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Search of human proteins with 156151396
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform
3 [Homo sapiens]
(535 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3... 1124 0.0
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1... 1124 0.0
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4... 1113 0.0
gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [... 1113 0.0
gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting ... 916 0.0
gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting ... 831 0.0
gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting ... 782 0.0
gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting ... 779 0.0
gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting ... 779 0.0
gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting ... 694 0.0
gi|148833513 RNA binding motif protein 47 isoform a [Homo sapiens] 365 e-101
gi|148833511 RNA binding motif protein 47 isoform b [Homo sapiens] 349 3e-96
gi|21450675 RNA binding motif protein 46 [Homo sapiens] 339 3e-93
gi|20357575 apobec-1 complementation factor isoform 2 [Homo sapi... 330 3e-90
gi|20357572 apobec-1 complementation factor isoform 1 [Homo sapi... 330 3e-90
gi|20357578 apobec-1 complementation factor isoform 3 [Homo sapi... 313 2e-85
gi|34740339 dead end homolog 1 [Homo sapiens] 132 8e-31
gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo s... 87 3e-17
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 87 5e-17
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 86 9e-17
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 86 9e-17
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... 86 9e-17
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... 86 9e-17
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... 86 9e-17
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 86 9e-17
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens] 84 4e-16
gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo sa... 83 6e-16
gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo s... 83 7e-16
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 81 2e-15
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] 80 6e-15
>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
[Homo sapiens]
Length = 535
Score = 1124 bits (2908), Expect = 0.0
Identities = 535/535 (100%), Positives = 535/535 (100%)
Query: 1 MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 60
MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP
Sbjct: 1 MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 60
Query: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE
Sbjct: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
Query: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVIL 180
AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVIL
Sbjct: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVIL 180
Query: 181 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA 240
YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA
Sbjct: 181 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA 240
Query: 241 KVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKE 300
KVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKE
Sbjct: 241 KVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKE 300
Query: 301 IEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY 360
IEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY
Sbjct: 301 IEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY 360
Query: 361 GYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGR 420
GYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGR
Sbjct: 361 GYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGR 420
Query: 421 GAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGY 480
GAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGY
Sbjct: 421 GAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGY 480
Query: 481 NQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK 535
NQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK
Sbjct: 481 NQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK 535
>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
[Homo sapiens]
Length = 636
Score = 1124 bits (2908), Expect = 0.0
Identities = 535/535 (100%), Positives = 535/535 (100%)
Query: 1 MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 60
MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP
Sbjct: 102 MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 161
Query: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE
Sbjct: 162 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 221
Query: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVIL 180
AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVIL
Sbjct: 222 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVIL 281
Query: 181 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA 240
YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA
Sbjct: 282 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA 341
Query: 241 KVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKE 300
KVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKE
Sbjct: 342 KVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKE 401
Query: 301 IEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY 360
IEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY
Sbjct: 402 IEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY 461
Query: 361 GYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGR 420
GYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGR
Sbjct: 462 GYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGR 521
Query: 421 GAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGY 480
GAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGY
Sbjct: 522 GAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGY 581
Query: 481 NQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK 535
NQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK
Sbjct: 582 NQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK 636
>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
[Homo sapiens]
Length = 532
Score = 1113 bits (2879), Expect = 0.0
Identities = 532/535 (99%), Positives = 532/535 (99%), Gaps = 3/535 (0%)
Query: 1 MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 60
MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP
Sbjct: 1 MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 60
Query: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE
Sbjct: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
Query: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVIL 180
AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVT EGLVDVIL
Sbjct: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVT---EGLVDVIL 177
Query: 181 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA 240
YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA
Sbjct: 178 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA 237
Query: 241 KVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKE 300
KVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKE
Sbjct: 238 KVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKE 297
Query: 301 IEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY 360
IEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY
Sbjct: 298 IEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY 357
Query: 361 GYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGR 420
GYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGR
Sbjct: 358 GYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGR 417
