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Search of human proteins with 156415990
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|156415990 Y box binding protein 2 [Homo sapiens]
(364 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|156415990 Y box binding protein 2 [Homo sapiens] 755 0.0
gi|224586882 cold shock domain protein A isoform a [Homo sapiens] 238 6e-63
gi|34098946 nuclease sensitive element binding protein 1 [Homo s... 233 2e-61
gi|224586884 cold shock domain protein A isoform b [Homo sapiens] 218 7e-57
gi|51972214 lin-28 homolog B [Homo sapiens] 69 7e-12
gi|13375938 lin-28 homolog [Homo sapiens] 68 1e-11
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 60 2e-09
gi|150170670 piccolo isoform 2 [Homo sapiens] 57 2e-08
gi|150378539 piccolo isoform 1 [Homo sapiens] 57 2e-08
gi|19924097 synapsin I isoform Ib [Homo sapiens] 55 1e-07
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 55 1e-07
gi|19924099 synapsin I isoform Ia [Homo sapiens] 54 3e-07
gi|163965366 nascent polypeptide-associated complex alpha subuni... 53 4e-07
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens] 51 1e-06
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens] 51 1e-06
gi|169163019 PREDICTED: hypothetical protein [Homo sapiens] 51 1e-06
gi|188536004 zinc finger protein 469 [Homo sapiens] 50 3e-06
gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H... 49 5e-06
gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho... 49 5e-06
gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Hom... 49 5e-06
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 49 5e-06
gi|126090909 engrailed homeobox 1 [Homo sapiens] 49 7e-06
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom... 49 7e-06
gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Hom... 49 7e-06
gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo sap... 49 7e-06
gi|38787970 tensin like C1 domain containing phosphatase isoform... 48 1e-05
gi|38787957 tensin like C1 domain containing phosphatase isoform... 48 1e-05
gi|38787941 tensin like C1 domain containing phosphatase isoform... 48 1e-05
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 48 1e-05
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 48 2e-05
>gi|156415990 Y box binding protein 2 [Homo sapiens]
Length = 364
Score = 755 bits (1950), Expect = 0.0
Identities = 364/364 (100%), Positives = 364/364 (100%)
Query: 1 MSEVEAAAGATAVPAATVPATAAGVVAVVVPVPAGEPQKGGGAGGGGGAASGPAAGTPSA 60
MSEVEAAAGATAVPAATVPATAAGVVAVVVPVPAGEPQKGGGAGGGGGAASGPAAGTPSA
Sbjct: 1 MSEVEAAAGATAVPAATVPATAAGVVAVVVPVPAGEPQKGGGAGGGGGAASGPAAGTPSA 60
Query: 61 PGSRTPGNPATAVSGTPAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVF 120
PGSRTPGNPATAVSGTPAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVF
Sbjct: 61 PGSRTPGNPATAVSGTPAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVF 120
Query: 121 VHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRKS 180
VHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRKS
Sbjct: 121 VHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRKS 180
Query: 181 RRFIPRPPSVAPPPMVAEIPSAGTGPGSKGERAEDSGQRPRRWCPPPFFYRRRFVRGPRP 240
RRFIPRPPSVAPPPMVAEIPSAGTGPGSKGERAEDSGQRPRRWCPPPFFYRRRFVRGPRP
Sbjct: 181 RRFIPRPPSVAPPPMVAEIPSAGTGPGSKGERAEDSGQRPRRWCPPPFFYRRRFVRGPRP 240
Query: 241 PNQQQPIEGTDRVEPKETAPLEGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEGGDG 300
PNQQQPIEGTDRVEPKETAPLEGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEGGDG
Sbjct: 241 PNQQQPIEGTDRVEPKETAPLEGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEGGDG 300
Query: 301 ETKPSQGPADGSRPEPQRPRNRPYFQRRRQQAPGPQQAPGPRQPAAPETSAPVNSGDPTT 360
ETKPSQGPADGSRPEPQRPRNRPYFQRRRQQAPGPQQAPGPRQPAAPETSAPVNSGDPTT
Sbjct: 301 ETKPSQGPADGSRPEPQRPRNRPYFQRRRQQAPGPQQAPGPRQPAAPETSAPVNSGDPTT 360
Query: 361 TILE 364
TILE
Sbjct: 361 TILE 364
>gi|224586882 cold shock domain protein A isoform a [Homo sapiens]
Length = 372
Score = 238 bits (607), Expect = 6e-63
Identities = 166/373 (44%), Positives = 196/373 (52%), Gaps = 29/373 (7%)
Query: 7 AAGATAVPAATVPATAAGVVAVVVPVPAGEPQKGGGAGGGGGAASGPAAGTPSAPGS-RT 65
A AT T+P A PA P+ G+G AA PAA PG
Sbjct: 4 AGEATTTTTTTLPQAPTEAAAAAPQDPA--PKSPVGSGAPQAAAPAPAAHVAGNPGGDAA 61
Query: 66 PGNPATAVSGTPAPPARSQ-ADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQT 124
P TA + + A A S+ A+K VLA +VLGTVKWFNVRNGYGFINRNDTKEDVFVHQT
Sbjct: 62 PAATGTAAAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQT 121
Query: 125 AIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRKSRRFI 184
AIK+NNPRK+LRSVGDGETVEFDVVEGEKGAEA NVTGP GVPV+GSRYA +RR+ RR
Sbjct: 122 AIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGY 181
Query: 185 PRPPSVAPPPMVAEIPSAGTGPGSKG----------ERAEDSGQRP------RRWCPPPF 228
P E G+G S+G A + +RP R+ PP+
Sbjct: 182 YGRRRGPPRNYAGEEEEEGSG-SSEGFDPPATDRQFSGARNQLRRPQYRPQYRQRRFPPY 240
Query: 229 FYRRRFVRGPRPPNQQQPIEGTDRVEPKETAPLEGHQQQGDERVPPPRFRPRYRRPFRPR 288
+ F R R I+ + E K+ P EG Q QG P +RPRYR PR
Sbjct: 241 HVGQTFDRRSRVLPHPNRIQAGEIGEMKDGVP-EGAQLQGPVH-RNPTYRPRYRSRGPPR 298
Query: 289 PRQQPTTEGGDGETKPSQGPADG-SRPEPQRPRNRPYFQRRRQQAPGPQQAPGPRQPAAP 347
PR P G+ E K +Q G ++P +R RPY RRR P P AP A
Sbjct: 299 PRPAPAV--GEAEDKENQQATSGPNQPSVRRGYRRPYNYRRR---PRPPNAPSQDGKEAK 353
Query: 348 ETSAPVNSGDPTT 360
AP + P T
Sbjct: 354 AGEAPTENPAPPT 366
>gi|34098946 nuclease sensitive element binding protein 1 [Homo
sapiens]
Length = 324
Score = 233 bits (595), Expect = 2e-61
Identities = 156/355 (43%), Positives = 193/355 (54%), Gaps = 58/355 (16%)
Query: 11 TAVPAATVPATAAGVVAVVVPVPAGEPQKGGGAGGGGGAASGPAAGTPSAPGSRTPGNPA 70
T P A PA A A P G G G+GG GG S AG
Sbjct: 7 TQQPPAAPPAAPALSAADTKPGTTGS---GAGSGGPGGLTSAAPAG-------------- 49
Query: 71 TAVSGTPAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNN 130
DK V+A +VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIK+NN
Sbjct: 50 --------------GDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNN 95
Query: 131 PRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRKSRRFIPRPPSV 190
PRK+LRSVGDGETVEFDVVEGEKGAEA NVTGPGGVPV+GS+YA +R RR+ P
Sbjct: 96 PRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRY---PRRR 152
Query: 191 APPPMVAE-IPSAGTGPGSKGERAEDSGQ----RP-RRWCPPPFFYRRRFVRGPR---PP 241
PP + ++ +G ++G + GQ RP RR PP++ RR + R P+ PP
Sbjct: 153 GPPRNYQQNYQNSESGEKNEGSESAPEGQAQQRRPYRRRRFPPYYMRRPYGRRPQYSNPP 212
Query: 242 NQQQPIEGTDRVEPKETA-PLEGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEGGDG 300
Q + +EG D E P+ + +G +RPR+R R PRQ+ E G+
Sbjct: 213 VQGEVMEGADNQGAGEQGRPVRQNMYRG--------YRPRFR---RGPPRQRQPREDGNE 261
Query: 301 ETKPSQG-PADGSRPEPQRPRNRPYFQRRRQQAPGPQQAPGPR--QPAAPETSAP 352
E K +QG G +P +R R ++RRR + P PQ + P A +SAP
Sbjct: 262 EDKENQGDETQGQQPPQRRYRRNFNYRRRRPENPKPQDGKETKAADPPAENSSAP 316
>gi|224586884 cold shock domain protein A isoform b [Homo sapiens]
Length = 303
Score = 218 bits (555), Expect = 7e-57
Identities = 148/319 (46%), Positives = 171/319 (53%), Gaps = 30/319 (9%)
Query: 7 AAGATAVPAATVPATAAGVVAVVVPVPAGEPQKGGGAGGGGGAASGPAAGTPSAPGS-RT 65
A AT T+P A PA P+ G+G AA PAA PG
Sbjct: 4 AGEATTTTTTTLPQAPTEAAAAAPQDPA--PKSPVGSGAPQAAAPAPAAHVAGNPGGDAA 61
Query: 66 PGNPATAVSGTPAPPARSQ-ADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQT 124
P TA + + A A S+ A+K VLA +VLGTVKWFNVRNGYGFINRNDTKEDVFVHQT
Sbjct: 62 PAATGTAAAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQT 121
Query: 125 AIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRKSRR-F 183
AIK+NNPRK+LRSVGDGETVEFDVVEGEKGAEA NVTGP GVPV+GSRYA +RR+ RR +
Sbjct: 122 AIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGY 181
Query: 184 IPRPPSVAPPPMVAEIPSAGTGPGSKGERAEDSGQRPRRWCPPPFFYRRRFVRGPRPPNQ 243
R PP EI G E A+ G R P + R RGP P
Sbjct: 182 YGR--RRGPPRNAGEI---GEMKDGVPEGAQLQGPVHRN----PTYRPRYRSRGPPRP-- 230
Query: 244 QQPIEGTDRVEPKETAPLEGHQQQGDERVPPPRFRPRYRRPF----RPRPRQQPTTEGGD 299
+P E KE QQ P R YRRP+ RPRP P+ +G
Sbjct: 231 -RPAPAVGEAEDKE-------NQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDG-- 280
Query: 300 GETKPSQGPADGSRPEPQR 318
E K + P + P Q+
Sbjct: 281 KEAKAGEAPTENPAPPTQQ 299
>gi|51972214 lin-28 homolog B [Homo sapiens]
Length = 250
Score = 68.9 bits (167), Expect = 7e-12
Identities = 50/140 (35%), Positives = 65/140 (46%), Gaps = 23/140 (16%)
Query: 54 AAGTPSAPGSRTPGNPATAVSGTPAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFI--- 110
A G S G PG P P A++ ++ G KWFNVR G+GFI
Sbjct: 2 AEGGASKGGGEEPGK-------LPEP-----AEEESQVLRGTGHCKWFNVRMGFGFISMI 49
Query: 111 NRN----DTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGV 166
NR D DVFVHQ+ + RS+ +GE VEF + KG E+ VTGPGG
Sbjct: 50 NREGSPLDIPVDVFVHQSKLFMEG----FRSLKEGEPVEFTFKKSSKGLESIRVTGPGGS 105
Query: 167 PVKGSRYAPNRRKSRRFIPR 186
P GS P + ++ P+
Sbjct: 106 PCLGSERRPKGKTLQKRKPK 125
>gi|13375938 lin-28 homolog [Homo sapiens]
Length = 209
Score = 68.2 bits (165), Expect = 1e-11
Identities = 44/113 (38%), Positives = 59/113 (52%), Gaps = 13/113 (11%)
Query: 77 PAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRN-------DTKEDVFVHQTAIKRN 129
P AR+ AD+P L + G KWFNVR G+GF++ D DVFVHQ+ +
Sbjct: 25 PEDAARA-ADEPQL-LHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHME 82
Query: 130 NPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRKSRR 182
RS+ +GE VEF + KG E+ VTGPGGV GS P + ++
Sbjct: 83 G----FRSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGSERRPKGKSMQK 131
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 60.5 bits (145), Expect = 2e-09
Identities = 53/199 (26%), Positives = 71/199 (35%), Gaps = 22/199 (11%)
Query: 163 PGGVPVKGSRYAPNRRKSRRFIPRPPS---VAPPPMVAEIPSAGTGPGSKGERAEDSGQR 219
P G P G P + + PR P PPP P P K + G +
Sbjct: 129 PQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGK 188
Query: 220 PRRWCPPPFFYRRRFVRGPRPPNQQQPIEGTDRVEPKETAPLEGHQQQGDERVPPPRFRP 279
+ PPP +GP P + + +P+ P G+Q QG PPP +P
Sbjct: 189 KPQGPPPP-----GKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGP---PPPPGKP 240
Query: 280 RYRRPFRPRPRQQPTTEGGDGETKPSQGPADG------SRPEPQRPRNRPYFQRRRQQAP 333
+ P Q P G KP PA G +R P +P+ P + Q P
Sbjct: 241 QGPPPQGGNKPQGPPPPG-----KPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGP 295
Query: 334 GPQQAPGPRQPAAPETSAP 352
P P+QP AP P
Sbjct: 296 PPPAGGNPQQPQAPPAGQP 314
Score = 45.4 bits (106), Expect = 8e-05
