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Search of human proteins with 156151392
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform
4 [Homo sapiens]
(532 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4... 1118 0.0
gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [... 1118 0.0
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3... 1113 0.0
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1... 1113 0.0
gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting ... 922 0.0
gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting ... 837 0.0
gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting ... 788 0.0
gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting ... 785 0.0
gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting ... 785 0.0
gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting ... 699 0.0
gi|148833513 RNA binding motif protein 47 isoform a [Homo sapiens] 371 e-102
gi|148833511 RNA binding motif protein 47 isoform b [Homo sapiens] 355 7e-98
gi|21450675 RNA binding motif protein 46 [Homo sapiens] 345 8e-95
gi|20357575 apobec-1 complementation factor isoform 2 [Homo sapi... 335 6e-92
gi|20357572 apobec-1 complementation factor isoform 1 [Homo sapi... 335 6e-92
gi|20357578 apobec-1 complementation factor isoform 3 [Homo sapi... 319 5e-87
gi|34740339 dead end homolog 1 [Homo sapiens] 136 4e-32
gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo s... 90 6e-18
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... 87 5e-17
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... 87 5e-17
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... 87 5e-17
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 87 5e-17
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 86 8e-17
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 86 8e-17
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 86 1e-16
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens] 85 1e-16
gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo sa... 84 2e-16
gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo s... 83 7e-16
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 82 2e-15
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] 80 4e-15
>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
[Homo sapiens]
Length = 532
Score = 1118 bits (2893), Expect = 0.0
Identities = 532/532 (100%), Positives = 532/532 (100%)
Query: 1 MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 60
MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP
Sbjct: 1 MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 60
Query: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE
Sbjct: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
Query: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQ 180
AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQ
Sbjct: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQ 180
Query: 181 PDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVK 240
PDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVK
Sbjct: 181 PDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVK 240
Query: 241 VLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 300
VLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG
Sbjct: 241 VLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 300
Query: 301 EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYP 360
EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYP
Sbjct: 301 EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYP 360
Query: 361 PDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGAP 420
PDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGAP
Sbjct: 361 PDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGAP 420
Query: 421 PPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGYNQP 480
PPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGYNQP
Sbjct: 421 PPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGYNQP 480
Query: 481 DSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK 532
DSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK
Sbjct: 481 DSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK 532
>gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2
[Homo sapiens]
Length = 633