Query: 421 GAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGY 480
GAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGY
Sbjct: 418 GAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGY 477
Query: 481 NQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK 535
NQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK
Sbjct: 478 NQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK 532
>gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2
[Homo sapiens]
Length = 633
Score = 1113 bits (2879), Expect = 0.0
Identities = 532/535 (99%), Positives = 532/535 (99%), Gaps = 3/535 (0%)
Query: 1 MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 60
MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP
Sbjct: 102 MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 161
Query: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE
Sbjct: 162 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 221
Query: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVIL 180
AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVT EGLVDVIL
Sbjct: 222 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVT---EGLVDVIL 278
Query: 181 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA 240
YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA
Sbjct: 279 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA 338
Query: 241 KVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKE 300
KVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKE
Sbjct: 339 KVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKE 398
Query: 301 IEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY 360
IEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY
Sbjct: 399 IEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY 458
Query: 361 GYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGR 420
GYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGR
Sbjct: 459 GYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGR 518
Query: 421 GAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGY 480
GAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGY
Sbjct: 519 GAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGY 578
Query: 481 NQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK 535
NQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK
Sbjct: 579 NQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK 633
>gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 1 [Homo sapiens]
Length = 623
Score = 916 bits (2368), Expect = 0.0
Identities = 449/536 (83%), Positives = 488/536 (91%), Gaps = 12/536 (2%)
Query: 1 MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 60
MKTYRQREKQG+KV +S+KGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSG QP
Sbjct: 99 MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 158
Query: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
+GTE+FVGKIPRDL+EDELVPLFEKAGPIWDLRLMMDPL+G NRGYAF+TFC KEAAQE
Sbjct: 159 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 218
Query: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVIL 180
AVKL +++EIR GKH+GVCISVANNRLFVGSIPK+KTKE ILEEFSKVT EGL DVIL
Sbjct: 219 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVT---EGLTDVIL 275
Query: 181 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA 240
YHQPDDKKKNRGFCFLEYEDHK+AAQARRRLMSGKVKVWGNV TVEWADP+E+PDPEVMA
Sbjct: 276 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA 335
Query: 241 KVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKE 300
KVKVLFVRNLA TVTEEILEK+FS+FGKLERVKKLKDYAF+HF++R AVKAM+EMNGK+
Sbjct: 336 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKD 395
Query: 301 IEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY 360
+EGE IEIV AKPPD+KRKER+A RQA+++ Y+DYYY+ PP MPPP RGRGR GGRGGY
Sbjct: 396 LEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGR-GGRGGY 454
Query: 361 GYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRG-GGRGGRGAPPPPRG 419
GYPPDYYGYEDYY DYYGYDYH+YRGGYEDPYYGY+D + V RG GGRG RGA P RG
Sbjct: 455 GYPPDYYGYEDYY-DYYGYDYHNYRGGYEDPYYGYED-FQVGARGRGGRGARGA-APSRG 511
Query: 420 RGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADG 479
RGA PPRGRAGYSQRG P G RG RG RGG AQQQRGRG RG+RG RGGNVGGKRKADG
Sbjct: 512 RGAAPPRGRAGYSQRGGP-GSARGVRGARGG-AQQQRGRGVRGARGGRGGNVGGKRKADG 569
Query: 480 YNQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK 535
YNQPDSKRRQTNN QNWGSQPIAQQPL QGGD+SGNYGY ++NQEFYQDT+GQQWK
Sbjct: 570 YNQPDSKRRQTNN-QNWGSQPIAQQPL-QGGDHSGNYGYKSENQEFYQDTFGQQWK 623
>gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 4 [Homo sapiens]
Length = 588
Score = 831 bits (2147), Expect = 0.0
Identities = 417/536 (77%), Positives = 454/536 (84%), Gaps = 47/536 (8%)
Query: 1 MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 60
MKTYRQREKQG+KV +S+KGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSG QP
Sbjct: 99 MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 158
Query: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
+GTE+FVGKIPRDL+EDELVPLFEKAGPIWDLRLMMDPL+G NRGYAF+TFC KEAAQE
Sbjct: 159 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 218
Query: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVIL 180
AVKL +++EIR GKH+GVCISVANNRLFVGSIPK+KTKE ILEEFSKVT EGL DVIL
Sbjct: 219 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVT---EGLTDVIL 275
Query: 181 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA 240
YHQPDDKKKNRGFCFLEYEDHK+AAQ
Sbjct: 276 YHQPDDKKKNRGFCFLEYEDHKTAAQ---------------------------------- 301
Query: 241 KVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKE 300
VKVLFVRNLA TVTEEILEK+FS+FGKLERVKKLKDYAF+HF++R AVKAM+EMNGK+
Sbjct: 302 -VKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKD 360
Query: 301 IEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY 360
+EGE IEIV AKPPD+KRKER+A RQA+++ Y+DYYY+ PP MPPP RGRGR GGRGGY
Sbjct: 361 LEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGR-GGRGGY 419
Query: 361 GYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRG-GGRGGRGAPPPPRG 419
GYPPDYYGYEDYY DYYGYDYH+YRGGYEDPYYGY+D + V RG GGRG RGA P RG
Sbjct: 420 GYPPDYYGYEDYY-DYYGYDYHNYRGGYEDPYYGYED-FQVGARGRGGRGARGA-APSRG 476
Query: 420 RGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADG 479
RGA PPRGRAGYSQRG P G RG RG RGG AQQQRGRG RG+RG RGGNVGGKRKADG
Sbjct: 477 RGAAPPRGRAGYSQRGGP-GSARGVRGARGG-AQQQRGRGVRGARGGRGGNVGGKRKADG 534
Query: 480 YNQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK 535
YNQPDSKRRQTNN QNWGSQPIAQQPL QGGD+SGNYGY ++NQEFYQDT+GQQWK
Sbjct: 535 YNQPDSKRRQTNN-QNWGSQPIAQQPL-QGGDHSGNYGYKSENQEFYQDTFGQQWK 588
>gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 5 [Homo sapiens]
Length = 561
Score = 782 bits (2020), Expect = 0.0
Identities = 384/463 (82%), Positives = 419/463 (90%), Gaps = 10/463 (2%)
Query: 1 MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 60
MKTYRQREKQG+KV +S+KGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSG QP
Sbjct: 99 MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 158
Query: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
+GTE+FVGKIPRDL+EDELVPLFEKAGPIWDLRLMMDPL+G NRGYAF+TFC KEAAQE
Sbjct: 159 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 218
Query: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVIL 180
AVKL +++EIR GKH+GVCISVANNRLFVGSIPK+KTKE ILEEFSKVT EGL DVIL
Sbjct: 219 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVT---EGLTDVIL 275
Query: 181 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA 240
YHQPDDKKKNRGFCFLEYEDHK+AAQARRRLMSGKVKVWGNV TVEWADP+E+PDPEVMA
Sbjct: 276 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA 335
