M methionine          0.7          4           1
 N asparagine          2.1         12           1
 P proline            10.8         63           4
 Q glutamine           4.8         28           2
 R arginine            6.4         37           4
 S serine             11.3         66           5
 T threonine           5.7         33           2
 V valine              4.6         27           2
 W tryptophan          2.1         12           1
 Y tyrosine            1.9         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC220108 
FAM124B               0.168   hypothetical protein LOC79843 isoform a 
FAM124B               0.166   hypothetical protein LOC79843 isoform b 
MUC4                  0.021   mucin 4 isoform a 
MUC5AC                0.020   mucin 5AC 
MUC16                 0.014   mucin 16 
LOC100133756          0.014   PREDICTED: hypothetical protein, partial 
MUC2                  0.013   mucin 2 precursor 
WIPF1                 0.013   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.013   WAS/WASL interacting protein family, member 1 
MUC5B                 0.013   mucin 5, subtype B, tracheobronchial 
LOC100132839          0.012   PREDICTED: hypothetical protein 
LOC100132839          0.012   PREDICTED: hypothetical protein 
EP300                 0.012   E1A binding protein p300 
NACA                  0.012   nascent polypeptide-associated complex alpha subuni...
LDB3                  0.011   LIM domain binding 3 isoform 1 
ARHGAP17              0.011   nadrin isoform 1 
SRRM2                 0.011   splicing coactivator subunit SRm300 
MUC7                  0.010   mucin 7, secreted precursor 
LOC100130360          0.010   PREDICTED: hypothetical protein 
MUC7                  0.010   mucin 7, secreted precursor 
MUC7                  0.010   mucin 7, secreted precursor 
EFS                   0.010   embryonal Fyn-associated substrate isoform 2 
EFS                   0.010   embryonal Fyn-associated substrate isoform 1 
ARHGAP17              0.010   nadrin isoform 2 
PAPOLA                0.010   poly(A) polymerase alpha 
MAML3                 0.010   mastermind-like 3 
CASKIN2               0.009   cask-interacting protein 2 isoform b 
CASKIN2               0.009   cask-interacting protein 2 isoform a 
FLJ10404              0.009   hypothetical protein LOC54540 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press