Score = 1118 bits (2893), Expect = 0.0
Identities = 532/532 (100%), Positives = 532/532 (100%)
Query: 1 MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 60
MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP
Sbjct: 102 MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 161
Query: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE
Sbjct: 162 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 221
Query: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQ 180
AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQ
Sbjct: 222 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQ 281
Query: 181 PDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVK 240
PDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVK
Sbjct: 282 PDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVK 341
Query: 241 VLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 300
VLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG
Sbjct: 342 VLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 401
Query: 301 EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYP 360
EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYP
Sbjct: 402 EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYP 461
Query: 361 PDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGAP 420
PDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGAP
Sbjct: 462 PDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGAP 521
Query: 421 PPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGYNQP 480
PPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGYNQP
Sbjct: 522 PPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGYNQP 581
Query: 481 DSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK 532
DSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK
Sbjct: 582 DSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK 633
>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
[Homo sapiens]
Length = 535
Score = 1113 bits (2879), Expect = 0.0
Identities = 532/535 (99%), Positives = 532/535 (99%), Gaps = 3/535 (0%)
Query: 1 MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 60
MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP
Sbjct: 1 MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 60
Query: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE
Sbjct: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
Query: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVT---EGLVDVIL 177
AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVT EGLVDVIL
Sbjct: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVIL 180
Query: 178 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA 237
YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA
Sbjct: 181 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA 240
Query: 238 KVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKE 297
KVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKE
Sbjct: 241 KVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKE 300
Query: 298 IEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY 357
IEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY
Sbjct: 301 IEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY 360
Query: 358 GYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGR 417
GYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGR
Sbjct: 361 GYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGR 420
Query: 418 GAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGY 477
GAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGY
Sbjct: 421 GAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGY 480
Query: 478 NQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK 532
NQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK
Sbjct: 481 NQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK 535
>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
[Homo sapiens]
Length = 636
Score = 1113 bits (2879), Expect = 0.0
Identities = 532/535 (99%), Positives = 532/535 (99%), Gaps = 3/535 (0%)
Query: 1 MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 60
MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP
Sbjct: 102 MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 161
Query: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE
Sbjct: 162 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 221
Query: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVT---EGLVDVIL 177
AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVT EGLVDVIL
Sbjct: 222 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVIL 281
Query: 178 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA 237
YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA
Sbjct: 282 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA 341
Query: 238 KVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKE 297
KVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKE
Sbjct: 342 KVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKE 401
Query: 298 IEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY 357
IEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY
Sbjct: 402 IEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGY 461
Query: 358 GYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGR 417
GYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGR
Sbjct: 462 GYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGR 521
Query: 418 GAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGY 477
GAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGY
Sbjct: 522 GAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGY 581
Query: 478 NQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK 532
NQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK
Sbjct: 582 NQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK 636
>gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 1 [Homo sapiens]
Length = 623
Score = 922 bits (2382), Expect = 0.0
Identities = 449/533 (84%), Positives = 488/533 (91%), Gaps = 9/533 (1%)
Query: 1 MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 60
MKTYRQREKQG+KV +S+KGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSG QP
Sbjct: 99 MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 158
Query: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
+GTE+FVGKIPRDL+EDELVPLFEKAGPIWDLRLMMDPL+G NRGYAF+TFC KEAAQE
Sbjct: 159 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 218
Query: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQ 180
AVKL +++EIR GKH+GVCISVANNRLFVGSIPK+KTKE ILEEFSKVTEGL DVILYHQ
Sbjct: 219 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 278
Query: 181 PDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVK 240
PDDKKKNRGFCFLEYEDHK+AAQARRRLMSGKVKVWGNV TVEWADP+E+PDPEVMAKVK
Sbjct: 279 PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK 338
Query: 241 VLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 300
VLFVRNLA TVTEEILEK+FS+FGKLERVKKLKDYAF+HF++R AVKAM+EMNGK++EG
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 398
Query: 301 EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYP 360
E IEIV AKPPD+KRKER+A RQA+++ Y+DYYY+ PP MPPP RGRGR GGRGGYGYP
Sbjct: 399 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGR-GGRGGYGYP 457
Query: 361 PDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRG-GGRGGRGAPPPPRGRGA 419
PDYYGYEDYY DYYGYDYH+YRGGYEDPYYGY+D + V RG GGRG RGA P RGRGA
Sbjct: 458 PDYYGYEDYY-DYYGYDYHNYRGGYEDPYYGYED-FQVGARGRGGRGARGA-APSRGRGA 514
Query: 420 PPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGYNQ 479
PPRGRAGYSQRG P G RG RG RGG AQQQRGRG RG+RG RGGNVGGKRKADGYNQ
Sbjct: 515 APPRGRAGYSQRGGP-GSARGVRGARGG-AQQQRGRGVRGARGGRGGNVGGKRKADGYNQ 572
Query: 480 PDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK 532
PDSKRRQTNN QNWGSQPIAQQPL QGGD+SGNYGY ++NQEFYQDT+GQQWK
Sbjct: 573 PDSKRRQTNN-QNWGSQPIAQQPL-QGGDHSGNYGYKSENQEFYQDTFGQQWK 623
>gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 4 [Homo sapiens]
Length = 588
Score = 837 bits (2161), Expect = 0.0
Identities = 417/533 (78%), Positives = 454/533 (85%), Gaps = 44/533 (8%)
Query: 1 MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 60
MKTYRQREKQG+KV +S+KGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSG QP
Sbjct: 99 MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 158
Query: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
+GTE+FVGKIPRDL+EDELVPLFEKAGPIWDLRLMMDPL+G NRGYAF+TFC KEAAQE
Sbjct: 159 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 218
Query: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQ 180
AVKL +++EIR GKH+GVCISVANNRLFVGSIPK+KTKE ILEEFSKVTEGL DVILYHQ