Query: 241 KVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKE 300
KVKVLFVRNLA TVTEEILEK+FS+FGKLERVKKLKDYAF+HF++R AVKAM+EMNGK+
Sbjct: 336 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKD 395
Query: 301 IEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY 360
+EGE IEIV AKPPD+KRKER+A RQA+++ Y+DYYY+ PP MPPP RGRGR GGRGGY
Sbjct: 396 LEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGR-GGRGGY 454
Query: 361 GYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRG-GGRGGRGAPPPPRG 419
GYPPDYYGYEDYY DYYGYDYH+YRGGYEDPYYGY+D + V RG GGRG RGA P RG
Sbjct: 455 GYPPDYYGYEDYY-DYYGYDYHNYRGGYEDPYYGYED-FQVGARGRGGRGARGA-APSRG 511
Query: 420 RGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRG 462
RGA PPRGRAGYSQRG P G RG RG RGG AQQQRGRG +G
Sbjct: 512 RGAAPPRGRAGYSQRGGP-GSARGVRGARGG-AQQQRGRGGKG 552
>gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 6 [Homo sapiens]
Length = 562
Score = 779 bits (2012), Expect = 0.0
Identities = 383/460 (83%), Positives = 417/460 (90%), Gaps = 10/460 (2%)
Query: 1 MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 60
MKTYRQREKQG+KV +S+KGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSG QP
Sbjct: 99 MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 158
Query: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
+GTE+FVGKIPRDL+EDELVPLFEKAGPIWDLRLMMDPL+G NRGYAF+TFC KEAAQE
Sbjct: 159 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 218
Query: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVIL 180
AVKL +++EIR GKH+GVCISVANNRLFVGSIPK+KTKE ILEEFSKVT EGL DVIL
Sbjct: 219 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVT---EGLTDVIL 275
Query: 181 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA 240
YHQPDDKKKNRGFCFLEYEDHK+AAQARRRLMSGKVKVWGNV TVEWADP+E+PDPEVMA
Sbjct: 276 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA 335
Query: 241 KVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKE 300
KVKVLFVRNLA TVTEEILEK+FS+FGKLERVKKLKDYAF+HF++R AVKAM+EMNGK+
Sbjct: 336 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKD 395
Query: 301 IEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY 360
+EGE IEIV AKPPD+KRKER+A RQA+++ Y+DYYY+ PP MPPP RGRGR GGRGGY
Sbjct: 396 LEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGR-GGRGGY 454
Query: 361 GYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRG-GGRGGRGAPPPPRG 419
GYPPDYYGYEDYY DYYGYDYH+YRGGYEDPYYGY+D + V RG GGRG RGA P RG
Sbjct: 455 GYPPDYYGYEDYY-DYYGYDYHNYRGGYEDPYYGYED-FQVGARGRGGRGARGA-APSRG 511
Query: 420 RGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRG 459
RGA PPRGRAGYSQRG P G RG RG RGG AQQQRGRG
Sbjct: 512 RGAAPPRGRAGYSQRGGP-GSARGVRGARGG-AQQQRGRG 549
>gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 2 [Homo sapiens]
Length = 464
Score = 779 bits (2012), Expect = 0.0
Identities = 383/460 (83%), Positives = 417/460 (90%), Gaps = 10/460 (2%)
Query: 1 MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 60
MKTYRQREKQG+KV +S+KGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSG QP
Sbjct: 1 MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 60
Query: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
+GTE+FVGKIPRDL+EDELVPLFEKAGPIWDLRLMMDPL+G NRGYAF+TFC KEAAQE
Sbjct: 61 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 120
Query: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVIL 180
AVKL +++EIR GKH+GVCISVANNRLFVGSIPK+KTKE ILEEFSKVT EGL DVIL
Sbjct: 121 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVT---EGLTDVIL 177
Query: 181 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA 240
YHQPDDKKKNRGFCFLEYEDHK+AAQARRRLMSGKVKVWGNV TVEWADP+E+PDPEVMA
Sbjct: 178 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA 237
Query: 241 KVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKE 300
KVKVLFVRNLA TVTEEILEK+FS+FGKLERVKKLKDYAF+HF++R AVKAM+EMNGK+
Sbjct: 238 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKD 297
Query: 301 IEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY 360
+EGE IEIV AKPPD+KRKER+A RQA+++ Y+DYYY+ PP MPPP RGRGR GGRGGY
Sbjct: 298 LEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGR-GGRGGY 356
Query: 361 GYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRG-GGRGGRGAPPPPRG 419
GYPPDYYGYEDYY DYYGYDYH+YRGGYEDPYYGY+D + V RG GGRG RGA P RG
Sbjct: 357 GYPPDYYGYEDYY-DYYGYDYHNYRGGYEDPYYGYED-FQVGARGRGGRGARGA-APSRG 413
Query: 420 RGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRG 459
RGA PPRGRAGYSQRG P G RG RG RGG AQQQRGRG
Sbjct: 414 RGAAPPRGRAGYSQRGGP-GSARGVRGARGG-AQQQRGRG 451
>gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 3 [Homo sapiens]
Length = 527
Score = 694 bits (1791), Expect = 0.0
Identities = 351/460 (76%), Positives = 383/460 (83%), Gaps = 45/460 (9%)
Query: 1 MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 60
MKTYRQREKQG+KV +S+KGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSG QP
Sbjct: 99 MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 158
Query: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
+GTE+FVGKIPRDL+EDELVPLFEKAGPIWDLRLMMDPL+G NRGYAF+TFC KEAAQE
Sbjct: 159 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 218
Query: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVIL 180
AVKL +++EIR GKH+GVCISVANNRLFVGSIPK+KTKE ILEEFSKV TEGL DVIL
Sbjct: 219 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKV---TEGLTDVIL 275
Query: 181 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA 240
YHQPDDKKKNRGFCFLEYEDHK+AAQ
Sbjct: 276 YHQPDDKKKNRGFCFLEYEDHKTAAQ---------------------------------- 301
Query: 241 KVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKE 300
VKVLFVRNLA TVTEEILEK+FS+FGKLERVKKLKDYAF+HF++R AVKAM+EMNGK+
Sbjct: 302 -VKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKD 360
Query: 301 IEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY 360
+EGE IEIV AKPPD+KRKER+A RQA+++ Y+DYYY+ PP MPPP RGRGR GGRGGY
Sbjct: 361 LEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGR-GGRGGY 419
Query: 361 GYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRG-GGRGGRGAPPPPRG 419
GYPPDYYGYEDYY DYYGYDYH+YRGGYEDPYYGY+D + V RG GGRG RGA P RG
Sbjct: 420 GYPPDYYGYEDYY-DYYGYDYHNYRGGYEDPYYGYED-FQVGARGRGGRGARGA-APSRG 476
Query: 420 RGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRG 459
RGA PPRGRAGYSQRG P G RG RG RGG AQQQRGRG
Sbjct: 477 RGAAPPRGRAGYSQRGGP-GSARGVRGARGG-AQQQRGRG 514
>gi|148833513 RNA binding motif protein 47 isoform a [Homo sapiens]
Length = 593
Score = 365 bits (938), Expect = e-101
Identities = 209/458 (45%), Positives = 276/458 (60%), Gaps = 59/458 (12%)
Query: 12 SKVQESTKG-PDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQPGIGTEVFVGK 70
+KV E G P+EA + AL+ERTGY++ GQRKYGGPPP + G P G EVFVGK
Sbjct: 20 AKVPEGVAGAPNEAALLALMERTGYSMVQENGQRKYGGPPPG--WEGPHPQRGCEVFVGK 77
Query: 71 IPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEI 130
IPRD+YEDELVP+FE G I++LRLMMD G+NRGYAF+ +C K A+ AV+ ++YEI
Sbjct: 78 IPRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRELNNYEI 136
Query: 131 RPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKN 190
RPG+ LGVC SV N RLF+G IPK K +E ILEE +KVT EG++DVI+Y DK KN
Sbjct: 137 RPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVT---EGVLDVIVYASAADKMKN 193
Query: 191 RGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNL 250
RGF F+EYE H++AA ARR+LM G++++WG+ + V+WA+P + D +VM VK+L+VRNL
Sbjct: 194 RGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKILYVRNL 253
Query: 251 ATTVTEEILEKSFSEF--GKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEI 308
TE+ ++KSF +F G +ERVKK++DYAFVHF R AV AM+ +NG E+EG +E+
Sbjct: 254 MIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEV 313
Query: 309 VLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDY-Y 367