Identities = 53/194 (27%), Positives = 69/194 (35%), Gaps = 40/194 (20%)
Query: 185 PRPPSV--APPPMVAEIPSAGTGPGSKGERAEDSGQRPRRWCPPPFFYR------RRFVR 236
P PP PPP + S + PG G +P+ PPP + +
Sbjct: 71 PPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQ 130
Query: 237 GPRPPNQQQ--PIEGTDRVEPKE-------TAPLEGHQQQGDERVPPPRFRPRYRRPFRP 287
GP PP + Q P +G P+ P G+Q QG PPP +P
Sbjct: 131 GPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGP---PPPPGKP-------- 179
Query: 288 RPRQQPTTEGGDGETKPSQGPADGSRPEPQRPRNRPYFQRRRQQAPGPQQAPGPR---QP 344
Q P +GG K QGP +P+ P+ R Q PG Q P P+ QP
Sbjct: 180 ---QGPPPQGG----KKPQGPPPPGKPQGPPPQGDK--SRSSQSPPGKPQGPPPQGGNQP 230
Query: 345 AAPETSAPVNSGDP 358
P G P
Sbjct: 231 QGPPPPPGKPQGPP 244
Score = 37.4 bits (85), Expect = 0.021
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 10/121 (8%)
Query: 236 RGPRPPNQQQPIEGTDRV--EPKETAPLEGHQQQGDERVPPPRFRPRYRRPFRPRPRQQP 293
+GP P +P +G +P+ P G++ QG PPP +P+ P + R P
Sbjct: 37 QGPSPQGGNKP-QGPPPPPGKPQGPPPQGGNKPQG----PPPPGKPQGPPPQGDKSRS-P 90
Query: 294 TTEGGDGETKPSQG--PADGSRPEPQRPRNRPYFQRRRQQAPGPQQAPGPRQPAAPETSA 351
+ G + P QG G P P +P+ P R Q P P P P ++ +
Sbjct: 91 RSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRS 150
Query: 352 P 352
P
Sbjct: 151 P 151
Score = 32.7 bits (73), Expect = 0.52
Identities = 32/109 (29%), Positives = 43/109 (39%), Gaps = 23/109 (21%)
Query: 255 PKETAPLEGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEGGDGETKPSQGPADG--S 312
P+ +P G++ QG PPP +P Q P +GG+ KP P G
Sbjct: 36 PQGPSPQGGNKPQGP---PPPPGKP-----------QGPPPQGGN---KPQGPPPPGKPQ 78
Query: 313 RPEPQRPRNR-PYFQRRRQQAPGPQ---QAPGPRQPAAPETSAPVNSGD 357
P PQ ++R P + Q P PQ Q GP P P G+
Sbjct: 79 GPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGN 127
Score = 30.8 bits (68), Expect = 2.0
Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 33 PAGEPQKGGGAGGGGGAASGPAAGTPSAPGSRTPGNPATAVSGTPAPPARSQADKP 88
P G P +GG + G G P G+ G P A G P P A +P
Sbjct: 260 PQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPA-GGNPQQPQAPPAGQP 314
Score = 30.4 bits (67), Expect = 2.6
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 31 PVPAGEPQKGGGAGGGGGAASGPAAGTPSAPGSRTPGNPATAVSGTPAPPARSQADKP 88
P P G+PQ GG ++ G P P + NP P PPA +P
Sbjct: 254 PPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQ-----GPPPPAGGNPQQP 306
Score = 29.3 bits (64), Expect = 5.8
Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 11/67 (16%)
Query: 33 PAGEPQKGGGAGGGGGAASGPAAGTPSAPGSRTPGNP-----------ATAVSGTPAPPA 81
P G P +GG G P P SR+P +P G P PP
Sbjct: 118 PQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPG 177
Query: 82 RSQADKP 88
+ Q P
Sbjct: 178 KPQGPPP 184
Score = 29.3 bits (64), Expect = 5.8
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
Query: 33 PAGEPQKGGGAGGGGGAASGPAAGTPSAPGSRTPGNPATAVSGTPAPPARSQADKP 88
P G PQ+ G G PA G P P + G P G P PP + +P
Sbjct: 281 PQGPPQQEGNNPQG---PPPPAGGNPQQPQAPPAGQP----QGPPRPPQGGRPSRP 329
Score = 28.5 bits (62), Expect = 9.9
Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Query: 33 PAGEPQKGGGAGGGGGAASGPAAGTPSAPGSRTPGNP-------ATAVSGTPAPPARSQA 85
P G P +GG G G G P G++ G P A G+ + ARS
Sbjct: 219 PQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPP 278
Query: 86 DKP 88
KP
Sbjct: 279 GKP 281
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 57.4 bits (137), Expect = 2e-08
Identities = 50/187 (26%), Positives = 78/187 (41%), Gaps = 19/187 (10%)
Query: 185 PRPPSVAPPPMVAEIPSAGTGPGSKGERAEDSGQRPRRWCPPPFFYRRRFVRGPRPPNQQ 244
P P ++A PP V + P+ GP + + P+ P GP Q
Sbjct: 386 PGPKALAQPPGVGKTPAQQPGPAKPPTQQVGT---PKPLAQQPGLQSPAKAPGPTKTPVQ 442
Query: 245 QPIEGTDRVEPKETAPLEGHQQQGDERVPPPRFR-PRYRRPFRPRPRQQPTTEGGD---- 299
QP G ++ ++ P + QQ PP + P P +P P + P + G
Sbjct: 443 QP--GPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPP 500
Query: 300 ----GETKPSQGPADGSRPEPQRPRN-RPYFQRRRQQAPGPQQAPGPRQPAAPETSAPVN 354
G TKP ++P PQ+P + +P Q+ P QQ P P +P+A +++ PV+
Sbjct: 501 SQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQ-PSPAKPSAQQSTKPVS 559
Query: 355 ---SGDP 358
SG P
Sbjct: 560 QTGSGKP 566
Score = 44.3 bits (103), Expect = 2e-04
Identities = 42/174 (24%), Positives = 64/174 (36%), Gaps = 24/174 (13%)
Query: 188 PSVAPPPMVAEIPSAGTG--PGSKGERAEDSGQRPRRWCPPPFFYRRRFVRGPRPPNQQQ 245
P+ AP P + G G P + + S Q+ PP + GP P QQ
Sbjct: 430 PAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQ------LPGPAKPPPQQ 483
Query: 246 PIEGTDRVEPKETAPLEGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEGGDGETKPS 305
P G + P++ + QQ PPP+ P +P P+Q +T+ +P
Sbjct: 484 P--GPAKPPPQQPGSAKPPSQQPGSTKPPPQ----QPGPAKPSPQQPGSTK--PPSQQPG 535
Query: 306 QGPADGSRPEPQRPRNRPYFQRRRQQAPGPQQAPGPRQPAAPETSAPVNSGDPT 359
+P P +P QQ+ P G +P P T +P P+
Sbjct: 536 SAKPSAQQPSPAKP--------SAQQSTKPVSQTGSGKPLQPPTVSPSAKQPPS 581
Score = 38.9 bits (89), Expect = 0.007
Identities = 32/124 (25%), Positives = 43/124 (34%), Gaps = 15/124 (12%)
Query: 238 PRPPNQQQPIEGTDRVEPKETAPLEGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEG 297
P P QQP G K A GH++ PP +P +P
Sbjct: 301 PSKPPIQQPTPG------KPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQ 354
Query: 298 GDGETKPSQGPADGSRPEPQ-----RPRNRPYFQRRRQQAPG----PQQAPGPRQPAAPE 348
G TKP P ++P Q +P + + Q PG P Q PGP +P +
Sbjct: 355 PPGTTKPPAQPLGPAKPPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQ 414
Query: 349 TSAP 352
P
Sbjct: 415 VGTP 418
Score = 35.0 bits (79), Expect = 0.11
Identities = 59/247 (23%), Positives = 86/247 (34%), Gaps = 36/247 (14%)
Query: 136 RSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRKSRRFIPRPPSVAPPPM 195
R +T + D+V GE VK S +P++ ++ P P P
Sbjct: 276 RDASRPQTKQADIVRGES--------------VKPSLPSPSKPPIQQPTPGKPPAQQPGH 321
Query: 196 VAEIPSAGTGPGSKGERAEDSGQRPRRWCPP--PFFYRRRFVR--GP-RPPNQQQPIE-- 248
P P + Q+P PP P + + GP +PP QQ E
Sbjct: 322 EKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKP 381
Query: 249 GTDRVEPKETAPLEG-----HQQQGDERVP--------PPRFRPRYRRPFR-PRPRQQPT 294
+++ PK A G QQ G + P P +P + P + P P + P
Sbjct: 382 SSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPV 441
Query: 295 TEGGDGETKPSQGPADGSRPEPQRPRNRPYFQRRRQQAPGPQQAPGPRQPAAPETSAPVN 354
+ G G+ P+Q G Q +P Q P PQQ + P SA
Sbjct: 442 QQPGPGKI-PAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPP 500
Query: 355 SGDPTTT 361
S P +T
Sbjct: 501 SQQPGST 507
Score = 34.3 bits (77), Expect = 0.18
Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 12/117 (10%)
Query: 239 RPPNQQQPIEGTDRVEPKETAPLEGHQQQGDERVPPPR----FRPRYRRPFRPRPRQQPT 294
+PP +PI+G + + A L Q D P + R +P P P + P
Sbjct: 250 QPPGTGKPIQGPTQTPQTDHAKLP---LQRDASRPQTKQADIVRGESVKPSLPSPSKPPI 306
Query: 295 TEGGDGETKPSQGPADGSRPEPQRPRNRPY-FQRRRQQAPG----PQQAPGPRQPAA 346
+ G+ Q + S+P P +P +P + Q PG P Q PG +P A
Sbjct: 307 QQPTPGKPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQPPGTTKPPA 363
Score = 29.6 bits (65), Expect = 4.4
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 31 PVPAGEPQKGGGAGGGGGAASGPAAGTPSAPGSRTPGNPA------TAVSGTPAPPARSQ 84
P A P + G+ GPA +P PGS P + +A +PA P+ Q
Sbjct: 494 PGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSAQQ 553
Query: 85 ADKPV 89
+ KPV
Sbjct: 554 STKPV 558
Score = 29.6 bits (65), Expect = 4.4
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 143 TVEFDVVEGEKGAEATNV--TGPGGVPVKGSRYAPNRRKSRRFIPRPPSVAPPPMVAEIP 200
T+E V G T + T P VP K S + R P P +AP P++ ++P
Sbjct: 2461 TLETTAVLRSNGLPVTRICTTAPPPVPPKPSSIPSGLVFTHRPEPSKPPIAPKPVIPQLP 2520
Query: 201 SAGTGP 206
+ P
Sbjct: 2521 TTTQKP 2526
Score = 28.5 bits (62), Expect = 9.9
Identities = 50/213 (23%), Positives = 73/213 (34%), Gaps = 49/213 (23%)
Query: 167 PVKGSRYAPNRRKSRRFIPRPPSVAPPPMVAEIPSAGTGPGSKGERAEDSGQRPRRWCPP 226
P G + +P K+ IPRP S + I G SKG++ D Q+
Sbjct: 807 PPTGEKVSPFDSKA---IPRPASDSKI-----ISHPGPSSESKGQKQVDPVQKKEE---- 854
Query: 227 PFFYRRRFVRGPRPPNQQQPIEGTDRVEPKETAPLEGHQQQGDERVPPPRFRPRYRRPFR 286
P+ + + + PK + G + + VP P+ P+ + R
Sbjct: 855 -----------PKKAQTKMSPKPDAKPMPKGSPTPPGPRPTAGQTVPTPQQSPKPQEQSR 903
Query: 287 ----------PRPRQQPTTEG--------GDGETKPSQGPADGSRPEPQRPRNRPYFQRR 328
P+ QPTT G G + SQ S P ++
Sbjct: 904 RFSLNLGSITDAPKSQPTTPQETVTGKLFGFGASIFSQASNLISTAGQPGPHSQSGPGAP 963
Query: 329 RQQAPGPQQAP---GP-----RQPAAPETSAPV 353
+QAP P Q P GP + P AP S PV
Sbjct: 964 MKQAPAPSQPPTSQGPPKSTGQAPPAPAKSIPV 996
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 57.4 bits (137), Expect = 2e-08
Identities = 50/187 (26%), Positives = 78/187 (41%), Gaps = 19/187 (10%)
Query: 185 PRPPSVAPPPMVAEIPSAGTGPGSKGERAEDSGQRPRRWCPPPFFYRRRFVRGPRPPNQQ 244
P P ++A PP V + P+ GP + + P+ P GP Q
Sbjct: 386 PGPKALAQPPGVGKTPAQQPGPAKPPTQQVGT---PKPLAQQPGLQSPAKAPGPTKTPVQ 442
Query: 245 QPIEGTDRVEPKETAPLEGHQQQGDERVPPPRFR-PRYRRPFRPRPRQQPTTEGGD---- 299
QP G ++ ++ P + QQ PP + P P +P P + P + G
Sbjct: 443 QP--GPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPP 500
Query: 300 ----GETKPSQGPADGSRPEPQRPRN-RPYFQRRRQQAPGPQQAPGPRQPAAPETSAPVN 354
G TKP ++P PQ+P + +P Q+ P QQ P P +P+A +++ PV+
Sbjct: 501 SQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQ-PSPAKPSAQQSTKPVS 559
Query: 355 ---SGDP 358
SG P
Sbjct: 560 QTGSGKP 566
Score = 44.3 bits (103), Expect = 2e-04
Identities = 42/174 (24%), Positives = 64/174 (36%), Gaps = 24/174 (13%)
Query: 188 PSVAPPPMVAEIPSAGTG--PGSKGERAEDSGQRPRRWCPPPFFYRRRFVRGPRPPNQQQ 245
P+ AP P + G G P + + S Q+ PP + GP P QQ
Sbjct: 430 PAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQ------LPGPAKPPPQQ 483
Query: 246 PIEGTDRVEPKETAPLEGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEGGDGETKPS 305
P G + P++ + QQ PPP+ P +P P+Q +T+ +P
Sbjct: 484 P--GPAKPPPQQPGSAKPPSQQPGSTKPPPQ----QPGPAKPSPQQPGSTK--PPSQQPG 535
Query: 306 QGPADGSRPEPQRPRNRPYFQRRRQQAPGPQQAPGPRQPAAPETSAPVNSGDPT 359
+P P +P QQ+ P G +P P T +P P+
Sbjct: 536 SAKPSAQQPSPAKP--------SAQQSTKPVSQTGSGKPLQPPTVSPSAKQPPS 581
Score = 38.9 bits (89), Expect = 0.007
Identities = 32/124 (25%), Positives = 43/124 (34%), Gaps = 15/124 (12%)
Query: 238 PRPPNQQQPIEGTDRVEPKETAPLEGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEG 297
P P QQP G K A GH++ PP +P +P
Sbjct: 301 PSKPPIQQPTPG------KPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQ 354
Query: 298 GDGETKPSQGPADGSRPEPQ-----RPRNRPYFQRRRQQAPG----PQQAPGPRQPAAPE 348
G TKP P ++P Q +P + + Q PG P Q PGP +P +