Sbjct: 219 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 278
Query: 181 PDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVK 240
PDDKKKNRGFCFLEYEDHK+AAQ VK
Sbjct: 279 PDDKKKNRGFCFLEYEDHKTAAQ-----------------------------------VK 303
Query: 241 VLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 300
VLFVRNLA TVTEEILEK+FS+FGKLERVKKLKDYAF+HF++R AVKAM+EMNGK++EG
Sbjct: 304 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 363
Query: 301 EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYP 360
E IEIV AKPPD+KRKER+A RQA+++ Y+DYYY+ PP MPPP RGRGR GGRGGYGYP
Sbjct: 364 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGR-GGRGGYGYP 422
Query: 361 PDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRG-GGRGGRGAPPPPRGRGA 419
PDYYGYEDYY DYYGYDYH+YRGGYEDPYYGY+D + V RG GGRG RGA P RGRGA
Sbjct: 423 PDYYGYEDYY-DYYGYDYHNYRGGYEDPYYGYED-FQVGARGRGGRGARGA-APSRGRGA 479
Query: 420 PPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGYNQ 479
PPRGRAGYSQRG P G RG RG RGG AQQQRGRG RG+RG RGGNVGGKRKADGYNQ
Sbjct: 480 APPRGRAGYSQRGGP-GSARGVRGARGG-AQQQRGRGVRGARGGRGGNVGGKRKADGYNQ 537
Query: 480 PDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK 532
PDSKRRQTNN QNWGSQPIAQQPL QGGD+SGNYGY ++NQEFYQDT+GQQWK
Sbjct: 538 PDSKRRQTNN-QNWGSQPIAQQPL-QGGDHSGNYGYKSENQEFYQDTFGQQWK 588
>gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 5 [Homo sapiens]
Length = 561
Score = 788 bits (2034), Expect = 0.0
Identities = 384/460 (83%), Positives = 419/460 (91%), Gaps = 7/460 (1%)
Query: 1 MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 60
MKTYRQREKQG+KV +S+KGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSG QP
Sbjct: 99 MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 158
Query: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
+GTE+FVGKIPRDL+EDELVPLFEKAGPIWDLRLMMDPL+G NRGYAF+TFC KEAAQE
Sbjct: 159 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 218
Query: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQ 180
AVKL +++EIR GKH+GVCISVANNRLFVGSIPK+KTKE ILEEFSKVTEGL DVILYHQ
Sbjct: 219 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 278
Query: 181 PDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVK 240
PDDKKKNRGFCFLEYEDHK+AAQARRRLMSGKVKVWGNV TVEWADP+E+PDPEVMAKVK
Sbjct: 279 PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK 338
Query: 241 VLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 300
VLFVRNLA TVTEEILEK+FS+FGKLERVKKLKDYAF+HF++R AVKAM+EMNGK++EG
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 398
Query: 301 EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYP 360
E IEIV AKPPD+KRKER+A RQA+++ Y+DYYY+ PP MPPP RGRGR GGRGGYGYP
Sbjct: 399 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGR-GGRGGYGYP 457
Query: 361 PDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRG-GGRGGRGAPPPPRGRGA 419
PDYYGYEDYY DYYGYDYH+YRGGYEDPYYGY+D + V RG GGRG RGA P RGRGA
Sbjct: 458 PDYYGYEDYY-DYYGYDYHNYRGGYEDPYYGYED-FQVGARGRGGRGARGA-APSRGRGA 514
Query: 420 PPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRG 459
PPRGRAGYSQRG P G RG RG RGG AQQQRGRG +G
Sbjct: 515 APPRGRAGYSQRGGP-GSARGVRGARGG-AQQQRGRGGKG 552
>gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 6 [Homo sapiens]
Length = 562
Score = 785 bits (2026), Expect = 0.0
Identities = 383/457 (83%), Positives = 417/457 (91%), Gaps = 7/457 (1%)
Query: 1 MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 60
MKTYRQREKQG+KV +S+KGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSG QP
Sbjct: 99 MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 158
Query: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
+GTE+FVGKIPRDL+EDELVPLFEKAGPIWDLRLMMDPL+G NRGYAF+TFC KEAAQE
Sbjct: 159 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 218
Query: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQ 180
AVKL +++EIR GKH+GVCISVANNRLFVGSIPK+KTKE ILEEFSKVTEGL DVILYHQ
Sbjct: 219 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 278
Query: 181 PDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVK 240
PDDKKKNRGFCFLEYEDHK+AAQARRRLMSGKVKVWGNV TVEWADP+E+PDPEVMAKVK
Sbjct: 279 PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK 338
Query: 241 VLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 300
VLFVRNLA TVTEEILEK+FS+FGKLERVKKLKDYAF+HF++R AVKAM+EMNGK++EG