LAKP DK++ R + RGGG P Y Y
Sbjct: 314 TLAKPVDKEQYSRY--------------------------QKAARGGGAAEAAQQPSYVY 347
Query: 368 GYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRG 427
+ Y YYGY Y+ G D + ++RGRG G G AP P
Sbjct: 348 SCDPYTLAYYGYPYNALIGPNRDYFV---KAGSIRGRGRGAAGNRAPGP----------- 393
Query: 428 RAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRG 465
RG+ LG G GRG ++ G+G + +G
Sbjct: 394 ------RGSYLG---GYSAGRGIYSRYHEGKGKQQEKG 422
>gi|148833511 RNA binding motif protein 47 isoform b [Homo sapiens]
Length = 524
Score = 349 bits (896), Expect = 3e-96
Identities = 189/383 (49%), Positives = 247/383 (64%), Gaps = 36/383 (9%)
Query: 12 SKVQESTKG-PDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQPGIGTEVFVGK 70
+KV E G P+EA + AL+ERTGY++ GQRKYGGPPP + G P G EVFVGK
Sbjct: 20 AKVPEGVAGAPNEAALLALMERTGYSMVQENGQRKYGGPPPG--WEGPHPQRGCEVFVGK 77
Query: 71 IPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEI 130
IPRD+YEDELVP+FE G I++LRLMMD G+NRGYAF+ +C K A+ AV+ ++YEI
Sbjct: 78 IPRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRELNNYEI 136
Query: 131 RPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKN 190
RPG+ LGVC SV N RLF+G IPK K +E ILEE +KVT EG++DVI+Y DK KN
Sbjct: 137 RPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVT---EGVLDVIVYASAADKMKN 193
Query: 191 RGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNL 250
RGF F+EYE H++AA ARR+LM G++++WG+ + V+WA+P + D +VM VK+L+VRNL
Sbjct: 194 RGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKILYVRNL 253
Query: 251 ATTVTEEILEKSFSEF--GKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEI 308
TE+ ++KSF +F G +ERVKK++DYAFVHF R AV AM+ +NG E+EG +E+
Sbjct: 254 MIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEV 313
Query: 309 VLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDY-Y 367
LAKP DK++ R + RGGG P Y Y
Sbjct: 314 TLAKPVDKEQYSRY--------------------------QKAARGGGAAEAAQQPSYVY 347
Query: 368 GYEDYYDDYYGYDYHDYRGGYED 390
+ Y YYGY Y+ G D
Sbjct: 348 SCDPYTLAYYGYPYNALIGPNRD 370
>gi|21450675 RNA binding motif protein 46 [Homo sapiens]
Length = 533
Score = 339 bits (870), Expect = 3e-93
Identities = 171/303 (56%), Positives = 225/303 (74%), Gaps = 8/303 (2%)
Query: 22 DEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELV 81
+EA + AL+E+TGY + GQRK+GGPPP + G P G EVFVGKIPRD+YEDELV
Sbjct: 21 NEAALLALMEKTGYNMVQENGQRKFGGPPPG--WEGPPPPRGCEVFVGKIPRDMYEDELV 78
Query: 82 PLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCIS 141
P+FE+AG I++ RLMM+ SG+NRGYAF+ + KE AQ A+++ ++YEIRPGK +GVC+S
Sbjct: 79 PVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVS 137
Query: 142 VANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDH 201
+ N RLF+G+IPK K KE IL+E KVT EG+VDVI+Y DK KNRGF F+EYE H
Sbjct: 138 LDNCRLFIGAIPKEKKKEEILDEMKKVT---EGVVDVIVYPSATDKTKNRGFAFVEYESH 194
Query: 202 KSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEK 261
++AA ARR+L+ G ++WG+ + V+WADP +E D E M +VKVL+VRNL + TEE ++
Sbjct: 195 RAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKA 254
Query: 262 SFSEF--GKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRK 319
F++F G +ERVKKL+DYAFVHF +R AV AM MNGK I+G IE+ LAKP +K+
Sbjct: 255 EFNKFKPGAVERVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314
Query: 320 ERQ 322
RQ
Sbjct: 315 WRQ 317
>gi|20357575 apobec-1 complementation factor isoform 2 [Homo
sapiens]
Length = 594
Score = 330 bits (845), Expect = 3e-90
Identities = 165/317 (52%), Positives = 222/317 (70%), Gaps = 8/317 (2%)
Query: 23 EAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVP 82
EA ++AL++RTGY+L GQRKYGGPPP + P G E+F+GK+PRDL+EDEL+P
Sbjct: 17 EAALRALVQRTGYSLVQENGQRKYGGPPPG--WDAAPPERGCEIFIGKLPRDLFEDELIP 74
Query: 83 LFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISV 142
L EK G I+++R+MMD +G NRGYAF+TF K A+ A+K ++YEIR G+ LGVC SV
Sbjct: 75 LCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASV 133
Query: 143 ANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHK 202
N RLFVG IPK K +E IL E KVT EG+VDVI+Y DK KNRGF F+EYE H+
Sbjct: 134 DNCRLFVGGIPKTKKREEILSEMKKVT---EGVVDVIVYPSAADKTKNRGFAFVEYESHR 190
Query: 203 SAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKS 262
+AA ARR+L+ G++++WG+ + V+WA+P E D + M+ VK+L+VRNL + +EE++EK
Sbjct: 191 AAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKE 250
Query: 263 FSEF--GKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKE 320
F+ G +ERVKK++DYAFVHF +R AV+AM +NGK ++G IE+ LAKP DK
Sbjct: 251 FNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDKDSYV 310
Query: 321 RQAARQASRSTAYEDYY 337
R R T + Y
Sbjct: 311 RYTRGTGGRGTMLQGEY 327
>gi|20357572 apobec-1 complementation factor isoform 1 [Homo
sapiens]
Length = 586
Score = 330 bits (845), Expect = 3e-90
Identities = 165/317 (52%), Positives = 222/317 (70%), Gaps = 8/317 (2%)
Query: 23 EAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVP 82
EA ++AL++RTGY+L GQRKYGGPPP + P G E+F+GK+PRDL+EDEL+P
Sbjct: 17 EAALRALVQRTGYSLVQENGQRKYGGPPPG--WDAAPPERGCEIFIGKLPRDLFEDELIP 74
Query: 83 LFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISV 142
L EK G I+++R+MMD +G NRGYAF+TF K A+ A+K ++YEIR G+ LGVC SV
Sbjct: 75 LCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASV 133
Query: 143 ANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHK 202
N RLFVG IPK K +E IL E KVT EG+VDVI+Y DK KNRGF F+EYE H+
Sbjct: 134 DNCRLFVGGIPKTKKREEILSEMKKVT---EGVVDVIVYPSAADKTKNRGFAFVEYESHR 190
Query: 203 SAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKS 262
+AA ARR+L+ G++++WG+ + V+WA+P E D + M+ VK+L+VRNL + +EE++EK
Sbjct: 191 AAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKE 250
Query: 263 FSEF--GKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKE 320
F+ G +ERVKK++DYAFVHF +R AV+AM +NGK ++G IE+ LAKP DK
Sbjct: 251 FNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDKDSYV 310
Query: 321 RQAARQASRSTAYEDYY 337
R R T + Y
Sbjct: 311 RYTRGTGGRGTMLQGEY 327
>gi|20357578 apobec-1 complementation factor isoform 3 [Homo
sapiens]
Length = 594
Score = 313 bits (803), Expect = 2e-85
Identities = 157/303 (51%), Positives = 210/303 (69%), Gaps = 8/303 (2%)
Query: 37 LDVTTGQRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLM 96
L+ GQRKYGGPPP + P G E+F+GK+PRDL+EDEL+PL EK G I+++R+M
Sbjct: 39 LEKENGQRKYGGPPPG--WDAAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMM 96
Query: 97 MDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNK 156
MD +G NRGYAF+TF K A+ A+K ++YEIR G+ LGVC SV N RLFVG IPK K
Sbjct: 97 MD-FNGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTK 155
Query: 157 TKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKV 216
+E IL E KVT EG+VDVI+Y DK KNRGF F+EYE H++AA ARR+L+ G++
Sbjct: 156 KREEILSEMKKVT---EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRI 212
Query: 217 KVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEF--GKLERVKK 274
++WG+ + V+WA+P E D + M+ VK+L+VRNL + +EE++EK F+ G +ERVKK
Sbjct: 213 QLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK 272
Query: 275 LKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYE 334
++DYAFVHF +R AV+AM +NGK ++G IE+ LAKP DK R R T +
Sbjct: 273 IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRGTMLQ 332
Query: 335 DYY 337
Y
Sbjct: 333 GEY 335
>gi|34740339 dead end homolog 1 [Homo sapiens]
Length = 353
Score = 132 bits (332), Expect = 8e-31
Identities = 76/215 (35%), Positives = 116/215 (53%), Gaps = 8/215 (3%)
Query: 16 ESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDL 75
E ++A ++A + TG L GQRKYGGPPP V G P G+EVF+G++P+D+
Sbjct: 12 ERVNPENKAALEAWVRETGIRLVQVNGQRKYGGPPPGWV--GSPPPAGSEVFIGRLPQDV 69
Query: 76 YEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKH 135
