Guide to the Human Genome
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Name: CHMP2A Sequence: fasta or formatted (222aa) NCBI GI: 7656922
Description:

chromatin modifying protein 2A

Referenced in:

Mammary Tissues
ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt mRNA [222aa] chromatin modifying protein 2A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.3         25           3
 C cysteine            0.0          0           0
 D aspartate           8.1         18           2
 E glutamate           9.5         21           3
 F phenylalanine       1.4          3           1
 G glycine             4.5         10           2
 H histidine           0.0          0           0
 I isoleucine          4.5         10           2
 K lysine              8.6         19           2
 L leucine            10.8         24           2
 M methionine          7.7         17           2
 N asparagine          4.1          9           2
 P proline             1.4          3           1
 Q glutamine           6.3         14           1
 R arginine            8.6         19           2
 S serine              5.0         11           1
 T threonine           3.6          8           1
 V valine              4.5         10           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chromatin modifying protein 2A 
CHMP2A                1.000   chromatin modifying protein 2A 
CHMP2B                0.266   chromatin modifying protein 2B 
VPS24                 0.175   vacuolar protein sorting 24 isoform 1 
CHMP1B                0.170   chromatin modifying protein 1B 
CHMP1A                0.145   chromatin modifying protein 1A isoform 2 
CHMP5                 0.074   chromatin modifying protein 5 
VPS24                 0.074   vacuolar protein sorting 24 isoform 2 
FHAD1                 0.058   forkhead-associated (FHA) phosphopeptide binding do...
CROCC                 0.048   ciliary rootlet coiled-coil 
KIF20B                0.043   M-phase phosphoprotein 1 
MYH11                 0.033   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.033   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.033   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.033   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MAD1L1                0.033   MAD1-like 1 protein 
MAD1L1                0.033   MAD1-like 1 protein 
MAD1L1                0.033   MAD1-like 1 protein 
MYH10                 0.033   myosin, heavy polypeptide 10, non-muscle 
SFRS17A               0.033   DNA segment on chromosome X and Y (unique) 155 expre...
WDR87                 0.030   NYD-SP11 protein 
RPGRIP1               0.030   retinitis pigmentosa GTPase regulator interacting p...
GOLGA4                0.030   golgi autoantigen, golgin subfamily a, 4 
FILIP1L               0.025   filamin A interacting protein 1-like isoform 3 [Hom...
FILIP1L               0.025   filamin A interacting protein 1-like isoform 2 [Hom...
FILIP1L               0.025   filamin A interacting protein 1-like isoform 1 [Hom...
FILIP1                0.025   filamin A interacting protein 1 
PPP1R13B              0.025   apoptosis-stimulating protein of p53, 1 
PPFIA1                0.023   PTPRF interacting protein alpha 1 isoform a 
PPFIA1                0.023   PTPRF interacting protein alpha 1 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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