Sbjct: 355 PPGTTKPPAQPLGPAKPPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQ 414
Query: 349 TSAP 352
P
Sbjct: 415 VGTP 418
Score = 35.0 bits (79), Expect = 0.11
Identities = 59/247 (23%), Positives = 86/247 (34%), Gaps = 36/247 (14%)
Query: 136 RSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRKSRRFIPRPPSVAPPPM 195
R +T + D+V GE VK S +P++ ++ P P P
Sbjct: 276 RDASRPQTKQADIVRGES--------------VKPSLPSPSKPPIQQPTPGKPPAQQPGH 321
Query: 196 VAEIPSAGTGPGSKGERAEDSGQRPRRWCPP--PFFYRRRFVR--GP-RPPNQQQPIE-- 248
P P + Q+P PP P + + GP +PP QQ E
Sbjct: 322 EKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKP 381
Query: 249 GTDRVEPKETAPLEG-----HQQQGDERVP--------PPRFRPRYRRPFR-PRPRQQPT 294
+++ PK A G QQ G + P P +P + P + P P + P
Sbjct: 382 SSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPV 441
Query: 295 TEGGDGETKPSQGPADGSRPEPQRPRNRPYFQRRRQQAPGPQQAPGPRQPAAPETSAPVN 354
+ G G+ P+Q G Q +P Q P PQQ + P SA
Sbjct: 442 QQPGPGKI-PAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPPQQPGSAKPP 500
Query: 355 SGDPTTT 361
S P +T
Sbjct: 501 SQQPGST 507
Score = 34.3 bits (77), Expect = 0.18
Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 12/117 (10%)
Query: 239 RPPNQQQPIEGTDRVEPKETAPLEGHQQQGDERVPPPR----FRPRYRRPFRPRPRQQPT 294
+PP +PI+G + + A L Q D P + R +P P P + P
Sbjct: 250 QPPGTGKPIQGPTQTPQTDHAKLP---LQRDASRPQTKQADIVRGESVKPSLPSPSKPPI 306
Query: 295 TEGGDGETKPSQGPADGSRPEPQRPRNRPY-FQRRRQQAPG----PQQAPGPRQPAA 346
+ G+ Q + S+P P +P +P + Q PG P Q PG +P A
Sbjct: 307 QQPTPGKPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQPPGTTKPPA 363
Score = 29.6 bits (65), Expect = 4.4
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 31 PVPAGEPQKGGGAGGGGGAASGPAAGTPSAPGSRTPGNPA------TAVSGTPAPPARSQ 84
P A P + G+ GPA +P PGS P + +A +PA P+ Q
Sbjct: 494 PGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSAQQ 553
Query: 85 ADKPV 89
+ KPV
Sbjct: 554 STKPV 558
Score = 29.6 bits (65), Expect = 4.4
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 143 TVEFDVVEGEKGAEATNV--TGPGGVPVKGSRYAPNRRKSRRFIPRPPSVAPPPMVAEIP 200
T+E V G T + T P VP K S + R P P +AP P++ ++P
Sbjct: 2461 TLETTAVLRSNGLPVTRICTTAPPPVPPKPSSIPSGLVFTHRPEPSKPPIAPKPVIPQLP 2520
Query: 201 SAGTGP 206
+ P
Sbjct: 2521 TTTQKP 2526
Score = 28.5 bits (62), Expect = 9.9
Identities = 50/213 (23%), Positives = 73/213 (34%), Gaps = 49/213 (23%)
Query: 167 PVKGSRYAPNRRKSRRFIPRPPSVAPPPMVAEIPSAGTGPGSKGERAEDSGQRPRRWCPP 226
P G + +P K+ IPRP S + I G SKG++ D Q+
Sbjct: 807 PPTGEKVSPFDSKA---IPRPASDSKI-----ISHPGPSSESKGQKQVDPVQKKEE---- 854
Query: 227 PFFYRRRFVRGPRPPNQQQPIEGTDRVEPKETAPLEGHQQQGDERVPPPRFRPRYRRPFR 286
P+ + + + PK + G + + VP P+ P+ + R
Sbjct: 855 -----------PKKAQTKMSPKPDAKPMPKGSPTPPGPRPTAGQTVPTPQQSPKPQEQSR 903
Query: 287 ----------PRPRQQPTTEG--------GDGETKPSQGPADGSRPEPQRPRNRPYFQRR 328
P+ QPTT G G + SQ S P ++
Sbjct: 904 RFSLNLGSITDAPKSQPTTPQETVTGKLFGFGASIFSQASNLISTAGQPGPHSQSGPGAP 963
Query: 329 RQQAPGPQQAP---GP-----RQPAAPETSAPV 353
+QAP P Q P GP + P AP S PV
Sbjct: 964 MKQAPAPSQPPTSQGPPKSTGQAPPAPAKSIPV 996
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 55.1 bits (131), Expect = 1e-07
Identities = 61/201 (30%), Positives = 77/201 (38%), Gaps = 41/201 (20%)
Query: 163 PGGVPVKGSRYAPNRRKSRRFIPRPP-SVAPPPMVAE----IPSAGTGPGSKGERAEDSG 217
P G P+ P R S P+ P S A PP + P AG GPG+ +
Sbjct: 499 PAGSPL------PQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAG-GPGAPPAARPPAS 551
Query: 218 QRPRRWCPPPFFYRRRFVRGPRPPNQQQPIEGTDRVEPKETAPLEGHQQQGDERVPP-PR 276
P+R PP R+ V GP PP AP G Q+QG + PP P
Sbjct: 552 PSPQRQAGPPQATRQTSVSGPAPPK-------------ASGAPPGGQQRQGPPQKPPGPA 598
Query: 277 FRPRYRRPFRPRPRQQPTTEGGDGETKPSQGPADGSRPEPQRPRNRPYFQRRRQQAPGPQ 336
R P PR P T + +PS GP RP+PQ Q+ Q P P
Sbjct: 599 GPTRQASQAGPVPRTGPPT---TQQPRPS-GPGPAGRPKPQ------LAQKPSQDVPPPA 648
Query: 337 QA-----PGPRQPAAPETSAP 352
A P P+ A+P + P
Sbjct: 649 TAAAGGPPHPQLKASPAQAQP 669
Score = 50.4 bits (119), Expect = 2e-06
Identities = 53/209 (25%), Positives = 73/209 (34%), Gaps = 24/209 (11%)
Query: 164 GGVPVKGSRYAPNRRKSRRFIPRPPSVAPPPMVAEIPSAGTGPGSKG----ERAEDSGQR 219
G P G+ P R++ + PP+ PP P G GP +G +R GQ+
Sbjct: 434 GQTPSPGA--LPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQ 491
Query: 220 PRRWCPPPFFYRRRFVRGPRPPNQQQPIEGTDRVEPKETAPLEGHQQQGDERVPPPRFRP 279
PP P P P + + P +G +Q P P
Sbjct: 492 HLSGLGPP-------AGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPP 544
Query: 280 RYRRPFRPRPRQQP--------TTEGGDGETKPSQGPADGSRPE--PQRPRNRPYFQRRR 329
R P P P++Q T+ G K S P G + + PQ+P R+
Sbjct: 545 AARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQA 604
Query: 330 QQAPGPQQAPGPRQPAAPETSAPVNSGDP 358
QA GP GP P S P +G P
Sbjct: 605 SQA-GPVPRTGPPTTQQPRPSGPGPAGRP 632
Score = 37.7 bits (86), Expect = 0.016
Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 287 PRPRQQPTTEG-GDGETKPSQGPADGSRPEPQRPRNRPYFQRRRQQAPGPQQAPGPRQPA 345
PR RQ+ + G G PS G R Q+P P QR Q PQ PGP++
Sbjct: 419 PRQRQRDASPGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQG 478
Query: 346 APETSAPVNSG 356
P P G
Sbjct: 479 PPLQQRPPPQG 489
Score = 37.0 bits (84), Expect = 0.028
Identities = 35/120 (29%), Positives = 47/120 (39%), Gaps = 15/120 (12%)
Query: 252 RVEPKETAPLEGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEGGDGETKPS---QGP 308
R ++ +P G Q P R ++P P +Q+P +GG + P QGP
Sbjct: 420 RQRQRDASPGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGP 479
Query: 309 ADGSRPEPQRPRN-----RPYFQRRRQQAPGPQQAP-GPRQPAAPET------SAPVNSG 356
RP PQ ++ P Q+ P P AP P AAP T S PV G
Sbjct: 480 PLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGG 539
Score = 32.3 bits (72), Expect = 0.68
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 19/74 (25%)
Query: 30 VPVPAGEPQKGGGAGG----GGGAASGPAAGTPSA-PGSRTPGNPA-------------T 71
+P P PQ+ G G S P AG P A P +R P +P+ T
Sbjct: 508 LPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQT 567
Query: 72 AVSGTPAPPARSQA 85
+VSG PAPP S A
Sbjct: 568 SVSG-PAPPKASGA 580
Score = 28.5 bits (62), Expect = 9.9
Identities = 26/85 (30%), Positives = 29/85 (34%), Gaps = 8/85 (9%)
Query: 7 AAGATAVPAATVPATAAGVVAVVVP-------VPAGEPQKGGGAGGGGGAASGPAAGTPS 59
A G A PAA PA+ + P V P K GA GG GP P
Sbjct: 537 AGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPG 596
Query: 60 APGSRTPGNPATAVSGTPAPPARSQ 84
G + A V T PP Q
Sbjct: 597 PAGPTRQASQAGPVPRT-GPPTTQQ 620
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 54.7 bits (130), Expect = 1e-07
Identities = 79/339 (23%), Positives = 106/339 (31%), Gaps = 36/339 (10%)
Query: 33 PAGEPQKGGGAGGGGGAASGPAAGTPSAPGSRTPGNP-----------ATAVSGTPAPPA 81
P G P +GG G P P SR+P +P G P PP
Sbjct: 78 PQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPG 137
Query: 82 RSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDG 141
+ Q P + G G + D K + P + G
Sbjct: 138 KPQGPPPQGGNKPQGPPP---PGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQ-----GGN 189
Query: 142 ETVEFDVVEGE-KGAEATNVTGPGGVPVKGSRYAP-----NRRKSRRFIPRPPSVAPPPM 195
+ G+ +G P G P G P N+ +S R P P PPP
Sbjct: 190 QPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQ-GPPPQ 248
Query: 196 VAEIPSAGTGPGSKGERAEDSGQRPRRWCPPPFFYRRRFVRGPRPP-NQQQPIEGTDRVE 254
P P K + G + PPP +GP P + + +
Sbjct: 249 GGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPP-----GKPQGPPPQGGSKSRSSRSPPGK 303
Query: 255 PKETAPLEGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEGGDGETKPSQGPADGS-R 313
P+ P G+Q QG PPP +P+ P Q P G P G S R
Sbjct: 304 PQGPPPQGGNQPQGP---PPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSAR 360
Query: 314 PEPQRPRNRPYFQRRRQQAPGPQQAPGPRQPAAPETSAP 352
P +P+ P + Q P P P+QP AP P
Sbjct: 361 SPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQP 399
Score = 45.1 bits (105), Expect = 1e-04
Identities = 58/224 (25%), Positives = 76/224 (33%), Gaps = 35/224 (15%)
Query: 163 PGGVPVKGSRYAP-----NRRKSRRFIPRPPSVAPPPMVAEIPSAGTGPGSKGERAEDSG 217
P G P G P N+ +S R P P PPP P P K + G
Sbjct: 150 PQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQ-GPPPQGGNQPQGPPPPPGKPQGPPPQG 208
Query: 218 QRPRRWCPPPFFYRRRFVRGPRPP--NQQQPIEGTDRVEPKETAPLEGHQQQGDE----- 270
+ PPP +GP P N+ Q +P+ P G+Q QG
Sbjct: 209 GNKPQGPPPP-----GKPQGPPPQGDNKSQSARSPPG-KPQGPPPQGGNQPQGPPPPPGK 262
Query: 271 -RVPPPRFRPRYRRPFRPRPRQQPTTEGGDGET-------KPSQGPADGSR------PEP 316
+ PPP+ + + P P Q P +GG KP P G P P
Sbjct: 263 PQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPP 322
Query: 317 QRPRNRPYFQRRRQQAPGPQQAP--GPRQPAAPETSAPVNSGDP 358
+P+ P + Q P P P P Q + SA G P
Sbjct: 323 GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKP 366
Score = 44.7 bits (104), Expect = 1e-04
Identities = 50/187 (26%), Positives = 70/187 (37%), Gaps = 24/187 (12%)
Query: 185 PRPPSV--APPPMVAEIPSAGTGPGSKGERAEDSGQRPRRWCPPPFFYR------RRFVR 236
P PP PPP + S + PG G +P+ PPP + +
Sbjct: 92 PPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQ 151
Query: 237 GPRPPNQQQ--PIEGTDRVEPKETAPLEGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPT 294
GP PP + Q P +G ++ + P G + PPP+ + + P P P +P
Sbjct: 152 GPPPPGKPQGPPPQGDNKSRSSRSPP-------GKPQGPPPQGGNQPQGP--PPPPGKPQ 202
Query: 295 TEGGDGETKPSQGPADGSRPEPQRPRNRPYFQRRRQQAPGPQQAPGPR---QPAAPETSA 351
G KP QGP +P+ P+ Q R PG Q P P+ QP P
Sbjct: 203 GPPPQGGNKP-QGPPPPGKPQGPPPQGDNKSQSAR-SPPGKPQGPPPQGGNQPQGPPPPP 260
Query: 352 PVNSGDP 358
G P
Sbjct: 261 GKPQGPP 267
Score = 42.7 bits (99), Expect = 5e-04
Identities = 73/325 (22%), Positives = 101/325 (31%), Gaps = 84/325 (25%)
Query: 33 PAGEPQKGGGAGGGGGAASGPAAGTPSAPGSRTPGNPATAVSGTPAPPARSQADKPVLAI 92
P G P +GG G + G G P G++ G P PP + Q P
Sbjct: 36 PQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQP--------QGPPPPPGKPQGPPP---- 83
Query: 93 QVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 152
Q K P + G +G+
Sbjct: 84 ------------------------------QGGNKPQGPPPPGKPQGPPP-------QGD 106
Query: 153 KGAEATNVTG-PGGVPVKGSRYAPNRRKSRRFIPRPPSVAPP-----PMVAEIPSAGTGP 206
K + G P G P +G N+ + P P PP P P GP
Sbjct: 107 KSRSPRSPPGKPQGPPPQGG----NQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGP 162
Query: 207 GSKGERAEDSGQRP--RRWCPPPFFYRRRFVRGPRPPNQQQPIEGTDRVEPKETAPLEGH 264
+G+ S + P + PPP +G P P G +P+ P G+
Sbjct: 163 PPQGDNKSRSSRSPPGKPQGPPP--------QGGNQPQGPPPPPG----KPQGPPPQGGN 210
Query: 265 QQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEGGDGETKPSQG--PADGSRPEPQRPRNR 322