YE +L+PLF++ G +++ RLMM SG NRG+A+ + + AQ A+ ++ +RP
Sbjct: 70 YEHQLIPLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQAAIATLHNHPLRPSCP 128
Query: 136 LGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCF 195
L VC S L V +P N T+ +L + L GL + L P
Sbjct: 129 LLVCRSTEKCELSVDGLPPNLTRSALL---LALQPLGPGLQEARLLPSPGPAPGQ--IAL 183
Query: 196 LEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 230
L++ H++AA A++ L+ G+ + G V VEW P
Sbjct: 184 LKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKP 218
>gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo
sapiens]
Length = 370
Score = 87.4 bits (215), Expect = 3e-17
Identities = 72/276 (26%), Positives = 138/276 (50%), Gaps = 32/276 (11%)
Query: 66 VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLC 125
++VG + D+ ED L F GP+ +R+ D ++ ++ GYA++ F AQ+A+
Sbjct: 12 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 126 DSYEIRPGKHLGVCISVAN--------NRLFVGSIPKNKTKENILEEFSKVTGLTEGLVD 177
+ ++I GK + + S + +F+ ++ K+ + + E FS + V
Sbjct: 72 N-FDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV- 129
Query: 178 VILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPE 237
D + ++G+ F+ +++ +A +A M+GK+ + G V V ++ + E
Sbjct: 130 ------MSDDQGSKGYAFVHFQNQSAADRAIEE-MNGKL-LKGCKVFVGRFKNRKDREAE 181
Query: 238 VMAKVKV---LFVRNLATTVTEEILEKSFSEFGKLERVK-------KLKDYAFVHFEDRG 287
+ +K ++++N + +E L+ FS++GK VK K K + FV F+
Sbjct: 182 LRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHE 241
Query: 288 AAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQA 323
AA KA++EMNG++I G+ I + A +K+ ERQA
Sbjct: 242 AAKKAVEEMNGRDINGQLIFVGRA----QKKVERQA 273
Score = 73.2 bits (178), Expect = 6e-13
Identities = 78/292 (26%), Positives = 123/292 (42%), Gaps = 59/292 (20%)
Query: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
GIG VF+ + + + L F G I ++M D ++GYAF+ F + AA
Sbjct: 96 GIGN-VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADR 152
Query: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLT-------- 172
A+ E GK L C ++FVG K +E L SK + T
Sbjct: 153 AI------EEMNGKLLKGC------KVFVGRFKNRKDREAELR--SKASEFTNVYIKNFG 198
Query: 173 -----EGLVDVILYH--------QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVW 219
E L DV + D K++GF F+ ++ H++A +A M+G+ +
Sbjct: 199 GDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEE-MNGR-DIN 256
Query: 220 GNVVTVEWADPVEEPDPEVMAKVKVL-------------FVRNLATTVTEEILEKSFSEF 266
G ++ V A E E+ + L +++NL T+ +E L FS F
Sbjct: 257 GQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSF 316
Query: 267 GKLERVKKL------KDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAK 312
G + RVK + K + + F A KAM EMNG+ + + + I LA+
Sbjct: 317 GSISRVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 368
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 86.7 bits (213), Expect = 5e-17
Identities = 82/255 (32%), Positives = 104/255 (40%), Gaps = 59/255 (23%)
Query: 245 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 296
LF+ L T E+ LE F ++G++ V +KD +AFV FE A A +M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 297 NGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRG-RGRGG 355
NGK ++G+ I++ A P + R PPPR P RG RG G
Sbjct: 70 NGKSLDGKAIKVEQATKPSFESGRRGPP---------------PPPRSRGPPRGLRGGRG 114
Query: 356 GRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPP 415
G GG PP RGG+ D D GY++ RG P
Sbjct: 115 GSGGTRGPPS-------------------RGGHMD-----DGGYSMNFNMS--SSRGPLP 148
Query: 416 PPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNR-----GGN 470
RG PPPR +R AP GP R S G GG A RGR S G R +
Sbjct: 149 VKRG---PPPRSGGPPPKRSAPSGPVRSS-SGMGGRAPVSRGRDSYGGPPRREPLPSRRD 204
Query: 471 VGGKRKADGYNQPDS 485
V + DGY+ DS
Sbjct: 205 VYLSPRDDGYSTKDS 219
Score = 58.2 bits (139), Expect = 2e-08
Identities = 48/134 (35%), Positives = 54/134 (40%), Gaps = 17/134 (12%)
Query: 319 KERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYG 378
++R + S + + Y + R PP RG PP YG YDDY
Sbjct: 268 RDRDYSDHPSGGSYRDSYESYGNSRSAPPTRG------------PPPSYGGSSRYDDYSS 315
Query: 379 YDYHDYRGGYEDPYYGYDDGYAVRGRGG-GRGGRGAPPPPRGRGAPPPRGRAGYSQRGAP 437
D GG D Y GR GR RG PP RG PPPR S RGAP
Sbjct: 316 S--RDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSME-RGYPPPRDSYSSSSRGAP 372
Query: 438 LGPPR-GSRGGRGG 450
G R GSR RGG
Sbjct: 373 RGGGRGGSRSDRGG 386
Score = 37.7 bits (86), Expect = 0.027
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 65 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVK 123
++F+G + + E L +F K G I ++ LM D + ++RG+AF+TF A++A +
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Score = 32.0 bits (71), Expect = 1.5
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 146 RLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAA 205
+LF+G + +T E LE V G +V+V+L + + K+RGF F+ +E A
Sbjct: 9 KLFIGGL-NTETNEKALEA---VFGKYGRIVEVLLM-KDRETNKSRGFAFVTFESPADAK 63
Query: 206 QARRRLMSGKVKVWGNVVTVEWA 228
A R M+GK + G + VE A
Sbjct: 64 DAARD-MNGK-SLDGKAIKVEQA 84
>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 85.9 bits (211), Expect = 9e-17
Identities = 88/304 (28%), Positives = 123/304 (40%), Gaps = 65/304 (21%)
Query: 245 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 296
LF+ L T E+ LE F ++G++ V +KD +AFV FE A A +M
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 297 NGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRG-G 355
NGK ++G+ I++ A P +R PPPR P RG G G G
Sbjct: 70 NGKSLDGKAIKVEQATKPSFERGRHGPP---------------PPPRSRGPPRGFGAGRG 114
Query: 356 GRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPP 415
G GG PP RGG+ D D GY++ RG P
Sbjct: 115 GSGGTRGPPS-------------------RGGHMD-----DGGYSMNFNMS--SSRGPLP 148
Query: 416 PPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNR-----GGN 470
RG PPPR +R AP G R S G GG A RGR S G R +
Sbjct: 149 VKRG---PPPRSGGPSPKRSAPSGLVRSS-SGMGGRAPLSRGRDSYGGPPRREPLPSRRD 204
Query: 471 VGGKRKADGYNQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYS-GNYGYNNDNQEFYQDT 529
V + DGY+ DS + +++ S + DY+ +YG+++ ++
Sbjct: 205 VYLSPRDDGYSTKDS-----YSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRG 259
Query: 530 YGQQ 533
YG +
Sbjct: 260 YGDR 263
Score = 42.7 bits (99), Expect = 8e-04
Identities = 51/159 (32%), Positives = 56/159 (35%), Gaps = 30/159 (18%)
Query: 329 RSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYY------GYEDYYDDYYGYDYH 382
R Y DY H R P RG G R GYG DY Y D Y+ Y
Sbjct: 239 RDYTYRDYG-HSSSRDDYPSRGYG---DRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSA 294
Query: 383 DYRGGYEDPYYG---YDDGYAVR-GRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPL 438
G Y G YDD + R G GG R + R G +RG P
Sbjct: 295 PLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCD----RVGRQERGLPP 350
Query: 439 GPPRG--------SRGGRGGPAQQQRGRGSRGSRGNRGG 469
RG S RG P RG G GSR +RGG
Sbjct: 351 SVERGYPSSRDSYSSSSRGAP----RGAGPGGSRSDRGG 385
Score = 36.2 bits (82), Expect = 0.077
Identities = 18/59 (30%), Positives = 35/59 (59%)
Query: 65 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVK 123
++F+G + + E L +F K G I ++ L+ D + ++RG+AF+TF A++A +
Sbjct: 9 KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67
Score = 32.0 bits (71), Expect = 1.5
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 146 RLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAA 205
+LF+G + +T E LE V G +V+V+L + + K+RGF F+ +E A
Sbjct: 9 KLFIGGL-NTETNEKALET---VFGKYGRIVEVLLI-KDRETNKSRGFAFVTFESPADAK 63
Query: 206 QARRRLMSGKVKVWGNVVTVEWA 228
A R M+GK + G + VE A
Sbjct: 64 DAARD-MNGK-SLDGKAIKVEQA 84
>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 85.9 bits (211), Expect = 9e-17
Identities = 88/304 (28%), Positives = 123/304 (40%), Gaps = 65/304 (21%)