Sbjct: 339 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 398
Query: 301 EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYP 360
E IEIV AKPPD+KRKER+A RQA+++ Y+DYYY+ PP MPPP RGRGR GGRGGYGYP
Sbjct: 399 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGR-GGRGGYGYP 457
Query: 361 PDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRG-GGRGGRGAPPPPRGRGA 419
PDYYGYEDYY DYYGYDYH+YRGGYEDPYYGY+D + V RG GGRG RGA P RGRGA
Sbjct: 458 PDYYGYEDYY-DYYGYDYHNYRGGYEDPYYGYED-FQVGARGRGGRGARGA-APSRGRGA 514
Query: 420 PPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRG 456
PPRGRAGYSQRG P G RG RG RGG AQQQRGRG
Sbjct: 515 APPRGRAGYSQRGGP-GSARGVRGARGG-AQQQRGRG 549
>gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 2 [Homo sapiens]
Length = 464
Score = 785 bits (2026), Expect = 0.0
Identities = 383/457 (83%), Positives = 417/457 (91%), Gaps = 7/457 (1%)
Query: 1 MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 60
MKTYRQREKQG+KV +S+KGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSG QP
Sbjct: 1 MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 60
Query: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
+GTE+FVGKIPRDL+EDELVPLFEKAGPIWDLRLMMDPL+G NRGYAF+TFC KEAAQE
Sbjct: 61 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 120
Query: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQ 180
AVKL +++EIR GKH+GVCISVANNRLFVGSIPK+KTKE ILEEFSKVTEGL DVILYHQ
Sbjct: 121 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 180
Query: 181 PDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVK 240
PDDKKKNRGFCFLEYEDHK+AAQARRRLMSGKVKVWGNV TVEWADP+E+PDPEVMAKVK
Sbjct: 181 PDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVK 240
Query: 241 VLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 300
VLFVRNLA TVTEEILEK+FS+FGKLERVKKLKDYAF+HF++R AVKAM+EMNGK++EG
Sbjct: 241 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 300
Query: 301 EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYP 360
E IEIV AKPPD+KRKER+A RQA+++ Y+DYYY+ PP MPPP RGRGR GGRGGYGYP
Sbjct: 301 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGR-GGRGGYGYP 359
Query: 361 PDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRG-GGRGGRGAPPPPRGRGA 419
PDYYGYEDYY DYYGYDYH+YRGGYEDPYYGY+D + V RG GGRG RGA P RGRGA
Sbjct: 360 PDYYGYEDYY-DYYGYDYHNYRGGYEDPYYGYED-FQVGARGRGGRGARGA-APSRGRGA 416
Query: 420 PPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRG 456
PPRGRAGYSQRG P G RG RG RGG AQQQRGRG
Sbjct: 417 APPRGRAGYSQRGGP-GSARGVRGARGG-AQQQRGRG 451
>gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 3 [Homo sapiens]
Length = 527
Score = 699 bits (1805), Expect = 0.0
Identities = 351/457 (76%), Positives = 383/457 (83%), Gaps = 42/457 (9%)
Query: 1 MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQP 60
MKTYRQREKQG+KV +S+KGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSG QP
Sbjct: 99 MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQP 158
Query: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
+GTE+FVGKIPRDL+EDELVPLFEKAGPIWDLRLMMDPL+G NRGYAF+TFC KEAAQE
Sbjct: 159 SVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQE 218
Query: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQ 180
AVKL +++EIR GKH+GVCISVANNRLFVGSIPK+KTKE ILEEFSKVTEGL DVILYHQ
Sbjct: 219 AVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQ 278
Query: 181 PDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVK 240
PDDKKKNRGFCFLEYEDHK+AAQ VK
Sbjct: 279 PDDKKKNRGFCFLEYEDHKTAAQ-----------------------------------VK 303
Query: 241 VLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEG 300
VLFVRNLA TVTEEILEK+FS+FGKLERVKKLKDYAF+HF++R AVKAM+EMNGK++EG
Sbjct: 304 VLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEG 363
Query: 301 EEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYP 360
E IEIV AKPPD+KRKER+A RQA+++ Y+DYYY+ PP MPPP RGRGR GGRGGYGYP
Sbjct: 364 ENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGR-GGRGGYGYP 422
Query: 361 PDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRG-GGRGGRGAPPPPRGRGA 419
PDYYGYEDYY DYYGYDYH+YRGGYEDPYYGY+D + V RG GGRG RGA P RGRGA
Sbjct: 423 PDYYGYEDYY-DYYGYDYHNYRGGYEDPYYGYED-FQVGARGRGGRGARGA-APSRGRGA 479
Query: 420 PPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRG 456
PPRGRAGYSQRG P G RG RG RGG AQQQRGRG