+ QG PPP +P+ P Q + G + P QG G P P +P+
Sbjct: 211 KPQG----PPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP 266
Query: 323 PYFQRRRQQAPGPQQAPGPRQPAAP 347
P Q PQ P P +P P
Sbjct: 267 P-----PQGGNKPQGPPPPGKPQGP 286
Score = 41.6 bits (96), Expect = 0.001
Identities = 76/351 (21%), Positives = 109/351 (31%), Gaps = 80/351 (22%)
Query: 31 PVPAGEPQKGGGAGGGGGAASGPAAGTPSAPGSRTPGNPATAVSGTPAPPARSQADKPVL 90
P P G+PQ GG P G P P + P P PP + Q P
Sbjct: 51 PSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQ-----GPPPPGKPQGPPP-- 103
Query: 91 AIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVE 150
+ D ++ R+ P K +
Sbjct: 104 ---------------------QGD--------KSRSPRSPPGK---------------PQ 119
Query: 151 GEKGAEATNVTGPGGVPVKGSRYAPNRRKSRRFIPRP--PSVAPPPMVAEIPSAGTGPGS 208
G GP P K P + P P P PP + S+ + PG
Sbjct: 120 GPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGK 179
Query: 209 KGERAEDSGQRPRRWCPPPFFYR------RRFVRGPRPPNQQQ--PIEGTDRVE------ 254
G +P+ PPP + +GP PP + Q P +G ++ +
Sbjct: 180 PQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPP 239
Query: 255 --PKETAPLEGHQQQ------GDERVPPPRFRPRYRRPFRPRPRQQPTTEGGDGETKPSQ 306
P+ P G+Q Q G + PPP+ + + P P Q P +GG
Sbjct: 240 GKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRS 299
Query: 307 GPADGSRPEPQ---RPRNRPYFQRRRQQAP--GPQQAPGPRQPAAPETSAP 352
P P PQ +P+ P + Q P G + GP P P+ P
Sbjct: 300 PPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPP 350
Score = 33.9 bits (76), Expect = 0.23
Identities = 33/110 (30%), Positives = 43/110 (39%), Gaps = 23/110 (20%)
Query: 254 EPKETAPLEGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEGGDGETKPSQGPADG-- 311
+P+ P G+Q QG PPP +P Q P +GG+ KP P G
Sbjct: 56 KPQGPPPQGGNQPQGP---PPPPGKP-----------QGPPPQGGN---KPQGPPPPGKP 98
Query: 312 SRPEPQRPRNR-PYFQRRRQQAPGPQ---QAPGPRQPAAPETSAPVNSGD 357
P PQ ++R P + Q P PQ Q GP P P G+
Sbjct: 99 QGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGN 148
Score = 30.4 bits (67), Expect = 2.6
Identities = 29/110 (26%), Positives = 39/110 (35%), Gaps = 10/110 (9%)
Query: 253 VEPKETAPLEGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEGGDGETKPSQGPADGS 312
V +E+ L QG PP P P Q P +GG+ P P
Sbjct: 23 VSQEESPSLIAGNPQG---APPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQ 79
Query: 313 RPEPQ---RPRNRPYFQRRRQQAPGPQ--QAPGPRQPAAPETSAPVNSGD 357
P PQ +P+ P + Q P PQ ++ PR P P G+
Sbjct: 80 GPPPQGGNKPQGPP--PPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGN 127
Score = 29.3 bits (64), Expect = 5.8
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
Query: 33 PAGEPQKGGGAGGGGGAASGPAAGTPSAPGSRTPGNPATAVSGTPAPPARSQADKP 88
P G PQ+ G G PA G P P + G P G P PP + +P
Sbjct: 366 PQGPPQQEGNNPQG---PPPPAGGNPQQPQAPPAGQP----QGPPRPPQGGRPSRP 414
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 53.5 bits (127), Expect = 3e-07
Identities = 60/201 (29%), Positives = 77/201 (38%), Gaps = 38/201 (18%)
Query: 163 PGGVPVKGSRYAPNRRKSRRFIPRPP-SVAPPPMVAE----IPSAGTGPGSKGERAEDSG 217
P G P+ P R S P+ P S A PP + P AG GPG+ +
Sbjct: 499 PAGSPL------PQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAG-GPGAPPAARPPAS 551
Query: 218 QRPRRWCPPPFFYRRRFVRGPRPPNQQQPIEGTDRVEPKETAPLEGHQQQGDERVPP-PR 276
P+R PP R+ V GP PP AP G Q+QG + PP P
Sbjct: 552 PSPQRQAGPPQATRQTSVSGPAPPK-------------ASGAPPGGQQRQGPPQKPPGPA 598
Query: 277 FRPRYRRPFRPRPRQQPTTEGGDGETKPSQGPADGSRPEPQRPRNRPYFQRRRQQAPGPQ 336
R P PR P T + +PS GP RP+PQ Q+ Q P P
Sbjct: 599 GPTRQASQAGPVPRTGPPT---TQQPRPS-GPGPAGRPKPQ------LAQKPSQDVPPPA 648
Query: 337 QAP--GPRQPAAPETSAPVNS 355
A GP P ++ + N+
Sbjct: 649 TAAAGGPPHPQLNKSQSLTNA 669
Score = 50.4 bits (119), Expect = 2e-06
Identities = 53/209 (25%), Positives = 73/209 (34%), Gaps = 24/209 (11%)
Query: 164 GGVPVKGSRYAPNRRKSRRFIPRPPSVAPPPMVAEIPSAGTGPGSKG----ERAEDSGQR 219
G P G+ P R++ + PP+ PP P G GP +G +R GQ+
Sbjct: 434 GQTPSPGA--LPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGPPLQQRPPPQGQQ 491
Query: 220 PRRWCPPPFFYRRRFVRGPRPPNQQQPIEGTDRVEPKETAPLEGHQQQGDERVPPPRFRP 279
PP P P P + + P +G +Q P P
Sbjct: 492 HLSGLGPP-------AGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPP 544
Query: 280 RYRRPFRPRPRQQP--------TTEGGDGETKPSQGPADGSRPE--PQRPRNRPYFQRRR 329
R P P P++Q T+ G K S P G + + PQ+P R+
Sbjct: 545 AARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQA 604
Query: 330 QQAPGPQQAPGPRQPAAPETSAPVNSGDP 358
QA GP GP P S P +G P
Sbjct: 605 SQA-GPVPRTGPPTTQQPRPSGPGPAGRP 632
Score = 37.7 bits (86), Expect = 0.016
Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 287 PRPRQQPTTEG-GDGETKPSQGPADGSRPEPQRPRNRPYFQRRRQQAPGPQQAPGPRQPA 345
PR RQ+ + G G PS G R Q+P P QR Q PQ PGP++
Sbjct: 419 PRQRQRDASPGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQG 478
Query: 346 APETSAPVNSG 356
P P G
Sbjct: 479 PPLQQRPPPQG 489
Score = 37.0 bits (84), Expect = 0.028
Identities = 35/120 (29%), Positives = 47/120 (39%), Gaps = 15/120 (12%)
Query: 252 RVEPKETAPLEGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEGGDGETKPS---QGP 308
R ++ +P G Q P R ++P P +Q+P +GG + P QGP
Sbjct: 420 RQRQRDASPGRGSHGQTPSPGALPLGRQTSQQPAGPPAQQRPPPQGGPPQPGPGPQRQGP 479
Query: 309 ADGSRPEPQRPRN-----RPYFQRRRQQAPGPQQAP-GPRQPAAPET------SAPVNSG 356
RP PQ ++ P Q+ P P AP P AAP T S PV G
Sbjct: 480 PLQQRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGG 539
Score = 32.3 bits (72), Expect = 0.68
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 19/74 (25%)
Query: 30 VPVPAGEPQKGGGAGG----GGGAASGPAAGTPSA-PGSRTPGNPA-------------T 71
+P P PQ+ G G S P AG P A P +R P +P+ T
Sbjct: 508 LPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQT 567
Query: 72 AVSGTPAPPARSQA 85
+VSG PAPP S A
Sbjct: 568 SVSG-PAPPKASGA 580
Score = 28.5 bits (62), Expect = 9.9
Identities = 26/85 (30%), Positives = 29/85 (34%), Gaps = 8/85 (9%)
Query: 7 AAGATAVPAATVPATAAGVVAVVVP-------VPAGEPQKGGGAGGGGGAASGPAAGTPS 59
A G A PAA PA+ + P V P K GA GG GP P
Sbjct: 537 AGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPG 596
Query: 60 APGSRTPGNPATAVSGTPAPPARSQ 84
G + A V T PP Q
Sbjct: 597 PAGPTRQASQAGPVPRT-GPPTTQQ 620
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 53.1 bits (126), Expect = 4e-07
Identities = 92/392 (23%), Positives = 121/392 (30%), Gaps = 76/392 (19%)
Query: 9 GATAVPAATVPATAAGVVAVVVPVPAGEPQKGGGAGGG--GGAASGPAAGTPSAPGSRTP 66
GA PAAT P+ G P P G P GG A+ P G P+ P + P
Sbjct: 1078 GAPTPPAATPPSPKGGPAT---PSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPP 1134
Query: 67 ------------GNPATAVSGTPAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRND 114
G P T + TP P A P + + G +
Sbjct: 1135 SPKGGLATPPPKGAPTTPAA-TPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKG 1193
Query: 115 TKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGP----GGVPVKG 170
A +P+ L + KGA T P GG+
Sbjct: 1194 APTT-----PAATPPSPKGGLAT------------PSPKGAPTTPAATPPSPKGGLATPS 1236
Query: 171 SRYAPNRRKSRRFIPRPPSVAPPPMVAEIPSAGTGPGSKGERAEDSGQRPRRWCPPPFFY 230
+ AP + P+ PPP A P A T P KG A P + P P
Sbjct: 1237 PKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATP----PHKGAPNP--- 1289
Query: 231 RRRFVRGPRPPN--QQQPIEGTDRVEPKETAPLEGHQQQGDERVPPPRFRPRYRRPFRPR 288
V P P P +G P T P +G PPP+ P P
Sbjct: 1290 --AVVTPPSPKGGPATSPPKGAP-TPPAATPP----SPKGSPGTPPPKGAPTPPAVTPPS 1342
Query: 289 PRQQPT-------TEGG-------DGETKPSQGPADGSRP--EPQRPRNRPYFQRRRQQA 332
P+ PT ++GG +G T P+ P+ P P P+ P +
Sbjct: 1343 PKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDP 1402
Query: 333 PGPQQAP-----GPRQPAAPETSAPVNSGDPT 359
P P P P E +A + GD T
Sbjct: 1403 TSPAVIPLSPKKAPATPVTREGAATPSKGDLT 1434
Score = 44.7 bits (104), Expect = 1e-04
Identities = 85/364 (23%), Positives = 110/364 (30%), Gaps = 56/364 (15%)
Query: 9 GATAVPAATVPATAAGVVAVVVPVPAGEPQKGGGAGGGGGAASGPAAGTPSAPGSRTP-- 66
GA PAAT P+ G A P A P GG A+ G P+ P + P
Sbjct: 938 GAPTPPAATPPSPKGGP-ATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSP 996
Query: 67 -GNPAT-AVSGTPAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQT 124
G PAT + G P PPA + K
Sbjct: 997 KGGPATPSPKGAPTPPA----------------------------VTPPSPKGSPAATPF 1028
Query: 125 AIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGS-RYAPNRRKSRRF 183
+ P G + +G A + P G P S + AP +
Sbjct: 1029 PKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPP 1088
Query: 184 IPRPPSVAPPPMVAEIPSAGTGPGSKGERAEDSGQRPRRWCPPPFFYRRRFVRG--PRPP 241
P+ P P A +P A T P KG A P + P +G PP
Sbjct: 1089 SPKGGPATPSPKGAPMPPAATPPSPKGGLATP----PHKGAPTTPAATPPSPKGGLATPP 1144
Query: 242 NQQQPIEGTDRVEPKETAPLEGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEGGDG- 300
+ P P T P +G PPP+ P P P+ T G
Sbjct: 1145 PKGAP------TTPAATPP----SPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGA 1194
Query: 301 ETKPSQGPAD--GSRPEPQRPRNRPYFQRRRQQAP-GPQQAPGPR-QPAAPETSAPVNSG 356
T P+ P G P P+ P +P G P P+ P P + P G
Sbjct: 1195 PTTPAATPPSPKGGLATPS-PKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKG 1253
Query: 357 DPTT 360
P T
Sbjct: 1254 GPAT 1257
Score = 39.7 bits (91), Expect = 0.004
Identities = 52/229 (22%), Positives = 73/229 (31%), Gaps = 35/229 (15%)
Query: 150 EGEKGAEATNVT----GPGGVPVKGSRYAPNRRKSRRFIPRPPSVAPPPMVAEIPSAGTG 205
+G K + AT + P G P S P K + PP P P V +P G
Sbjct: 844 QGSKDSPATTHSPTPPSPKGAPTP-SAVTPLSPKG---VTLPPKETPTPSVVNLPFPKEG 899
Query: 206 PGSKGER------AEDSGQRPRRWCPPPFFYRRRFVRGPRPPNQQQPIEGTDRVEPKETA 259
P + + S + R P P + P P P P T
Sbjct: 900 PATPAPKQAPALSMTSSSPKKARATPAP----KGIPASPSPKGAPTP--------PAATP 947
Query: 260 PLEGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEGGDGETKP--SQGPADGSRPEPQ 317
P +G P P++ P P P+ P T G P + P+ P
Sbjct: 948 P----SPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATP 1003
Query: 318 RPRNRPYFQRRRQQAP--GPQQAPGPRQPAAPETSAPVN-SGDPTTTIL 363
P+ P +P P P P+ + P + P + G P T L
Sbjct: 1004 SPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGSPAATPL 1052
Score = 38.1 bits (87), Expect = 0.012
Identities = 50/216 (23%), Positives = 65/216 (30%), Gaps = 20/216 (9%)
Query: 153 KGAEATNVTGP----GGVPVKGSRYAPNRRKSRRFIPRPPSVAPPPMVAEIPSAGTGPGS 208
KGA T P GG+ + AP + P+ PPP A A T P
Sbjct: 1123 KGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSP 1182
Query: 209 KGERAEDSGQRPRRWCPPPFFYRRRFVRGPRPPNQQQPIEGTDRVEPKETAPLEGHQQQG 268
KG A S P+ P PP+ + + T +G
Sbjct: 1183 KGGLATPS---PKGAPTTP---------AATPPSPKGGLATPSPKGAPTTPAATPPSPKG 1230