Query: 245 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 296
LF+ L T E+ LE F ++G++ V +KD +AFV FE A A +M
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 297 NGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRG-G 355
NGK ++G+ I++ A P +R PPPR P RG G G G
Sbjct: 70 NGKSLDGKAIKVEQATKPSFERGRHGPP---------------PPPRSRGPPRGFGAGRG 114
Query: 356 GRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPP 415
G GG PP RGG+ D D GY++ RG P
Sbjct: 115 GSGGTRGPPS-------------------RGGHMD-----DGGYSMNFNMS--SSRGPLP 148
Query: 416 PPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNR-----GGN 470
RG PPPR +R AP G R S G GG A RGR S G R +
Sbjct: 149 VKRG---PPPRSGGPSPKRSAPSGLVRSS-SGMGGRAPLSRGRDSYGGPPRREPLPSRRD 204
Query: 471 VGGKRKADGYNQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYS-GNYGYNNDNQEFYQDT 529
V + DGY+ DS + +++ S + DY+ +YG+++ ++
Sbjct: 205 VYLSPRDDGYSTKDS-----YSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRG 259
Query: 530 YGQQ 533
YG +
Sbjct: 260 YGDR 263
Score = 42.7 bits (99), Expect = 8e-04
Identities = 51/159 (32%), Positives = 56/159 (35%), Gaps = 30/159 (18%)
Query: 329 RSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYY------GYEDYYDDYYGYDYH 382
R Y DY H R P RG G R GYG DY Y D Y+ Y
Sbjct: 239 RDYTYRDYG-HSSSRDDYPSRGYG---DRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSA 294
Query: 383 DYRGGYEDPYYG---YDDGYAVR-GRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPL 438
G Y G YDD + R G GG R + R G +RG P
Sbjct: 295 PLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCD----RVGRQERGLPP 350
Query: 439 GPPRG--------SRGGRGGPAQQQRGRGSRGSRGNRGG 469
RG S RG P RG G GSR +RGG
Sbjct: 351 SVERGYPSSRDSYSSSSRGAP----RGAGPGGSRSDRGG 385
Score = 36.2 bits (82), Expect = 0.077
Identities = 18/59 (30%), Positives = 35/59 (59%)
Query: 65 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVK 123
++F+G + + E L +F K G I ++ L+ D + ++RG+AF+TF A++A +
Sbjct: 9 KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67
Score = 32.0 bits (71), Expect = 1.5
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 146 RLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAA 205
+LF+G + +T E LE V G +V+V+L + + K+RGF F+ +E A
Sbjct: 9 KLFIGGL-NTETNEKALET---VFGKYGRIVEVLLI-KDRETNKSRGFAFVTFESPADAK 63
Query: 206 QARRRLMSGKVKVWGNVVTVEWA 228
A R M+GK + G + VE A
Sbjct: 64 DAARD-MNGK-SLDGKAIKVEQA 84
>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
sapiens]
Length = 631
Score = 85.9 bits (211), Expect = 9e-17
Identities = 73/276 (26%), Positives = 138/276 (50%), Gaps = 32/276 (11%)
Query: 66 VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLC 125
++VG + D+ E L F AGP+ +R+ D ++ ++ GYA++ F A+ A+
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 126 DSYEIRPGKHLGVCISVAN--------NRLFVGSIPKNKTKENILEEFSKVTGLTEGLVD 177
++++ GK + + S + +F+ ++ K+ + + + FS + V
Sbjct: 73 -NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 178 VILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPE 237
D+ ++G+ F+ +E ++A +A + M+G + + V V +E + E
Sbjct: 132 C-------DENGSKGYAFVHFETQEAADKAIEK-MNGML-LNDRKVFVGRFKSRKEREAE 182
Query: 238 VMAKVKV---LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD-------YAFVHFEDRG 287
+ AK K ++++N V +E L++ FS+FGK VK ++D + FV +E
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHE 242
Query: 288 AAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQA 323
A KA++EMNGKEI G+ I + A +K+ ERQA
Sbjct: 243 DANKAVEEMNGKEISGKIIFVGRA----QKKVERQA 274
Score = 77.0 bits (188), Expect = 4e-14
Identities = 79/301 (26%), Positives = 135/301 (44%), Gaps = 59/301 (19%)
Query: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
G+G VF+ + + + L F G I +++ D ++GYAF+ F +EAA +
Sbjct: 97 GVGN-VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADK 153
Query: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENIL----EEFSKV--TGLTEG 174
A++ K G+ ++ + ++FVG K +E L +EF+ V E
Sbjct: 154 AIE----------KMNGMLLN--DRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEE 201
Query: 175 LVDVILYH-------------QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN 221
+ D L D K++GF F+ YE H+ A +A M+GK ++ G
Sbjct: 202 VDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE-MNGK-EISGK 259
Query: 222 VVTVEWADPVEEPDPEVMAKVKVL-------------FVRNLATTVTEEILEKSFSEFGK 268
++ V A E E+ K + L +++NL T+ +E L K FS FG
Sbjct: 260 IIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGS 319
Query: 269 LERVK------KLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQ 322
+ K + K + FV F A KA+ EMNG+ + + + + LA ++++ER+
Sbjct: 320 ITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA----QRKEERK 375
Query: 323 A 323
A
Sbjct: 376 A 376
>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
sapiens]
Length = 644
Score = 85.9 bits (211), Expect = 9e-17
Identities = 73/276 (26%), Positives = 138/276 (50%), Gaps = 32/276 (11%)
Query: 66 VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLC 125
++VG + D+ E L F AGP+ +R+ D ++ ++ GYA++ F A+ A+
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 126 DSYEIRPGKHLGVCISVAN--------NRLFVGSIPKNKTKENILEEFSKVTGLTEGLVD 177
++++ GK + + S + +F+ ++ K+ + + + FS + V
Sbjct: 73 -NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 178 VILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPE 237
D+ ++G+ F+ +E ++A +A + M+G + + V V +E + E
Sbjct: 132 C-------DENGSKGYAFVHFETQEAADKAIEK-MNGML-LNDRKVFVGRFKSRKEREAE 182
Query: 238 VMAKVKV---LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD-------YAFVHFEDRG 287
+ AK K ++++N V +E L++ FS+FGK VK ++D + FV +E
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHE 242
Query: 288 AAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQA 323
A KA++EMNGKEI G+ I + A +K+ ERQA
Sbjct: 243 DANKAVEEMNGKEISGKIIFVGRA----QKKVERQA 274
Score = 77.0 bits (188), Expect = 4e-14
Identities = 79/301 (26%), Positives = 135/301 (44%), Gaps = 59/301 (19%)
Query: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
G+G VF+ + + + L F G I +++ D ++GYAF+ F +EAA +
Sbjct: 97 GVGN-VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADK 153
Query: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENIL----EEFSKV--TGLTEG 174
A++ K G+ ++ + ++FVG K +E L +EF+ V E
Sbjct: 154 AIE----------KMNGMLLN--DRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEE 201
Query: 175 LVDVILYH-------------QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN 221
+ D L D K++GF F+ YE H+ A +A M+GK ++ G
Sbjct: 202 VDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE-MNGK-EISGK 259
Query: 222 VVTVEWADPVEEPDPEVMAKVKVL-------------FVRNLATTVTEEILEKSFSEFGK 268
++ V A E E+ K + L +++NL T+ +E L K FS FG
Sbjct: 260 IIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGS 319
Query: 269 LERVK------KLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQ 322
+ K + K + FV F A KA+ EMNG+ + + + + LA ++++ER+
Sbjct: 320 ITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA----QRKEERK 375
Query: 323 A 323
A
Sbjct: 376 A 376
>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
sapiens]
Length = 660
Score = 85.9 bits (211), Expect = 9e-17
Identities = 73/276 (26%), Positives = 138/276 (50%), Gaps = 32/276 (11%)
Query: 66 VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLC 125
++VG + D+ E L F AGP+ +R+ D ++ ++ GYA++ F A+ A+
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 126 DSYEIRPGKHLGVCISVAN--------NRLFVGSIPKNKTKENILEEFSKVTGLTEGLVD 177
++++ GK + + S + +F+ ++ K+ + + + FS + V
Sbjct: 73 -NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 178 VILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPE 237
D+ ++G+ F+ +E ++A +A + M+G + + V V +E + E
Sbjct: 132 C-------DENGSKGYAFVHFETQEAADKAIEK-MNGML-LNDRKVFVGRFKSRKEREAE 182