Sbjct: 480 APPRGRAGYSQRGGP-GSARGVRGARGG-AQQQRGRG 514
>gi|148833513 RNA binding motif protein 47 isoform a [Homo sapiens]
Length = 593
Score = 371 bits (952), Expect = e-102
Identities = 209/455 (45%), Positives = 276/455 (60%), Gaps = 56/455 (12%)
Query: 12 SKVQESTKG-PDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQPGIGTEVFVGK 70
+KV E G P+EA + AL+ERTGY++ GQRKYGGPPP + G P G EVFVGK
Sbjct: 20 AKVPEGVAGAPNEAALLALMERTGYSMVQENGQRKYGGPPPG--WEGPHPQRGCEVFVGK 77
Query: 71 IPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEI 130
IPRD+YEDELVP+FE G I++LRLMMD G+NRGYAF+ +C K A+ AV+ ++YEI
Sbjct: 78 IPRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRELNNYEI 136
Query: 131 RPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGF 190
RPG+ LGVC SV N RLF+G IPK K +E ILEE +KVTEG++DVI+Y DK KNRGF
Sbjct: 137 RPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGF 196
Query: 191 CFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATT 250
F+EYE H++AA ARR+LM G++++WG+ + V+WA+P + D +VM VK+L+VRNL
Sbjct: 197 AFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIE 256
Query: 251 VTEEILEKSFSEF--GKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLA 308
TE+ ++KSF +F G +ERVKK++DYAFVHF R AV AM+ +NG E+EG +E+ LA
Sbjct: 257 TTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLA 316
Query: 309 KPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDY-YGYE 367
KP DK++ R + RGGG P Y Y +
Sbjct: 317 KPVDKEQYSRY--------------------------QKAARGGGAAEAAQQPSYVYSCD 350
Query: 368 DYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGRAG 427
Y YYGY Y+ G D + ++RGRG G G AP P
Sbjct: 351 PYTLAYYGYPYNALIGPNRDYFV---KAGSIRGRGRGAAGNRAPGP-------------- 393
Query: 428 YSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRG 462
RG+ LG G GRG ++ G+G + +G
Sbjct: 394 ---RGSYLG---GYSAGRGIYSRYHEGKGKQQEKG 422
>gi|148833511 RNA binding motif protein 47 isoform b [Homo sapiens]
Length = 524
Score = 355 bits (910), Expect = 7e-98
Identities = 189/380 (49%), Positives = 247/380 (65%), Gaps = 33/380 (8%)
Query: 12 SKVQESTKG-PDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQPGIGTEVFVGK 70
+KV E G P+EA + AL+ERTGY++ GQRKYGGPPP + G P G EVFVGK
Sbjct: 20 AKVPEGVAGAPNEAALLALMERTGYSMVQENGQRKYGGPPPG--WEGPHPQRGCEVFVGK 77
Query: 71 IPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEI 130
IPRD+YEDELVP+FE G I++LRLMMD G+NRGYAF+ +C K A+ AV+ ++YEI
Sbjct: 78 IPRDVYEDELVPVFEAVGRIYELRLMMD-FDGKNRGYAFVMYCHKHEAKRAVRELNNYEI 136
Query: 131 RPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGF 190
RPG+ LGVC SV N RLF+G IPK K +E ILEE +KVTEG++DVI+Y DK KNRGF
Sbjct: 137 RPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGF 196
Query: 191 CFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATT 250
F+EYE H++AA ARR+LM G++++WG+ + V+WA+P + D +VM VK+L+VRNL
Sbjct: 197 AFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIE 256
Query: 251 VTEEILEKSFSEF--GKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLA 308
TE+ ++KSF +F G +ERVKK++DYAFVHF R AV AM+ +NG E+EG +E+ LA
Sbjct: 257 TTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLA 316
Query: 309 KPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDY-YGYE 367
KP DK++ R + RGGG P Y Y +
Sbjct: 317 KPVDKEQYSRY--------------------------QKAARGGGAAEAAQQPSYVYSCD 350
Query: 368 DYYDDYYGYDYHDYRGGYED 387
Y YYGY Y+ G D
Sbjct: 351 PYTLAYYGYPYNALIGPNRD 370
>gi|21450675 RNA binding motif protein 46 [Homo sapiens]
Length = 533
Score = 345 bits (884), Expect = 8e-95
Identities = 171/300 (57%), Positives = 225/300 (75%), Gaps = 5/300 (1%)
Query: 22 DEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELV 81
+EA + AL+E+TGY + GQRK+GGPPP + G P G EVFVGKIPRD+YEDELV
Sbjct: 21 NEAALLALMEKTGYNMVQENGQRKFGGPPPG--WEGPPPPRGCEVFVGKIPRDMYEDELV 78
Query: 82 PLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCIS 141
P+FE+AG I++ RLMM+ SG+NRGYAF+ + KE AQ A+++ ++YEIRPGK +GVC+S
Sbjct: 79 PVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVS 137
Query: 142 VANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSA 201
+ N RLF+G+IPK K KE IL+E KVTEG+VDVI+Y DK KNRGF F+EYE H++A
Sbjct: 138 LDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAA 197
Query: 202 AQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFS 261
A ARR+L+ G ++WG+ + V+WADP +E D E M +VKVL+VRNL + TEE ++ F+