Query: 269 DERVPPPRFRPRYRRPFRPRPRQQPTTEGGDG-ETKPSQGPAD---GSRPEPQRPRNRPY 324
P P+ P P P+ P T G T P+ P G P + P
Sbjct: 1231 GLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPA 1290
Query: 325 FQRRRQQAPGPQQAPGPRQPAAPETSAPVNSGDPTT 360
GP +P P P + P G P T
Sbjct: 1291 VVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGT 1326
Score = 33.5 bits (75), Expect = 0.31
Identities = 27/74 (36%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 10 ATAVPAAT-VPATAAGVVAVVVPVPAGEPQKGGGAGGGGGAASGPAAGTPSAPGSRTPGN 68
A A PA +PA+ + A P KGG A A P A TP +P G
Sbjct: 921 ARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSP----KGG 976
Query: 69 PAT-AVSGTPAPPA 81
PAT + G P PPA
Sbjct: 977 PATPSPKGAPTPPA 990
Score = 31.2 bits (69), Expect = 1.5
Identities = 76/351 (21%), Positives = 102/351 (29%), Gaps = 85/351 (24%)
Query: 19 PATAAGVVAVVVPVPAGEPQKGGGAGGGGGAASGPAAGTPSAPGSRTPGNPATAVSGTPA 78
PAT A A + + + P+K G + P+ P + TP +P G PA
Sbjct: 900 PATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSP----KGGPA 955
Query: 79 PPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSV 138
P+ A P A + P S
Sbjct: 956 TPSPKWAPTPPAA-------------------------------TPPSPKGGPA--TPSP 982
Query: 139 GDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRKSRRFIPRPPSVAPPPMVAE 198
T KG AT P G P + P+ + S P+ P P A
Sbjct: 983 KGAPTPPAATPPSPKGGPAT--PSPKGAPTPPAVTPPSPKGS-------PAATPFPKGAS 1033
Query: 199 IPSAGTGPGSKGERA-----EDSGQRPRRWCPPPFFYRRRFVRGPRPPNQQQPIEGTDRV 253
P A T P KG A + + P P P GP P+ ++G
Sbjct: 1034 TPPAATPPSPKGSPAATPLPKGAPTTPAATLPSP-------KGGPATPS----LKGAP-T 1081
Query: 254 EPKETAPLEGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEGGDGETKPSQGPADGSR 313
P T P +G P P+ P P P + G T P +G
Sbjct: 1082 PPAATPP----SPKGGPATPSPKGAPM-------PPAATPPSPKGGLATPPHKG------ 1124
Query: 314 PEPQRPRNRPYFQRRRQQAPGPQQAPGPRQPAAPE----TSAPVNSGDPTT 360
P P P + P P+ AP P + P G PTT
Sbjct: 1125 -APTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTT 1174
>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 51.2 bits (121), Expect = 1e-06
Identities = 54/193 (27%), Positives = 71/193 (36%), Gaps = 32/193 (16%)
Query: 163 PGGVPVKGSRYAPNRRKSRRFIPRPPSVAPPPMVAEIPSAGTGPGSKGERAEDSGQRPRR 222
P P +R P R +R +P + PP A + G S ER++ +RPRR
Sbjct: 59 PSPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQP--RRPRR 116
Query: 223 WCPPPFFYRRRFVRGPRPPNQQQPIEGTDRVEPKETAPLEGHQQQGDERVPPPRFRPRYR 282
PPP P + +P G R E APL ++ G R R
Sbjct: 117 --PPP------------APRRPRPAPGR-RKSLYEAAPLLTREKGG-------RSGRRGD 154
Query: 283 RPFRPRPRQQPTTEGGDGETKP--------SQGPADGSRPEPQRPRNRPYFQRRRQQAPG 334
R GG G++ S+G G EP+R R +P QR AP
Sbjct: 155 RGGSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPT 214
Query: 335 PQQAPGPRQPAAP 347
PR PAAP
Sbjct: 215 YSPRSDPRDPAAP 227
Score = 28.5 bits (62), Expect = 9.9
Identities = 27/78 (34%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 6 AAAGATAVPAATVPATAAGVVAVVVPVPAGEPQK-GGGAGGGGGAASGPAAGTPSAPGSR 64
A + A A+PA P AV G P++ GG GG AASG P P R
Sbjct: 58 APSPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRP--R 115
Query: 65 TPGNPATAVSGTPAPPAR 82
P P PAP R
Sbjct: 116 RP--PPAPRRPRPAPGRR 131
>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 51.2 bits (121), Expect = 1e-06
Identities = 54/193 (27%), Positives = 71/193 (36%), Gaps = 32/193 (16%)
Query: 163 PGGVPVKGSRYAPNRRKSRRFIPRPPSVAPPPMVAEIPSAGTGPGSKGERAEDSGQRPRR 222
P P +R P R +R +P + PP A + G S ER++ +RPRR
Sbjct: 59 PSPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQP--RRPRR 116
Query: 223 WCPPPFFYRRRFVRGPRPPNQQQPIEGTDRVEPKETAPLEGHQQQGDERVPPPRFRPRYR 282
PPP P + +P G R E APL ++ G R R
Sbjct: 117 --PPP------------APRRPRPAPGR-RKSLYEAAPLLTREKGG-------RSGRRGD 154
Query: 283 RPFRPRPRQQPTTEGGDGETKP--------SQGPADGSRPEPQRPRNRPYFQRRRQQAPG 334
R GG G++ S+G G EP+R R +P QR AP
Sbjct: 155 RGGSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPT 214
Query: 335 PQQAPGPRQPAAP 347
PR PAAP
Sbjct: 215 YSPRSDPRDPAAP 227
Score = 28.5 bits (62), Expect = 9.9
Identities = 27/78 (34%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 6 AAAGATAVPAATVPATAAGVVAVVVPVPAGEPQK-GGGAGGGGGAASGPAAGTPSAPGSR 64
A + A A+PA P AV G P++ GG GG AASG P P R
Sbjct: 58 APSPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRP--R 115
Query: 65 TPGNPATAVSGTPAPPAR 82
P P PAP R
Sbjct: 116 RP--PPAPRRPRPAPGRR 131
>gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 51.2 bits (121), Expect = 1e-06
Identities = 54/193 (27%), Positives = 71/193 (36%), Gaps = 32/193 (16%)
Query: 163 PGGVPVKGSRYAPNRRKSRRFIPRPPSVAPPPMVAEIPSAGTGPGSKGERAEDSGQRPRR 222
P P +R P R +R +P + PP A + G S ER++ +RPRR
Sbjct: 59 PSPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQP--RRPRR 116
Query: 223 WCPPPFFYRRRFVRGPRPPNQQQPIEGTDRVEPKETAPLEGHQQQGDERVPPPRFRPRYR 282
PPP P + +P G R E APL ++ G R R
Sbjct: 117 --PPP------------APRRPRPAPGR-RKSLYEAAPLLTREKGG-------RSGRRGD 154
Query: 283 RPFRPRPRQQPTTEGGDGETKP--------SQGPADGSRPEPQRPRNRPYFQRRRQQAPG 334
R GG G++ S+G G EP+R R +P QR AP
Sbjct: 155 RGDSGWSHGHTARVGGTGDSSAGLTTFPGSSRGGFSGREEEPRRERRQPSLQRSTPPAPT 214
Query: 335 PQQAPGPRQPAAP 347
PR PAAP
Sbjct: 215 YSPRSDPRDPAAP 227
Score = 28.5 bits (62), Expect = 9.9
Identities = 27/78 (34%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 6 AAAGATAVPAATVPATAAGVVAVVVPVPAGEPQK-GGGAGGGGGAASGPAAGTPSAPGSR 64
A + A A+PA P AV G P++ GG GG AASG P P R
Sbjct: 58 APSPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASGEERSQPRRP--R 115
Query: 65 TPGNPATAVSGTPAPPAR 82
P P PAP R
Sbjct: 116 RP--PPAPRRPRPAPGRR 131
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 50.1 bits (118), Expect = 3e-06
Identities = 46/158 (29%), Positives = 63/158 (39%), Gaps = 22/158 (13%)
Query: 198 EIPSAGTGPGSKGERAEDSGQRPRRWCPPPFFYRRRFVRGPRPPNQQQPIEGTDRVE--- 254
E PS GP S +G P PPP + PRP ++ P G +
Sbjct: 871 EEPSGPRGPSSGHPLKSKAGVTPESKAPPPLPAATPDPQTPRPGDRGCPARGRPKTRSLG 930
Query: 255 --PKET-APLEGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEGGDGET---KPSQGP 308
P E AP +G QQ+ +++ +R+ + + GG G +P +
Sbjct: 931 LAPTEADAPSQGRQQRRGKQLK------LFRKDLDSGGAAEGSGSGGGGRASGLRPRRND 984
Query: 309 ADGSRPEPQRPRNRPYFQRRRQQAPGPQQAPGPRQPAA 346
G RP P RPR R R QAPG + P PR P A
Sbjct: 985 GLGERPPP-RPR------RPRTQAPGSRADPAPRVPRA 1015
Score = 35.4 bits (80), Expect = 0.081
Identities = 52/215 (24%), Positives = 80/215 (37%), Gaps = 35/215 (16%)
Query: 152 EKGAEATNVTGPGGVPVKGSRYAPNRRKSRRFIPRPPSVAPPPMVAEIPSAGTGPGSKGE 211
+ G A GG G R N R PRP + P + P +
Sbjct: 959 DSGGAAEGSGSGGGGRASGLRPRRNDGLGERPPPRPRRPR-----TQAPGSRADPAPRVP 1013
Query: 212 RA----EDSGQRPRRWCPPPFFYRRRFVRGPRPPNQQ--QPIEGTDRVEPKETAPLEGHQ 265
RA E++ RR PP R+R RG + + ++ +R+ + A +
Sbjct: 1014 RAAALPEETRSSRRRRLPPRKDPRKRKARGGAWGKELILKIVQQKNRLREYDFAS----E 1069
Query: 266 QQGDERVPP--PRFRPRYRRPFRPRPRQQPTTEGGDGETKPSQGPADGSRPEPQRPRNRP 323
+ DE+ PP P FR R R + + E + +QGP + EPQ+PR
Sbjct: 1070 SEEDEQPPPRGPGFRGRRGRGEKRK------------EVELTQGPRED---EPQKPRKAA 1114
Query: 324 YFQRRRQQAPGPQQAPGPRQPA---APETSAPVNS 355
+ AP + PG +P +P+ P S
Sbjct: 1115 RQEAGGDGAPANPEEPGGSRPGPGRSPQARGPSRS 1149
Score = 32.3 bits (72), Expect = 0.68
Identities = 45/173 (26%), Positives = 62/173 (35%), Gaps = 35/173 (20%)
Query: 217 GQRPRRWCPPPF---FYRRRFVRGPRPPNQQQPIEGTDRVEPKETAPLEGHQQQGDERVP 273
G+RPR PP R+ P P+Q + T + A G Q Q E
Sbjct: 3 GERPRGAPPPTMTGDLQPRQVASSPGHPSQPPLEDNTPATRTTKGAREAGGQAQAMEL-- 60
Query: 274 PPRFRPRYRRPFRPRPR----QQPTT---EGGDGETKPSQGP----------ADGSRPEP 316
P +PR R +P Q P++ + G +T P + P A+GS P+
Sbjct: 61 -PEAQPRQARDGELKPPSLRGQAPSSTPGKRGSPQTPPGRSPLQAPSRLAGRAEGSPPQR 119
Query: 317 Q-----RPRNRPYFQRRRQQAPGPQ----QAPGPRQPAAPETSAPVNSGDPTT 360
R +P + PQ Q P P P T AP+ G P T
Sbjct: 120 YILGIASSRTKPTLDETPEN---PQLEAAQLPEVDTPQGPGTGAPLRPGLPRT 169
Score = 31.2 bits (69), Expect = 1.5
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 31 PVPAGEPQKGGGAGGGGGAASGPAAGTPSAPGSRTPGNPATAVSGTPAP---PARSQA 85
P G G GGG+ PA+G + + TP P+ S +PAP PAR+QA
Sbjct: 3702 PSSQGSGSPRPGTKTGGGSQPQPASGQLQSETATTPAKPSFP-SRSPAPERLPARAQA 3758
Score = 28.5 bits (62), Expect = 9.9
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 283 RPFRPRPRQQPTTEGGDGETKPSQGPADGSRPEPQRPR---------NRPYFQRRRQQAP 333
+P P+ + P+++G G +P GS+P+P + +P F R +P
Sbjct: 3692 KPATPKAKPGPSSQGS-GSPRPGTKTGGGSQPQPASGQLQSETATTPAKPSFPSR---SP 3747
Query: 334 GPQQAPGPRQPAAPETSAPVNSGD 357
P++ P R A T P +G+
Sbjct: 3748 APERLPA-RAQAKSCTKGPREAGE 3770
>gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo
sapiens]
Length = 828
Score = 49.3 bits (116), Expect = 5e-06
Identities = 65/224 (29%), Positives = 83/224 (37%), Gaps = 35/224 (15%)
Query: 150 EGEKGAEATNVTGPGGVPVKGSRYAPNRRKSRRFIPRPPSVAPPPMVAEIPSAGTGPGS- 208
+G KG + N PG VKG++ P PR P P P PGS
Sbjct: 390 KGSKGYQG-NSGAPGSPGVKGAKGGPG--------PRGPKGEPGRRGD--PGTKGSPGSD 438
Query: 209 --KGERAEDSGQRPRRWCPP---PFFYRRRFVRGPRPPNQQ--QPIEGTDRVEPKETAPL 261
KGE+ + + PR R + GPR P +P + R +P + P
Sbjct: 439 GPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGP- 497
Query: 262 EGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEGGDGETKPSQGPAD-GSRPEPQRPR 320
+GD P P+ P P PR P +G G P G D G + EP R
Sbjct: 498 -----RGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRGDFGLKGEPGRKG 552
Query: 321 NRPYFQRRRQQAPGPQQAPGPRQP---AAPETSAPVNSGDPTTT 361
++ PGP PGPR P PE P GDP T
Sbjct: 553 -----EKGEPADPGPPGEPGPRGPRGVPGPE-GEPGPPGDPGLT 590
>gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo
sapiens]
Length = 918
Score = 49.3 bits (116), Expect = 5e-06
Identities = 65/224 (29%), Positives = 83/224 (37%), Gaps = 35/224 (15%)
Query: 150 EGEKGAEATNVTGPGGVPVKGSRYAPNRRKSRRFIPRPPSVAPPPMVAEIPSAGTGPGS- 208
+G KG + N PG VKG++ P PR P P P PGS
Sbjct: 390 KGSKGYQG-NSGAPGSPGVKGAKGGPG--------PRGPKGEPGRRGD--PGTKGSPGSD 438
Query: 209 --KGERAEDSGQRPRRWCPP---PFFYRRRFVRGPRPPNQQ--QPIEGTDRVEPKETAPL 261
KGE+ + + PR R + GPR P +P + R +P + P
Sbjct: 439 GPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGP- 497
Query: 262 EGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEGGDGETKPSQGPAD-GSRPEPQRPR 320
+GD P P+ P P PR P +G G P G D G + EP R
Sbjct: 498 -----RGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRGDFGLKGEPGRKG 552
Query: 321 NRPYFQRRRQQAPGPQQAPGPRQP---AAPETSAPVNSGDPTTT 361
++ PGP PGPR P PE P GDP T