Query: 238 VMAKVKV---LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD-------YAFVHFEDRG 287
+ AK K ++++N V +E L++ FS+FGK VK ++D + FV +E
Sbjct: 183 LGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHE 242
Query: 288 AAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQA 323
A KA++EMNGKEI G+ I + A +K+ ERQA
Sbjct: 243 DANKAVEEMNGKEISGKIIFVGRA----QKKVERQA 274
Score = 77.0 bits (188), Expect = 4e-14
Identities = 79/301 (26%), Positives = 135/301 (44%), Gaps = 59/301 (19%)
Query: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
G+G VF+ + + + L F G I +++ D ++GYAF+ F +EAA +
Sbjct: 97 GVGN-VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADK 153
Query: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENIL----EEFSKV--TGLTEG 174
A++ K G+ ++ + ++FVG K +E L +EF+ V E
Sbjct: 154 AIE----------KMNGMLLN--DRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEE 201
Query: 175 LVDVILYH-------------QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN 221
+ D L D K++GF F+ YE H+ A +A M+GK ++ G
Sbjct: 202 VDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE-MNGK-EISGK 259
Query: 222 VVTVEWADPVEEPDPEVMAKVKVL-------------FVRNLATTVTEEILEKSFSEFGK 268
++ V A E E+ K + L +++NL T+ +E L K FS FG
Sbjct: 260 IIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGS 319
Query: 269 LERVK------KLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQ 322
+ K + K + FV F A KA+ EMNG+ + + + + LA ++++ER+
Sbjct: 320 ITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA----QRKEERK 375
Query: 323 A 323
A
Sbjct: 376 A 376
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 85.9 bits (211), Expect = 9e-17
Identities = 102/388 (26%), Positives = 143/388 (36%), Gaps = 74/388 (19%)
Query: 146 RLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEY---EDHK 202
+LF+G + T +++ E F K LT D ++ P K+ +RGF F+ Y E+
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLT----DCVVMRDPQTKR-SRGFGFVTYSCVEEVD 90
Query: 203 SAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKS 262
+A AR + G+V V+ E + P VK +FV + E L
Sbjct: 91 AAMCARPHKVDGRVVEPKRAVSRE-----DSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 145
Query: 263 FSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPP 314
F ++GK+E ++ ++D +AFV F+D K + + I G E+ K
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKY-HTINGHNCEV---KKA 201
Query: 315 DKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYD 374
K++ + A Q R ++ RG GGG G +G ++ G Y
Sbjct: 202 LSKQEMQSAGSQRGRGGGSGNFMG----------RGGNFGGGGGNFGRGGNFGGRGGYGG 251
Query: 375 DYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQR 434
GG Y G D GY G GG G G G P R GY
Sbjct: 252 G---------GGGSRGSYGGGDGGY--NGFGGDGGNYG--------GGPGYSSRGGY--- 289
Query: 435 GAPLGPPRGSRGGRGGPAQQQRGRGSRGSRG----NRGGNVGGKRKADGYNQPDSKRRQT 490
G GGP +G G G G N GGN GG G N D
Sbjct: 290 ------------GGGGPGYGNQGGGYGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSG 337
Query: 491 NNQQNWGSQPIAQ-QPLQQGGDYSGNYG 517
Q N+G G Y G YG
Sbjct: 338 QQQSNYGPMKGGSFGGRSSGSPYGGGYG 365
Score = 59.7 bits (143), Expect = 7e-09
Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 31/155 (20%)
Query: 65 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITF-CGKEA------ 117
++F+G + + +D L FEK G + D +M DP + ++RG+ F+T+ C +E
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 118 -----------AQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFS 166
+ AV DS ++PG HL V ++FVG I ++ + N+ + F
Sbjct: 96 RPHKVDGRVVEPKRAVSREDS--VKPGAHLTV------KKIFVGGIKEDTEEYNLRDYFE 147
Query: 167 KVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDH 201
K G ++ I + K RGF F+ ++DH
Sbjct: 148 KY-----GKIETIEVMEDRQSGKKRGFAFVTFDDH 177
Score = 44.7 bits (104), Expect = 2e-04
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 52 DSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFIT 111
DSV G + ++FVG I D E L FEK G I + +M D SG+ RG+AF+T
Sbjct: 115 DSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVT 173
Query: 112 FCGKEAAQEAV 122
F + + V
Sbjct: 174 FDDHDTVDKIV 184
>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 83.6 bits (205), Expect = 4e-16
Identities = 71/275 (25%), Positives = 137/275 (49%), Gaps = 32/275 (11%)
Query: 66 VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLC 125
++VG + D+ E L F AGPI +R+ D ++ + YA++ F + A+ A+
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 126 DSYEIRPGKHLGVCISVAN--------NRLFVGSIPKNKTKENILEEFSKVTGLTEGLVD 177
+ +++ GK + + S + +FV ++ K+ + + + S +
Sbjct: 73 N-FDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVS-------AFGN 124
Query: 178 VILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPE 237
++ + D+ ++G+ F+ +E H++A +A ++ M+G + + G V V +E + E
Sbjct: 125 ILSCNVVCDENGSKGYGFVHFETHEAAERAIKK-MNGML-LNGRKVFVGQFKSRKEREAE 182
Query: 238 VMAKVKV---LFVRNLATTVTEEILEKSFSEFGKLERVK-------KLKDYAFVHFEDRG 287
+ A+ K ++++N + +E L+ F +FG VK K K + FV FE
Sbjct: 183 LGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 288 AAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQ 322
A KA+DEMNGKE+ G++I + A +K+ ERQ
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRA----QKKVERQ 273
Score = 67.0 bits (162), Expect = 4e-11
Identities = 79/301 (26%), Positives = 130/301 (43%), Gaps = 59/301 (19%)
Query: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
G+G +FV + + + L G I ++ D ++GY F+ F EAA+
Sbjct: 97 GVGN-IFVKNLDKSINNKALYDTVSAFGNILSCNVVCD--ENGSKGYGFVHFETHEAAER 153
Query: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENIL----EEFSKVTGLTEG-- 174
A+K K G+ ++ ++FVG K +E L +EF V G
Sbjct: 154 AIK----------KMNGMLLN--GRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGED 201
Query: 175 -----LVDVILYHQP--------DDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN 221
L D+ P D+ K++GF F+ +E H+ A +A M+GK ++ G
Sbjct: 202 MDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE-MNGK-ELNGK 259
Query: 222 VVTVEWADPVEEPDPEVMA-------------KVKVLFVRNLATTVTEEILEKSFSEFGK 268
+ V A E E+ +V L+V+NL + +E L K+FS FG
Sbjct: 260 QIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGT 319
Query: 269 LERVK------KLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQ 322
+ K + K + FV F A KA+ EMNG+ + + + + LA ++++ERQ
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA----QRKEERQ 375
Query: 323 A 323
A
Sbjct: 376 A 376
>gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo
sapiens]
Length = 485
Score = 83.2 bits (204), Expect = 6e-16
Identities = 58/198 (29%), Positives = 104/198 (52%), Gaps = 19/198 (9%)
Query: 47 GGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRG 106
G PP G++ ++FVG+IPR L E +L PLFE+ G I++L ++ DP +G ++G
Sbjct: 28 GPEPPGGQPDGMKDLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKG 87
Query: 107 YAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANN--------RLFVGSIPKNKTK 158
AF+T+C +++A +A + PG + + A++ +LFVG + K +++
Sbjct: 88 CAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSE 147
Query: 159 ENILEEFSKVTGLTEGLVD-VILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVK 217
E++L F G++D + PD K G F+++ H + AQA + G
Sbjct: 148 EDVLRLFQPF-----GVIDECTVLRGPDGSSK--GCAFVKFSSH-TEAQAAIHALHGSQT 199
Query: 218 VWG--NVVTVEWADPVEE 233
+ G + + V++AD +E
Sbjct: 200 MPGASSSLVVKFADTDKE 217
Score = 32.7 bits (73), Expect = 0.85
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 245 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 296
LF+ +L + L + F FG + K D + FV F++ +A A+ M
Sbjct: 402 LFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAM 461
Query: 297 NGKEIEGEEIEIVLAKPPD 315
NG +I + +++ L +P D
Sbjct: 462 NGFQIGMKRLKVQLKRPKD 480
Score = 29.3 bits (64), Expect = 9.4
