Guide to the Human Genome
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Name: CDR2 Sequence: fasta or formatted (454aa) NCBI GI: 55770832
Description:

cerebellar degeneration-related protein 2

Referenced in:

Cerebellum

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         29           3
 C cysteine            1.3          6           1
 D aspartate           4.2         19           1
 E glutamate          13.4         61           3
 F phenylalanine       2.0          9           1
 G glycine             3.1         14           1
 H histidine           2.6         12           1
 I isoleucine          2.6         12           1
 K lysine              7.7         35           2
 L leucine            11.9         54           2
 M methionine          2.0          9           1
 N asparagine          2.4         11           1
 P proline             4.0         18           2
 Q glutamine           8.8         40           2
 R arginine            4.2         19           2
 S serine              8.6         39           3
 T threonine           5.5         25           2
 V valine              5.9         27           1
 W tryptophan          0.4          2           1
 Y tyrosine            2.9         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cerebellar degeneration-related protein 2 
CDR2L                 0.360   cerebellar degeneration-related protein 2-like [Hom...
NUMA1                 0.045   nuclear mitotic apparatus protein 1 
MYH9                  0.039   myosin, heavy polypeptide 9, non-muscle 
CENPF                 0.035   centromere protein F 
TPR                   0.035   nuclear pore complex-associated protein TPR 
DCTN1                 0.034   dynactin 1 isoform 4 
DCTN1                 0.034   dynactin 1 isoform 3 
DCTN1                 0.034   dynactin 1 isoform 2 
DCTN1                 0.034   dynactin 1 isoform 1 
MYH10                 0.034   myosin, heavy polypeptide 10, non-muscle 
MYH13                 0.034   myosin, heavy polypeptide 13, skeletal muscle [Homo...
GCC2                  0.031   GRIP and coiled-coil domain-containing 2 
MYH11                 0.031   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.031   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.031   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.031   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
FHAD1                 0.031   forkhead-associated (FHA) phosphopeptide binding do...
KTN1                  0.031   kinectin 1 isoform b 
KTN1                  0.031   kinectin 1 isoform a 
KTN1                  0.031   kinectin 1 isoform c 
KTN1                  0.031   kinectin 1 isoform a 
ERC1                  0.031   RAB6-interacting protein 2 isoform epsilon 
AZI1                  0.030   5-azacytidine induced 1 isoform b 
CCDC88A               0.029   coiled-coil domain containing 88A isoform 1 
MYH15                 0.029   myosin, heavy polypeptide 15 
TRAK1                 0.029   OGT(O-Glc-NAc transferase)-interacting protein 106 ...
TRAK1                 0.029   OGT(O-Glc-NAc transferase)-interacting protein 106 K...
KIF4A                 0.029   kinesin family member 4 
ZNF853                0.029   zinc finger protein 853 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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