Sbjct: 553 -----EKGEPADPGPPGEPGPRGPRGVPGPE-GEPGPPGDPGLT 590
>gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Homo
sapiens]
Length = 1019
Score = 49.3 bits (116), Expect = 5e-06
Identities = 65/224 (29%), Positives = 83/224 (37%), Gaps = 35/224 (15%)
Query: 150 EGEKGAEATNVTGPGGVPVKGSRYAPNRRKSRRFIPRPPSVAPPPMVAEIPSAGTGPGS- 208
+G KG + N PG VKG++ P PR P P P PGS
Sbjct: 390 KGSKGYQG-NSGAPGSPGVKGAKGGPG--------PRGPKGEPGRRGD--PGTKGSPGSD 438
Query: 209 --KGERAEDSGQRPRRWCPP---PFFYRRRFVRGPRPPNQQ--QPIEGTDRVEPKETAPL 261
KGE+ + + PR R + GPR P +P + R +P + P
Sbjct: 439 GPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGPRGPQGALGEPGKQGSRGDPGDAGP- 497
Query: 262 EGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEGGDGETKPSQGPAD-GSRPEPQRPR 320
+GD P P+ P P PR P +G G P G D G + EP R
Sbjct: 498 -----RGDSGQPGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPEGGRGDFGLKGEPGRKG 552
Query: 321 NRPYFQRRRQQAPGPQQAPGPRQP---AAPETSAPVNSGDPTTT 361
++ PGP PGPR P PE P GDP T
Sbjct: 553 -----EKGEPADPGPPGEPGPRGPRGVPGPE-GEPGPPGDPGLT 590
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 49.3 bits (116), Expect = 5e-06
Identities = 91/378 (24%), Positives = 123/378 (32%), Gaps = 77/378 (20%)
Query: 6 AAAGATAVPAATVPATAAGVVAVVVPVPAG--EPQKGGGAGGGGGAASGPAAGTPSAPGS 63
AAA A P TV AV P+P G +PQ A P A TP A
Sbjct: 609 AAATGEAAPVLTVQPAPQAPPAVSTPLPLGLQQPQ----------AQQPPQAPTPQAAA- 657
Query: 64 RTPGNPATAVSGTPAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQ 123
P A + P+P S +K VL T ++ Q
Sbjct: 658 -----PPQATTPQPSPGLASSPEKIVLGQPPSATPTAILTQDSL---------------Q 697
Query: 124 TAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRKSRRF 183
+ + ++ L + G +V V+ P KG+ P S+
Sbjct: 698 MFLPQERSQQPLSAEGPHLSVPASVIVS--APPPAQDPAPATPVAKGAGLGPQAPDSQA- 754
Query: 184 IPRPPSVAPPPMV-AEIPSAGTGPGSKGERAEDS--GQRPRRWCPPPFFYRRRFVRGP-R 239
S AP P + A P G GP S + G P P P R P R
Sbjct: 755 -----SPAPAPQIPAAAPLKGPGPSSSPSLPHQAPLGDSPHLPSPHP-------TRPPSR 802
Query: 240 PPNQQQPIEGTDRVEPKETAP-------LEG-HQQQGDERVPPPRFRPRYRRPFRPRPRQ 291
PP++ Q + P P L G Q VPPP P P P+P
Sbjct: 803 PPSRPQSVSRPPSEPPLHPCPPPQAPPTLPGIFVIQNQLGVPPPASNPAPTAPGPPQPPL 862
Query: 292 QPTTEGGDGETKP---------SQGPADGSRPEPQRPRNRPY-FQRRRQQAPGPQQAPGP 341
+P ++ +G P S A S + P P FQ + + GP ++P P
Sbjct: 863 RPQSQPPEGPLPPAPHLPPSSTSSAVASSSETSSRLPAPTPSDFQLQFPPSQGPHKSPTP 922
Query: 342 -------RQPAAPETSAP 352
+PAAP P
Sbjct: 923 PPTLHLVPEPAAPPPPPP 940
>gi|126090909 engrailed homeobox 1 [Homo sapiens]
Length = 392
Score = 48.9 bits (115), Expect = 7e-06
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 13/92 (14%)
Query: 6 AAAGATAVPA---ATVPATAAGVVAVVVPVPAGEPQKGGGAGGGGGAASGPAAGTPSAPG 62
AAAGA A A A A AA VA A +P GG G GGG AG+P A G
Sbjct: 186 AAAGAGASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGG------AGSPGAQG 239
Query: 63 SRTP--GNPATAVSGTP--APPARSQADKPVL 90
++ P GNPA + G+ P ++ + +P++
Sbjct: 240 TKYPEHGNPAILLMGSANGGPVVKTDSQQPLV 271
>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 48.9 bits (115), Expect = 7e-06
Identities = 63/225 (28%), Positives = 81/225 (36%), Gaps = 32/225 (14%)
Query: 147 DVVEGEKGAEATNVTGPGG-VPVKGSRYAPNRRKSRRFIPRPPSVAPPPMVAEIPSAGTG 205
DV + AEAT + P KGS PN F PR V PPP S
Sbjct: 261 DVALNGRQAEATRASPPRSPAEPKGSALGPNPEPHLTF-PRSFKV-PPPTPVRTSSIPVQ 318
Query: 206 PGSKGERAEDSGQR--PRRWCPPPFFYRRRFVRGPRPPNQQQPIEGTDRVEP---KETAP 260
+ R E+ + P R PP F+ R P +Q P + P K TAP
Sbjct: 319 EAQEAPRKEEGATKKAPSRLPLPPSFHIR-------PASQVYPDRAPEPDCPGELKATAP 371
Query: 261 ----LEGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEGGDGETKPSQGPADGSRPEP 316
L Q Q DER P P P P P P PA P
Sbjct: 372 ASPRLGQSQSQADERAGTPPPAPPLPPPAPPLPPPAPPLP-----------PAAPPLPCA 420
Query: 317 QRPRNRP--YFQRRRQQAPGPQQAPGPRQPAAPETSAPVNSGDPT 359
Q+ + P + + + +P + P P P +SAPV+ DP+
Sbjct: 421 QKAAHPPAGFTKTPKSSSPALKPKPNPPSPENTASSAPVDWRDPS 465
Score = 30.0 bits (66), Expect = 3.4
Identities = 49/203 (24%), Positives = 65/203 (32%), Gaps = 43/203 (21%)
Query: 185 PRPPSVAP----------PPMVAEIPSAGTGPGSKGERAEDSGQRPRRWCPPPFFYRRRF 234
P PPS+AP PP PS T P + P PPP
Sbjct: 181 PPPPSMAPPPPPVLEALSPPHTLSSPSIPTPPDFIPPAPPLAFLAPP---PPP------- 230
Query: 235 VRGPRPPNQQQPIEGTDRVEP-------KETAPLEGHQQQGDERVPP------------- 274
V P PP P R+ P K L G Q + PP
Sbjct: 231 VPAPAPPAPASPHTVGTRLFPPGGVTKWKSDVALNGRQAEATRASPPRSPAEPKGSALGP 290
Query: 275 -PRFRPRYRRPFR-PRPRQQPTTEGGDGETKPSQGPADG-SRPEPQRPRNRPYFQRRRQQ 331
P + R F+ P P T+ E + + +G ++ P R P F R
Sbjct: 291 NPEPHLTFPRSFKVPPPTPVRTSSIPVQEAQEAPRKEEGATKKAPSRLPLPPSFHIRPAS 350
Query: 332 APGPQQAPGPRQPAAPETSAPVN 354
P +AP P P + +AP +
Sbjct: 351 QVYPDRAPEPDCPGELKATAPAS 373
Score = 30.0 bits (66), Expect = 3.4
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 4 VEAAAG-ATAVPAATVPATAAGVVAVVVPVPAGEPQKGGGAGGGGGAASGPAAGTPSAPG 62
++A +G A A A T+P T + ++A PAG+P+K PA+ S P
Sbjct: 683 LKATSGPAIASTATTLPTTTSQLMAEKDSGPAGQPEK-------------PASQEVSTPS 729
Query: 63 -SRTPGNPATAVSGTPAPPARSQADKP 88
+R G+P+ A + P ARS A P
Sbjct: 730 QARGEGSPSEA-TRLPTQGARSSAAFP 755
>gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 48.9 bits (115), Expect = 7e-06
Identities = 63/225 (28%), Positives = 81/225 (36%), Gaps = 32/225 (14%)
Query: 147 DVVEGEKGAEATNVTGPGG-VPVKGSRYAPNRRKSRRFIPRPPSVAPPPMVAEIPSAGTG 205
DV + AEAT + P KGS PN F PR V PPP S
Sbjct: 261 DVALNGRQAEATRASPPRSPAEPKGSALGPNPEPHLTF-PRSFKV-PPPTPVRTSSIPVQ 318
Query: 206 PGSKGERAEDSGQR--PRRWCPPPFFYRRRFVRGPRPPNQQQPIEGTDRVEP---KETAP 260
+ R E+ + P R PP F+ R P +Q P + P K TAP
Sbjct: 319 EAQEAPRKEEGATKKAPSRLPLPPSFHIR-------PASQVYPDRAPEPDCPGELKATAP 371
Query: 261 ----LEGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEGGDGETKPSQGPADGSRPEP 316
L Q Q DER P P P P P P PA P
Sbjct: 372 ASPRLGQSQSQADERAGTPPPAPPLPPPAPPLPPPAPPLP-----------PAAPPLPCA 420
Query: 317 QRPRNRP--YFQRRRQQAPGPQQAPGPRQPAAPETSAPVNSGDPT 359
Q+ + P + + + +P + P P P +SAPV+ DP+
Sbjct: 421 QKAAHPPAGFTKTPKSSSPALKPKPNPPSPENTASSAPVDWRDPS 465
Score = 30.0 bits (66), Expect = 3.4
Identities = 49/203 (24%), Positives = 65/203 (32%), Gaps = 43/203 (21%)
Query: 185 PRPPSVAP----------PPMVAEIPSAGTGPGSKGERAEDSGQRPRRWCPPPFFYRRRF 234
P PPS+AP PP PS T P + P PPP
Sbjct: 181 PPPPSMAPPPPPVLEALSPPHTLSSPSIPTPPDFIPPAPPLAFLAPP---PPP------- 230
Query: 235 VRGPRPPNQQQPIEGTDRVEP-------KETAPLEGHQQQGDERVPP------------- 274
V P PP P R+ P K L G Q + PP
Sbjct: 231 VPAPAPPAPASPHTVGTRLFPPGGVTKWKSDVALNGRQAEATRASPPRSPAEPKGSALGP 290
Query: 275 -PRFRPRYRRPFR-PRPRQQPTTEGGDGETKPSQGPADG-SRPEPQRPRNRPYFQRRRQQ 331
P + R F+ P P T+ E + + +G ++ P R P F R
Sbjct: 291 NPEPHLTFPRSFKVPPPTPVRTSSIPVQEAQEAPRKEEGATKKAPSRLPLPPSFHIRPAS 350
Query: 332 APGPQQAPGPRQPAAPETSAPVN 354
P +AP P P + +AP +
Sbjct: 351 QVYPDRAPEPDCPGELKATAPAS 373
Score = 30.0 bits (66), Expect = 3.4
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 4 VEAAAG-ATAVPAATVPATAAGVVAVVVPVPAGEPQKGGGAGGGGGAASGPAAGTPSAPG 62
++A +G A A A T+P T + ++A PAG+P+K PA+ S P
Sbjct: 683 LKATSGPAIASTATTLPTTTSQLMAEKDSGPAGQPEK-------------PASQEVSTPS 729
Query: 63 -SRTPGNPATAVSGTPAPPARSQADKP 88
+R G+P+ A + P ARS A P
Sbjct: 730 QARGEGSPSEA-TRLPTQGARSSAAFP 755
>gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo
sapiens]
Length = 1188
Score = 48.9 bits (115), Expect = 7e-06
Identities = 63/225 (28%), Positives = 81/225 (36%), Gaps = 32/225 (14%)
Query: 147 DVVEGEKGAEATNVTGPGG-VPVKGSRYAPNRRKSRRFIPRPPSVAPPPMVAEIPSAGTG 205
DV + AEAT + P KGS PN F PR V PPP S
Sbjct: 261 DVALNGRQAEATRASPPRSPAEPKGSALGPNPEPHLTF-PRSFKV-PPPTPVRTSSIPVQ 318
Query: 206 PGSKGERAEDSGQR--PRRWCPPPFFYRRRFVRGPRPPNQQQPIEGTDRVEP---KETAP 260
+ R E+ + P R PP F+ R P +Q P + P K TAP
Sbjct: 319 EAQEAPRKEEGATKKAPSRLPLPPSFHIR-------PASQVYPDRAPEPDCPGELKATAP 371
Query: 261 ----LEGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEGGDGETKPSQGPADGSRPEP 316
L Q Q DER P P P P P P PA P
Sbjct: 372 ASPRLGQSQSQADERAGTPPPAPPLPPPAPPLPPPAPPLP-----------PAAPPLPCA 420
Query: 317 QRPRNRP--YFQRRRQQAPGPQQAPGPRQPAAPETSAPVNSGDPT 359
Q+ + P + + + +P + P P P +SAPV+ DP+
Sbjct: 421 QKAAHPPAGFTKTPKSSSPALKPKPNPPSPENTASSAPVDWRDPS 465
Score = 30.0 bits (66), Expect = 3.4
Identities = 49/203 (24%), Positives = 65/203 (32%), Gaps = 43/203 (21%)
Query: 185 PRPPSVAP----------PPMVAEIPSAGTGPGSKGERAEDSGQRPRRWCPPPFFYRRRF 234
P PPS+AP PP PS T P + P PPP
Sbjct: 181 PPPPSMAPPPPPVLEALSPPHTLSSPSIPTPPDFIPPAPPLAFLAPP---PPP------- 230
Query: 235 VRGPRPPNQQQPIEGTDRVEP-------KETAPLEGHQQQGDERVPP------------- 274
V P PP P R+ P K L G Q + PP
Sbjct: 231 VPAPAPPAPASPHTVGTRLFPPGGVTKWKSDVALNGRQAEATRASPPRSPAEPKGSALGP 290
Query: 275 -PRFRPRYRRPFR-PRPRQQPTTEGGDGETKPSQGPADG-SRPEPQRPRNRPYFQRRRQQ 331
P + R F+ P P T+ E + + +G ++ P R P F R
Sbjct: 291 NPEPHLTFPRSFKVPPPTPVRTSSIPVQEAQEAPRKEEGATKKAPSRLPLPPSFHIRPAS 350
Query: 332 APGPQQAPGPRQPAAPETSAPVN 354
P +AP P P + +AP +
Sbjct: 351 QVYPDRAPEPDCPGELKATAPAS 373
Score = 30.0 bits (66), Expect = 3.4
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 4 VEAAAG-ATAVPAATVPATAAGVVAVVVPVPAGEPQKGGGAGGGGGAASGPAAGTPSAPG 62
++A +G A A A T+P T + ++A PAG+P+K PA+ S P
Sbjct: 683 LKATSGPAIASTATTLPTTTSQLMAEKDSGPAGQPEK-------------PASQEVSTPS 729
Query: 63 -SRTPGNPATAVSGTPAPPARSQADKP 88
+R G+P+ A + P ARS A P
Sbjct: 730 QARGEGSPSEA-TRLPTQGARSSAAFP 755
>gi|38787970 tensin like C1 domain containing phosphatase isoform 3
[Homo sapiens]
Length = 1285
Score = 48.1 bits (113), Expect = 1e-05
Identities = 89/369 (24%), Positives = 121/369 (32%), Gaps = 88/369 (23%)
Query: 16 ATVPATAAGVVAVVVPVPAGEPQKGGGAGGGGGAASGPAAGTPSAPGSRTPGNPA----- 70
A V + G V P P G G G G S P A +P A GS +PG+P
Sbjct: 661 ALVTYSYGGAVPSYCPAYGRVPHSCGSPGEGRGYPS-PGAHSPRA-GSISPGSPPYPQSR 718
Query: 71 -------TAVSGTPAP-PARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVH 122
T G P P + P+ + + L V W +G+ + R+
Sbjct: 719 KLSYEIPTEEGGDRYPLPGHLASAGPLASAESLEPVSWREGPSGHSTLPRSP-------- 770
Query: 123 QTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRKSRR 182
R+ P + ++ ++GP P+ S + +RR
Sbjct: 771 -----RDAPC----------------------SASSELSGPS-TPLHTSSPVQGKESTRR 802
Query: 183 FIPRPPSVAPP----PMVAEIPSAGTGPGSKGERAEDSGQRPRRWCPPPFFYRRRFVRGP 238
R P+ AP P A P + G G E SG P P P V
Sbjct: 803 QDTRSPTSAPTQRLSPGEALPPVSQAGTGKAPELPSGSGPEPL--APSP-------VSPT 853
Query: 239 RPPNQQQPIEGTDRVEPKETAPLEGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEGG 298
PP+ P+E +P GH R P P P R PR P + G