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 230 PVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFV 281
P +PD LFV + + E+ L+ F +FG++ + LKD AF+
Sbjct: 32 PGGQPDGMKDLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFL 91
Query: 282 HFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRK 319
+ R +A+KA ++ ++ + KP D + +
Sbjct: 92 TYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESR 129
>gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo
sapiens]
Length = 614
Score = 82.8 bits (203), Expect = 7e-16
Identities = 79/270 (29%), Positives = 134/270 (49%), Gaps = 22/270 (8%)
Query: 66 VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLC 125
++VG + D+ E L F AGPI +R+ D + ++ GYA+I F A+ A+
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 126 DSYEIRPGKHLGVCISVAN---NRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYH 182
++E+ G+ + + S + + VG+I +++I + T T G +++
Sbjct: 73 -NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFG--NILSCK 129
Query: 183 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKV 242
D+ +RGF F+ +E H++A QA M+G + + V V E + E+ A+
Sbjct: 130 VACDEHGSRGFGFVHFETHEAAQQA-INTMNGML-LNDRKVFVGHFKSRREREAELGARA 187
Query: 243 ---KVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKD-------YAFVHFEDRGAAVKA 292
++V+NL V E+ L+ FS+FGK+ VK ++D + FV+FE A KA
Sbjct: 188 LEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKA 247
Query: 293 MDEMNGKEIEGEEIEIVLAKPPDKKRKERQ 322
+ MNGKE+ G +L +KR ERQ
Sbjct: 248 VVHMNGKEVSGR----LLYAGRAQKRVERQ 273
Score = 58.2 bits (139), Expect = 2e-08
Identities = 71/313 (22%), Positives = 132/313 (42%), Gaps = 52/313 (16%)
Query: 48 GPPPDSVYSGVQPGIGTE----VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQ 103
G P ++S PG+ +F+ + + L F G I ++ D
Sbjct: 79 GQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-- 136
Query: 104 NRGYAFITFCGKEAAQEAVKLCDSYEIRPGK--------------HLGVCISVANNRLFV 149
+RG+ F+ F EAAQ+A+ + + K LG N ++V
Sbjct: 137 SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTN-IYV 195
Query: 150 GSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARR 209
++P + ++ + + FS+ + V D+ +R F F+ +E H+ A +A
Sbjct: 196 KNLPVDVDEQGLQDLFSQFGKMLSVKV------MRDNSGHSRCFGFVNFEKHEEAQKAVV 249
Query: 210 RLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKV-------------LFVRNLATTVTE 256
M+GK +V G ++ A E E+ + + L+V+NL ++ +
Sbjct: 250 H-MNGK-EVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDD 307
Query: 257 EILEKSFSEFGKLERVKKL------KDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVL 310
+ L K FS +G + K + K + FV F A KA+ EMNG+ + + + + L
Sbjct: 308 DKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367
Query: 311 AKPPDKKRKERQA 323
A ++++ER+A
Sbjct: 368 A----QRKEERKA 376
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 81.3 bits (199), Expect = 2e-15
Identities = 100/344 (29%), Positives = 138/344 (40%), Gaps = 60/344 (17%)
Query: 146 RLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAA 205
+LF+G + ++ + F LT+ +V V K++R F F+ Y + + A
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVV-----NPQTKRSRCFGFVTYSNVEEAD 62
Query: 206 QARRRLMSGKVKVWGNVVTVEWADPVEEPD-PEVMAKVKVLFVRNLATTVTEEILEKSFS 264
A + + V GN V ++ A E+ P AKVK LFV L V E L + FS
Sbjct: 63 AA---MAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFS 119
Query: 265 EFGKLERVK--------KLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDK 316
+FG +E+ + K + + FV+F++ AA KA + I+G +E+ A P K
Sbjct: 120 QFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAA-VVKFHPIQGHRVEVKKAVP--K 176
Query: 317 KRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDY 376
+ SRS+ GRGRGGGR G G Y+ Y
Sbjct: 177 EDIYSGGGGGGSRSSR-------------GGRGGRGRGGGRDQNGLSK---GGGGGYNSY 220
Query: 377 YGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGA 436
GY GG G GY G GGG G G G G YSQ +
Sbjct: 221 GGY------GG------GGGGGYNAYGGGGGGSSYGGSDYGNGFG-----GFGSYSQHQS 263
Query: 437 PLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGY 480
GP + GG GG + S G R N G GG GY
Sbjct: 264 SYGPMKSGGGGGGGGS-------SWGGRSNSGPYRGGYGGGGGY 300
Score = 42.0 bits (97), Expect = 0.001
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 28 ALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKA 87
A + + + +D T + K DS G + ++FVG + D+ E +L+ F +
Sbjct: 63 AAMAASPHAVDGNTVELKRAVSREDSARPGAHAKV-KKLFVGGLKGDVAEGDLIEHFSQF 121
Query: 88 GPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEA 121
G + ++ D SG+ RG+ F+ F +AA +A
Sbjct: 122 GTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKA 155
Score = 32.3 bits (72), Expect = 1.1
Identities = 17/38 (44%), Positives = 18/38 (47%)
Query: 444 SRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGYN 481
S GG GG + GRG RG G R N K GYN
Sbjct: 181 SGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYN 218
>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
Length = 636
Score = 79.7 bits (195), Expect = 6e-15
Identities = 71/275 (25%), Positives = 134/275 (48%), Gaps = 32/275 (11%)
Query: 66 VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLC 125
++VG + D+ E L F AGPI +R+ D ++ ++ GYA++ F A+ A+
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 126 DSYEIRPGKHLGVCISVAN--------NRLFVGSIPKNKTKENILEEFSKVTGLTEGLVD 177
+ +++ GK + + S + +F+ ++ K+ + + + FS + V
Sbjct: 73 N-FDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 178 VILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPE 237
D+ ++G+ F+ +E ++A +A + M+G + + V V +E + E
Sbjct: 132 C-------DENGSKGYGFVHFETQEAAERAIEK-MNGML-LNDRKVFVGRFKSRKEREAE 182
Query: 238 VMAKVKV---LFVRNLATTVTEEILEKSFSEFGKLERVK-------KLKDYAFVHFEDRG 287
+ A+ K ++++N + +E L+ F +FG VK K K + FV FE
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 288 AAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQ 322
A KA+DEMNGKE+ G++I + A +K+ ERQ
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRA----QKKVERQ 273
Score = 70.5 bits (171), Expect = 4e-12
Identities = 78/301 (25%), Positives = 134/301 (44%), Gaps = 59/301 (19%)
Query: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
G+G +F+ + + + L F G I +++ D ++GY F+ F +EAA+
Sbjct: 97 GVGN-IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAER 153
Query: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENIL----EEFSKVTGLTEG-- 174
A++ K G+ ++ + ++FVG K +E L +EF+ V G
Sbjct: 154 AIE----------KMNGMLLN--DRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGED 201
Query: 175 -----LVDVILYHQP--------DDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN 221
L D+ P D+ K++GF F+ +E H+ A +A M+GK ++ G
Sbjct: 202 MDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE-MNGK-ELNGK 259
Query: 222 VVTVEWADPVEEPDPEVMAKVKV-------------LFVRNLATTVTEEILEKSFSEFGK 268
+ V A E E+ K + L+V+NL + +E L K FS FG
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 269 LERVK------KLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQ 322
+ K + K + FV F A KA+ EMNG+ + + + + LA ++++ERQ
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA----QRKEERQ 375
Query: 323 A 323
A
Sbjct: 376 A 376
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.138 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,202,432
Number of Sequences: 37866
Number of extensions: 1732072
Number of successful extensions: 20141
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 752
Number of HSP's that attempted gapping in prelim test: 8733
Number of HSP's gapped (non-prelim): 6683
length of query: 535
length of database: 18,247,518
effective HSP length: 107
effective length of query: 428
effective length of database: 14,195,856
effective search space: 6075826368
effective search space used: 6075826368
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.