Sbjct: 854 FPPSSPSDW-------PQERSP-GGHSDGASPRSPVPTTLPGLRHAPWQGPRGPPDSPDG 905
Query: 299 DGETK-PSQGPADGSRPEPQRPRNRPYFQR---------------RRQQAPGPQQAPGPR 342
T PSQ P + PEP + P F ++ PGP Q PGP
Sbjct: 906 SPLTPVPSQMPWLVASPEPPQSSPTPAFPLAASYDTNGLSQPPLPEKRHLPGPGQQPGPW 965
Query: 343 QPAAPETSA 351
P + A
Sbjct: 966 GPEQASSPA 974
Score = 31.2 bits (69), Expect = 1.5
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 11/66 (16%)
Query: 299 DGETKPSQGPADGSRPEPQRPRNRPYFQRRRQQAPGPQQAPGPRQPAAPETSAPVNSGDP 358
DG ++GP DGS PY Q +R P AP P P P S +SG
Sbjct: 344 DGSLTHTRGPLDGS----------PYAQVQRPPRQTPP-APSPEPPPPPMLSVSSDSGHS 392
Query: 359 TTTILE 364
+T E
Sbjct: 393 STLTTE 398
Score = 29.6 bits (65), Expect = 4.4
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 167 PVKGSRYAPNRRKSRRFIPRPPSVAPPPMVAEIPS-AGTGPGSKGERAEDSGQRP 220
P+ GS YA +R R+ P P PPP + + S +G E A +S RP
Sbjct: 353 PLDGSPYAQVQRPPRQTPPAPSPEPPPPPMLSVSSDSGHSSTLTTEPAAESPGRP 407
Score = 29.3 bits (64), Expect = 5.8
Identities = 27/112 (24%), Positives = 38/112 (33%), Gaps = 3/112 (2%)
Query: 250 TDRVEPKETAPLEGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEGGDGETKPSQGPA 309
T R+ P E P G P P P P P++ + + G +
Sbjct: 813 TQRLSPGEALPPVSQAGTGKAPELPSGSGPEPLAPSPVSPTFPPSSPSDWPQERSPGGHS 872
Query: 310 DGSRPEPQRPRNRPYFQRRRQQAP-GPQQAP--GPRQPAAPETSAPVNSGDP 358
DG+ P P P + Q P GP +P P P + V S +P
Sbjct: 873 DGASPRSPVPTTLPGLRHAPWQGPRGPPDSPDGSPLTPVPSQMPWLVASPEP 924
>gi|38787957 tensin like C1 domain containing phosphatase isoform 2
[Homo sapiens]
Length = 1409
Score = 48.1 bits (113), Expect = 1e-05
Identities = 89/369 (24%), Positives = 121/369 (32%), Gaps = 88/369 (23%)
Query: 16 ATVPATAAGVVAVVVPVPAGEPQKGGGAGGGGGAASGPAAGTPSAPGSRTPGNPA----- 70
A V + G V P P G G G G S P A +P A GS +PG+P
Sbjct: 785 ALVTYSYGGAVPSYCPAYGRVPHSCGSPGEGRGYPS-PGAHSPRA-GSISPGSPPYPQSR 842
Query: 71 -------TAVSGTPAP-PARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVH 122
T G P P + P+ + + L V W +G+ + R+
Sbjct: 843 KLSYEIPTEEGGDRYPLPGHLASAGPLASAESLEPVSWREGPSGHSTLPRSP-------- 894
Query: 123 QTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRKSRR 182
R+ P + ++ ++GP P+ S + +RR
Sbjct: 895 -----RDAPC----------------------SASSELSGPS-TPLHTSSPVQGKESTRR 926
Query: 183 FIPRPPSVAPP----PMVAEIPSAGTGPGSKGERAEDSGQRPRRWCPPPFFYRRRFVRGP 238
R P+ AP P A P + G G E SG P P P V
Sbjct: 927 QDTRSPTSAPTQRLSPGEALPPVSQAGTGKAPELPSGSGPEPL--APSP-------VSPT 977
Query: 239 RPPNQQQPIEGTDRVEPKETAPLEGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEGG 298
PP+ P+E +P GH R P P P R PR P + G
Sbjct: 978 FPPSSPSDW-------PQERSP-GGHSDGASPRSPVPTTLPGLRHAPWQGPRGPPDSPDG 1029
Query: 299 DGETK-PSQGPADGSRPEPQRPRNRPYFQR---------------RRQQAPGPQQAPGPR 342
T PSQ P + PEP + P F ++ PGP Q PGP
Sbjct: 1030 SPLTPVPSQMPWLVASPEPPQSSPTPAFPLAASYDTNGLSQPPLPEKRHLPGPGQQPGPW 1089
Query: 343 QPAAPETSA 351
P + A
Sbjct: 1090 GPEQASSPA 1098
Score = 31.2 bits (69), Expect = 1.5
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 11/66 (16%)
Query: 299 DGETKPSQGPADGSRPEPQRPRNRPYFQRRRQQAPGPQQAPGPRQPAAPETSAPVNSGDP 358
DG ++GP DGS PY Q +R P AP P P P S +SG
Sbjct: 468 DGSLTHTRGPLDGS----------PYAQVQRPPRQTPP-APSPEPPPPPMLSVSSDSGHS 516
Query: 359 TTTILE 364
+T E
Sbjct: 517 STLTTE 522
Score = 29.6 bits (65), Expect = 4.4
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 167 PVKGSRYAPNRRKSRRFIPRPPSVAPPPMVAEIPS-AGTGPGSKGERAEDSGQRP 220
P+ GS YA +R R+ P P PPP + + S +G E A +S RP
Sbjct: 477 PLDGSPYAQVQRPPRQTPPAPSPEPPPPPMLSVSSDSGHSSTLTTEPAAESPGRP 531
Score = 29.3 bits (64), Expect = 5.8
Identities = 27/112 (24%), Positives = 38/112 (33%), Gaps = 3/112 (2%)
Query: 250 TDRVEPKETAPLEGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEGGDGETKPSQGPA 309
T R+ P E P G P P P P P++ + + G +
Sbjct: 937 TQRLSPGEALPPVSQAGTGKAPELPSGSGPEPLAPSPVSPTFPPSSPSDWPQERSPGGHS 996
Query: 310 DGSRPEPQRPRNRPYFQRRRQQAP-GPQQAP--GPRQPAAPETSAPVNSGDP 358
DG+ P P P + Q P GP +P P P + V S +P
Sbjct: 997 DGASPRSPVPTTLPGLRHAPWQGPRGPPDSPDGSPLTPVPSQMPWLVASPEP 1048
>gi|38787941 tensin like C1 domain containing phosphatase isoform 1
[Homo sapiens]
Length = 1419
Score = 48.1 bits (113), Expect = 1e-05
Identities = 89/369 (24%), Positives = 121/369 (32%), Gaps = 88/369 (23%)
Query: 16 ATVPATAAGVVAVVVPVPAGEPQKGGGAGGGGGAASGPAAGTPSAPGSRTPGNPA----- 70
A V + G V P P G G G G S P A +P A GS +PG+P
Sbjct: 795 ALVTYSYGGAVPSYCPAYGRVPHSCGSPGEGRGYPS-PGAHSPRA-GSISPGSPPYPQSR 852
Query: 71 -------TAVSGTPAP-PARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVH 122
T G P P + P+ + + L V W +G+ + R+
Sbjct: 853 KLSYEIPTEEGGDRYPLPGHLASAGPLASAESLEPVSWREGPSGHSTLPRSP-------- 904
Query: 123 QTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRKSRR 182
R+ P + ++ ++GP P+ S + +RR
Sbjct: 905 -----RDAPC----------------------SASSELSGPS-TPLHTSSPVQGKESTRR 936
Query: 183 FIPRPPSVAPP----PMVAEIPSAGTGPGSKGERAEDSGQRPRRWCPPPFFYRRRFVRGP 238
R P+ AP P A P + G G E SG P P P V
Sbjct: 937 QDTRSPTSAPTQRLSPGEALPPVSQAGTGKAPELPSGSGPEPL--APSP-------VSPT 987
Query: 239 RPPNQQQPIEGTDRVEPKETAPLEGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEGG 298
PP+ P+E +P GH R P P P R PR P + G
Sbjct: 988 FPPSSPSDW-------PQERSP-GGHSDGASPRSPVPTTLPGLRHAPWQGPRGPPDSPDG 1039
Query: 299 DGETK-PSQGPADGSRPEPQRPRNRPYFQR---------------RRQQAPGPQQAPGPR 342
T PSQ P + PEP + P F ++ PGP Q PGP
Sbjct: 1040 SPLTPVPSQMPWLVASPEPPQSSPTPAFPLAASYDTNGLSQPPLPEKRHLPGPGQQPGPW 1099
Query: 343 QPAAPETSA 351
P + A
Sbjct: 1100 GPEQASSPA 1108
Score = 31.2 bits (69), Expect = 1.5
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 11/66 (16%)
Query: 299 DGETKPSQGPADGSRPEPQRPRNRPYFQRRRQQAPGPQQAPGPRQPAAPETSAPVNSGDP 358
DG ++GP DGS PY Q +R P AP P P P S +SG
Sbjct: 478 DGSLTHTRGPLDGS----------PYAQVQRPPRQTPP-APSPEPPPPPMLSVSSDSGHS 526
Query: 359 TTTILE 364
+T E
Sbjct: 527 STLTTE 532
Score = 29.6 bits (65), Expect = 4.4
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 167 PVKGSRYAPNRRKSRRFIPRPPSVAPPPMVAEIPS-AGTGPGSKGERAEDSGQRP 220
P+ GS YA +R R+ P P PPP + + S +G E A +S RP
Sbjct: 487 PLDGSPYAQVQRPPRQTPPAPSPEPPPPPMLSVSSDSGHSSTLTTEPAAESPGRP 541
Score = 29.3 bits (64), Expect = 5.8
Identities = 27/112 (24%), Positives = 38/112 (33%), Gaps = 3/112 (2%)
Query: 250 TDRVEPKETAPLEGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEGGDGETKPSQGPA 309
T R+ P E P G P P P P P++ + + G +
Sbjct: 947 TQRLSPGEALPPVSQAGTGKAPELPSGSGPEPLAPSPVSPTFPPSSPSDWPQERSPGGHS 1006
Query: 310 DGSRPEPQRPRNRPYFQRRRQQAP-GPQQAP--GPRQPAAPETSAPVNSGDP 358
DG+ P P P + Q P GP +P P P + V S +P
Sbjct: 1007 DGASPRSPVPTTLPGLRHAPWQGPRGPPDSPDGSPLTPVPSQMPWLVASPEP 1058
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 48.1 bits (113), Expect = 1e-05
Identities = 50/199 (25%), Positives = 67/199 (33%), Gaps = 43/199 (21%)
Query: 188 PSVAPPPMVAEIPSAGTGPGSKGERAEDSGQRPRRWCPPPFFYRRRFVRGPRPPNQQQPI 247
P PPP P GP +G G + + PPP R +G P
Sbjct: 47 PQRPPPP-----PGKPQGPPPQG------GNQSQGPPPPPGKPEGRPPQGGNQSQGPPPH 95
Query: 248 EGTDRVEPKETAPLEGHQQQGD-------ERVPPPRFRPRYRRPFRPRPRQQPTTEGGDG 300
G +P+ P G+Q QG ER PP +R P P ++P +GG+
Sbjct: 96 PG----KPERPPPQGGNQSQGTPPPPGKPERPPPQGGNQSHRPPPPPGKPERPPPQGGNQ 151
Query: 301 ETKPSQGPADGSRPEPQ-------------RPRNRPYFQRRRQQAPGPQQAP-------- 339
P P P PQ +P+ P + + Q P P P
Sbjct: 152 SQGPPPHPGKPEGPPPQEGNKSRSARSPPGKPQGPPQQEGNKPQGPPPPGKPQGPPPAGG 211
Query: 340 GPRQPAAPETSAPVNSGDP 358
P+QP AP P P
Sbjct: 212 NPQQPQAPPAGKPQGPPPP 230
Score = 43.5 bits (101), Expect = 3e-04
Identities = 49/194 (25%), Positives = 70/194 (36%), Gaps = 21/194 (10%)
Query: 163 PGGVPVKGSRYAPNRRKSRRFIPRPPSVAPPPMVAEIPSAGTGPGSKGERAEDSGQRPRR 222
P G P +G N+ + P P PP + PG G + +
Sbjct: 57 PQGPPPQGG----NQSQGPPPPPGKPEGRPPQGGNQSQGPPPHPGKPERPPPQGGNQSQG 112
Query: 223 WCPPPFFYRRRFVRGPRPPNQQQPIEGTDRVEPKETAPLEGHQQQGDE------RVPPPR 276
PPP R +G ++ P G +P+ P G+Q QG PPP+
Sbjct: 113 TPPPPGKPERPPPQGGNQSHRPPPPPG----KPERPPPQGGNQSQGPPPHPGKPEGPPPQ 168
Query: 277 FRPRYRRPFRP--RPRQQPTTEGGDGETKPSQGPADGSRP---EPQRPRNRPYFQRRRQQ 331
+ R P +P+ P EG + P G G P PQ+P+ P + Q
Sbjct: 169 EGNKSRSARSPPGKPQGPPQQEGNKPQGPPPPGKPQGPPPAGGNPQQPQAPP--AGKPQG 226
Query: 332 APGPQQAPGPRQPA 345
P P Q P +PA
Sbjct: 227 PPPPPQGGRPPRPA 240
Score = 42.7 bits (99), Expect = 5e-04
Identities = 43/155 (27%), Positives = 58/155 (37%), Gaps = 23/155 (14%)
Query: 207 GSKGERAEDSGQRPRRWCPPPFFYRRRFVRGPRPP--NQQQ---PIEGTDRVEPKETAPL 261
G R G +P+R PPP +GP P NQ Q P G +P+ P
Sbjct: 34 GKPEGRRPQGGNQPQRPPPPP-----GKPQGPPPQGGNQSQGPPPPPG----KPEGRPPQ 84
Query: 262 EGHQQQGD-------ERVPPPRFRPRYRRPFRPRPRQQPTTEGGDGETKPSQGPADGSRP 314
G+Q QG ER PP P P ++P +GG+ +P P RP
Sbjct: 85 GGNQSQGPPPHPGKPERPPPQGGNQSQGTPPPPGKPERPPPQGGNQSHRPPPPPGKPERP 144
Query: 315 EPQ--RPRNRPYFQRRRQQAPGPQQAPGPRQPAAP 347
PQ P + + P PQ+ R +P
Sbjct: 145 PPQGGNQSQGPPPHPGKPEGPPPQEGNKSRSARSP 179
Score = 35.4 bits (80), Expect = 0.081
Identities = 50/195 (25%), Positives = 60/195 (30%), Gaps = 38/195 (19%)
Query: 150 EGEKGAEATNVTGPGGVPVKGSRYAPNRRKSRRFIPRPPSVA--PPPMVAEIPSAGTGPG 207
EG GP P K R P + P PP PPP P
Sbjct: 79 EGRPPQGGNQSQGPPPHPGKPERPPPQGGNQSQGTPPPPGKPERPPPQGGNQSHRPPPPP 138
Query: 208 SKGERAEDSGQRPRRWCPPPFFYRRRFVRGPRPPNQQQPIEGTDRV-------EPKETAP 260
K ER G + PP P P P EG +P+
Sbjct: 139 GKPERPPPQGGNQSQGPPPH----------PGKPEGPPPQEGNKSRSARSPPGKPQGPPQ 188
Query: 261 LEGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEGGDGE--TKPSQGPADGSRPEPQR 318
EG++ QG PPP +P Q P GG+ + P G G P PQ
Sbjct: 189 QEGNKPQG----PPPPGKP-----------QGPPPAGGNPQQPQAPPAGKPQGPPPPPQ- 232
Query: 319 PRNRPYFQRRRQQAP 333
RP + QQ P
Sbjct: 233 -GGRPPRPAQGQQPP 246
Score = 32.0 bits (71), Expect = 0.89
Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 7/54 (12%)
Query: 31 PVPAGEPQKGGGAGGGGGAASGPAAGTPSAPGSRTPGNPATAVSGTPAPPARSQ 84
P P G+PQ AGG P AG P P P G P PA+ Q
Sbjct: 197 PPPPGKPQGPPPAGGNPQQPQAPPAGKPQGP-------PPPPQGGRPPRPAQGQ 243
Score = 31.2 bits (69), Expect = 1.5
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 31 PVPAGEPQKGGGAGGGGGAASGPAAGTPSAPG--SRTPGNPATAVSGTPAPPARSQADKP 88
P P G+P+ G GG + GP P PG R P GTP PP + + P
Sbjct: 72 PPPPGKPE--GRPPQGGNQSQGP----PPHPGKPERPPPQGGNQSQGTPPPPGKPERPPP 125
Score = 30.8 bits (68), Expect = 2.0
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 31 PVPAGEPQKGGGAGGGGGAASGPAAGTPSAPGSRTPGNPATAVS--GTPAPPARSQADKP 88
P P G+P++ GG P G P P + +A S G P P + + +KP
Sbjct: 135 PPPPGKPERPPPQGGNQSQGPPPHPGKPEGPPPQEGNKSRSARSPPGKPQGPPQQEGNKP 194
Score = 28.9 bits (63), Expect = 7.6
Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
Query: 33 PAGEPQKGGGAGGG---GGAASG--PAAGTPSAPGSRTPGNPATAVSGTPAPPARSQADK 87
P G PQ+ G G G G PA G P P + G P G P PP + +
Sbjct: 183 PQGPPQQEGNKPQGPPPPGKPQGPPPAGGNPQQPQAPPAGKP----QGPPPPPQGGRPPR 238
Query: 88 P 88
P
Sbjct: 239 P 239
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 47.8 bits (112), Expect = 2e-05
Identities = 95/368 (25%), Positives = 119/368 (32%), Gaps = 57/368 (15%)
Query: 5 EAAAGATAVPAATVPATAAGVVAVV-------VPVPAGEPQKGGGAGGGG--GAASGPA- 54
+ GA P PA G +P P G P +GG G G G A P
Sbjct: 635 DGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGL 694
Query: 55 ------------AGTPSAPGSRTP-GNPATAVSGTPAPPARSQADKPVLAIQVLGTVKWF 101
G+P A G + P G P T GT P S P A G
Sbjct: 695 VGPRGERGFPGERGSPGAQGLQGPRGLPGT--PGTDGPKGASGPAGPPGAQGPPGLQGMP 752
Query: 102 NVRNGYGFINRNDTKEDVFVH--QTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATN 159
R G + DV + A ++ R +G GEKG
Sbjct: 753 GERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAG---ANGEKG----E 805
Query: 160 VTGPGGVPVKGSRYAPNRRKSRRFIPRPPSVAPPPMVAEIPSAGTGPGSKGERAEDSGQR 219
V PG G+R AP R P P A P P A PG+KGE+ E +GQ+
Sbjct: 806 VGPPGPAGSAGARGAPGER-GETGPPGPAGFAGP------PGADGQPGAKGEQGE-AGQK 857
Query: 220 PRRWCPPPFFYRRRFVRGPR-PPNQQQP--IEGTDRVEPKETAPLEGHQQQGDERVPPPR 276
P P +GP P Q P + G + P RV PP
Sbjct: 858 GDAGAPGP--------QGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPG 909
Query: 277 FRPRYRRPFRPRPRQQPTTEGGDGETKPSQGPADGSRPEPQRPRNRPYFQRRRQQAPGPQ 336
P P P + +G G++ P P P Q P P ++ GP
Sbjct: 910 SNGNPGPPGPPGPSGKDGPKGARGDSGP---PGRAGEPGLQGPAGPP-GEKGEPGDDGPS 965
Query: 337 QAPGPRQP 344
A GP P
Sbjct: 966 GAEGPPGP 973
Score = 42.7 bits (99), Expect = 5e-04
Identities = 89/345 (25%), Positives = 110/345 (31%), Gaps = 55/345 (15%)
Query: 31 PVPAGEPQKGGGAGGGGG----AASGPAA--GTPSAPGSRTPGNPATAVSGTPAPPARSQ 84
P PAG P G G G SGP G P PG PG+ A G P
Sbjct: 212 PGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGK--PGDDGEA--GKPGKAGERG 267
Query: 85 ADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETV 144
P A GT V+ G+ + K + + +P
Sbjct: 268 PPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSP------------- 314
Query: 145 EFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRKSRRFIPRPPSVAPPPMVAEIPSAGT 204
GE G+ GP G+P + R P R P A PP P+ G
Sbjct: 315 ------GENGSPGP--MGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVG-PAGGP 365
Query: 205 G----PGSKGE------RAEDSGQRPRRWCPPPFFYRRRFVRGPRPPNQQQPIEGTDRVE 254
G PG+KGE R + Q PR P G P GTD +
Sbjct: 366 GFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTP---------GSPGPAGASGNPGTDGIP 416
Query: 255 -PKETAPLEGHQQQGDERVPPPRFRPRYRRPFRPRPRQQPTTEGGDGETKPSQGPADGSR 313
K +A G G P PR P + P + T E G K QGP
Sbjct: 417 GAKGSAGAPGIA--GAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPG 474
Query: 314 PEPQRPRNRPYFQRRRQQAPGPQQAPGPRQPAAPETSAPVNSGDP 358
P + P + ++ A G GP P E AP N G P
Sbjct: 475 PAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPG-ERGAPGNRGFP 518
Score = 40.8 bits (94), Expect = 0.002
Identities = 92/348 (26%), Positives = 112/348 (32%), Gaps = 73/348 (20%)
Query: 33 PAGEPQKGGGAGGGGGAASGPAAGTPSAPGSR-------TPGNPATAVSGTPAPPARSQA 85
P G P G AG G G APG R TPGNP G P PP
Sbjct: 118 PKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGP--PGPPGPPGPP-- 173
Query: 86 DKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVE 145
G F + GF + + + V Q + PR G
Sbjct: 174 ----------GLGGNFAAQMAGGFDEKAGGAQ-LGVMQGPMGPMGPRGPPGPAGAPGPQG 222
Query: 146 FDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRKSRRFIPRPPSVAPPPMVAEIPSAGTG 205
F GE G V+GP G PR P PP + AG
Sbjct: 223 FQGNPGEPG--EPGVSGPMG-------------------PRGPP-GPPGKPGDDGEAGK- 259
Query: 206 PGSKGERAEDSGQRPRRWCPPPFFYRRRFVRGPRPPNQQQPIEGTDRVEPKETAP-LEGH 264
PG GER Q R + P + RG G D + + AP ++G
Sbjct: 260 PGKAGERGPPGPQGARGFPGTPGLPGVKGHRG---------YPGLDGAKGEAGAPGVKGE 310
Query: 265 QQQGDERVPPPRFRPRYRRPFRPR--PRQQPTTEGGDGETKPSQGPADGSRPEPQRPRNR 322
E P PR R R P G DG+ P+ GP P P P
Sbjct: 311 SGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPA-GP-----PGPVGPAGG 364
Query: 323 PYF--------QRRRQQAPGPQQAPGPR-QPAAPETSAPVN-SGDPTT 360
P F + A GP+ A GPR +P P + P SG+P T
Sbjct: 365 PGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGT 412
Score = 36.6 bits (83), Expect = 0.036
Identities = 81/349 (23%), Positives = 100/349 (28%), Gaps = 71/349 (20%)
Query: 33 PAGEPQKGGGAGGGGGAASGPAAGTPSAPGSRTPGNPATAVSGTPAPPARSQADKPVLAI 92
P G P K GG G G AG G P PA + AP R + P A
Sbjct: 775 PEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPA- 833
Query: 93 QVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGE 152
GF P + GE E G+
Sbjct: 834 ---------------GFAGP------------------PGADGQPGAKGEQGE----AGQ 856
Query: 153 KG-AEATNVTGPGGVPVKGSRYAPNRRKSRRFIPRPPSVAPPPMVAEI--PSAGTG---- 205
KG A A GP G P K R PP P A P G
Sbjct: 857 KGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGP 916
Query: 206 PGSKGERAEDSGQRPRRWCPPPFFYRRRFVRGPRPPNQQQPIEGTDRVEPKETAP----- 260
PG G +D + R PP ++GP P ++ G D E P
Sbjct: 917 PGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGL 976
Query: 261 --------LEGHQ-QQGDERVPPPRFRP-RYRRPFRPRPRQQPTTEGGDGETKPSQGPAD 310
L G + ++G +P P P + P R P G G T P+ P
Sbjct: 977 AGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGR 1036
Query: 311 GSRPEPQRPRNRPYFQRRRQQ-----------APGPQQAPGPRQPAAPE 348
P P R + APGP +PGP P +
Sbjct: 1037 EGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQ 1085
Score = 35.8 bits (81), Expect = 0.062
Identities = 97/352 (27%), Positives = 117/352 (33%), Gaps = 104/352 (29%)
Query: 17 TVPATAAGVVAVV-VPVPAGEPQKGGGAGG-------GGGAASGP--AAGTPSAPGSR-- 64
T PA AAG P PAG P G AGG G +GP A G A G R
Sbjct: 335 TGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGE 394
Query: 65 --TPGNPATA-VSGTPA----PPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKE 117
TPG+P A SG P P A+ A P +A G + R G
Sbjct: 395 PGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIA----GAPGFPGPRGPPG--------- 441
Query: 118 DVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNR 177
Q A P+ G+T E + G KG + GP G P
Sbjct: 442 ----PQGATGPLGPK--------GQTGE-PGIAGFKGEQ-----GPKGEPG--------- 474
Query: 178 RKSRRFIPRPPSVAPPPMVAEIPSAGTGPGSKGERAEDSGQRPRRWCPPPFFYRRRFVRG 237
P P AP P E G +G R E G P PP G
Sbjct: 475 -------PAGPQGAPGPAGEE--------GKRGARGEPGGVGP---IGPP---------G 507
Query: 238 PRPPNQQQPIEGTDRVEPKETAPLEGHQQQGDERVPPPRFR----PRYRRPFRPRPR--- 290
R + G D + + AP E +G + P+ R P P R
Sbjct: 508 ERGAPGNRGFPGQDGLAGPKGAPGE----RGPSGLAGPKGANGDPGRPGEPGLPGARGLT 563
Query: 291 QQPTTEGGDGETKPSQGPADGSRPEPQRPRNRPYFQRRRQQAPGPQQAPGPR 342
+P G G+ PS P + RP P P Q R Q PG PGP+
Sbjct: 564 GRPGDAGPQGKVGPSGAPGEDGRPGPPGP------QGARGQ-PGVMGFPGPK 608
Score = 35.8 bits (81), Expect = 0.062
Identities = 92/353 (26%), Positives = 113/353 (32%), Gaps = 36/353 (10%)
Query: 5 EAAAGATAVPAATVPATAAGVVAVVV----PVPAGEPQKGGGAGGGGGAASGPAAGTPSA 60
+ A GA P AT AAG V P P G P G G G G
Sbjct: 884 KGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGE 943
Query: 61 PGSRTPGNPATAVSGTPAPPARSQADKPV----LAIQVLGTVKWFNVRNGYGFINRNDTK 116
PG + P P G P S A+ P LA Q G V R GF
Sbjct: 944 PGLQGPAGPP-GEKGEPGDDGPSGAEGPPGPQGLAGQ-RGIVGLPGQRGERGFPGLPGPS 1001
Query: 117 EDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVK-GSRYAP 175
+ Q A + R VG GE G E + G G P + G+
Sbjct: 1002 GEPG-KQGAPGASGDRGPPGPVGPPGLTG---PAGEPGREGS--PGADGPPGRDGAAGVK 1055
Query: 176 NRRKSRRFIPRPPSVAPPPMVAEIPSAGTGPGSKGERAEDSGQRPRRWCPPPFFYRRRFV 235
R + P + PP P G +G+R E Q P P R +
Sbjct: 1056 GDRGETGAVGAPGAPGPPGS----PGPAGPTGKQGDRGEAGAQGPMGPSGPA---GARGI 1108
Query: 236 RGPRPPNQQQPIEGTDRVEPKETAPLEGHQQ----QGDERVPPPRFRPRYRRPFRPR-PR 290
+GP+ P + G EP E L+GH+ QG P P P P PR
Sbjct: 1109 QGPQGPRGDKGEAG----EPGERG-LKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPR 1163
Query: 291 QQPTTEGGDGETKPS--QGPADGSRPEPQRPRNRPYFQRRRQQAPGPQQAPGP 341
P G G+ + GP P + P PGP PGP
Sbjct: 1164 GPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGP 1216
Score = 30.8 bits (68), Expect = 2.0
Identities = 27/84 (32%), Positives = 31/84 (36%), Gaps = 4/84 (4%)
Query: 9 GATAVPAATVPATAAGVVAVVVPVPA-GEPQKGGGAGGGGGAASGPAAGTPSAPGSRTPG 67
GA A P G P A G P G G G A + AG P PG R P
Sbjct: 381 GARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPP 440
Query: 68 NPATAVSGTPAPPARSQADKPVLA 91
P A P P + Q +P +A
Sbjct: 441 GPQGATG--PLGP-KGQTGEPGIA 461
Score = 30.8 bits (68), Expect = 2.0
Identities = 57/225 (25%), Positives = 78/225 (34%), Gaps = 32/225 (14%)
Query: 151 GEKGAE-ATNVTGPGGVPVKGSRYAPNRRKSRRFIPRPPSVAPPPMVAEIPS---AGTGP 206
GE+G+ A + GP G+P P K PP PP + +P A
Sbjct: 705 GERGSPGAQGLQGPRGLPGTPGTDGP---KGASGPAGPPGAQGPPGLQGMPGERGAAGIA 761
Query: 207 GSKGERAEDSGQRPRRWCPPPFFYRRRFVRGP-RPPNQQQPIEGTDRVEPKETAPLEGHQ 265
G KG+R + + P P R + GP PP V P A G +
Sbjct: 762 GPKGDRGDVGEKGPEG---APGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGAR 818
Query: 266 ----QQGDERVPPPRFRPRYRRPFRPRPRQQPTTEG--------GDGETKPSQGPADGSR 313
++G+ P P + P P QP +G GD QGP+
Sbjct: 819 GAPGERGETGPPGPA---GFAGP--PGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPG 873
Query: 314 PEPQRPRNRPYFQRRRQQAPGPQQAPGPRQPAAPETSAPVNSGDP 358
P+ P R Q PG PG AA P ++G+P
Sbjct: 874 PQGPTGVTGPKGARGAQGPPGATGFPG----AAGRVGPPGSNGNP 914
Score = 29.6 bits (65), Expect = 4.4
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 30 VPVPAGEPQKGGGAGGGGGAASGPAAGTPSAPGSRTPGNPATAVSG 75
+P P G P G +G G A G P PG PG +A +G
Sbjct: 1180 IPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAG 1225
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.134 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,562,514
Number of Sequences: 37866
Number of extensions: 1627494
Number of successful extensions: 23783
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 1181
Number of HSP's that attempted gapping in prelim test: 12710
Number of HSP's gapped (non-prelim): 9467
length of query: 364
length of database: 18,247,518
effective HSP length: 104
effective length of query: 260
effective length of database: 14,309,454
effective search space: 3720458040
effective search space used: 3720458040
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.