Sbjct: 198 AMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFN 257
Query: 262 EF--GKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQ 319
+F G +ERVKKL+DYAFVHF +R AV AM MNGK I+G IE+ LAKP +K+ RQ
Sbjct: 258 KFKPGAVERVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENTWRQ 317
>gi|20357575 apobec-1 complementation factor isoform 2 [Homo
sapiens]
Length = 594
Score = 335 bits (859), Expect = 6e-92
Identities = 165/314 (52%), Positives = 222/314 (70%), Gaps = 5/314 (1%)
Query: 23 EAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVP 82
EA ++AL++RTGY+L GQRKYGGPPP + P G E+F+GK+PRDL+EDEL+P
Sbjct: 17 EAALRALVQRTGYSLVQENGQRKYGGPPPG--WDAAPPERGCEIFIGKLPRDLFEDELIP 74
Query: 83 LFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISV 142
L EK G I+++R+MMD +G NRGYAF+TF K A+ A+K ++YEIR G+ LGVC SV
Sbjct: 75 LCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASV 133
Query: 143 ANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAA 202
N RLFVG IPK K +E IL E KVTEG+VDVI+Y DK KNRGF F+EYE H++AA
Sbjct: 134 DNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAA 193
Query: 203 QARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSE 262
ARR+L+ G++++WG+ + V+WA+P E D + M+ VK+L+VRNL + +EE++EK F+
Sbjct: 194 MARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN 253
Query: 263 F--GKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQA 320
G +ERVKK++DYAFVHF +R AV+AM +NGK ++G IE+ LAKP DK R
Sbjct: 254 IKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYT 313
Query: 321 ARQASRSTAYEDYY 334
R T + Y
Sbjct: 314 RGTGGRGTMLQGEY 327
>gi|20357572 apobec-1 complementation factor isoform 1 [Homo
sapiens]
Length = 586
Score = 335 bits (859), Expect = 6e-92
Identities = 165/314 (52%), Positives = 222/314 (70%), Gaps = 5/314 (1%)
Query: 23 EAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVP 82
EA ++AL++RTGY+L GQRKYGGPPP + P G E+F+GK+PRDL+EDEL+P
Sbjct: 17 EAALRALVQRTGYSLVQENGQRKYGGPPPG--WDAAPPERGCEIFIGKLPRDLFEDELIP 74
Query: 83 LFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISV 142
L EK G I+++R+MMD +G NRGYAF+TF K A+ A+K ++YEIR G+ LGVC SV
Sbjct: 75 LCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASV 133
Query: 143 ANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAA 202
N RLFVG IPK K +E IL E KVTEG+VDVI+Y DK KNRGF F+EYE H++AA
Sbjct: 134 DNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAA 193
Query: 203 QARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSE 262
ARR+L+ G++++WG+ + V+WA+P E D + M+ VK+L+VRNL + +EE++EK F+
Sbjct: 194 MARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNN 253
Query: 263 F--GKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQA 320
G +ERVKK++DYAFVHF +R AV+AM +NGK ++G IE+ LAKP DK R
Sbjct: 254 IKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYT 313
Query: 321 ARQASRSTAYEDYY 334
R T + Y
Sbjct: 314 RGTGGRGTMLQGEY 327
>gi|20357578 apobec-1 complementation factor isoform 3 [Homo
sapiens]
Length = 594
Score = 319 bits (817), Expect = 5e-87
Identities = 157/300 (52%), Positives = 210/300 (70%), Gaps = 5/300 (1%)
Query: 37 LDVTTGQRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLM 96
L+ GQRKYGGPPP + P G E+F+GK+PRDL+EDEL+PL EK G I+++R+M
Sbjct: 39 LEKENGQRKYGGPPPG--WDAAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMM 96
Query: 97 MDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNK 156
MD +G NRGYAF+TF K A+ A+K ++YEIR G+ LGVC SV N RLFVG IPK K
Sbjct: 97 MD-FNGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTK 155
Query: 157 TKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVW 216
+E IL E KVTEG+VDVI+Y DK KNRGF F+EYE H++AA ARR+L+ G++++W
Sbjct: 156 KREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLW 215
Query: 217 GNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEF--GKLERVKKLKD 274
G+ + V+WA+P E D + M+ VK+L+VRNL + +EE++EK F+ G +ERVKK++D
Sbjct: 216 GHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD 275
Query: 275 YAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYY 334
YAFVHF +R AV+AM +NGK ++G IE+ LAKP DK R R T + Y
Sbjct: 276 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDKDSYVRYTRGTGGRGTMLQGEY 335
>gi|34740339 dead end homolog 1 [Homo sapiens]
Length = 353
Score = 136 bits (343), Expect = 4e-32
Identities = 75/212 (35%), Positives = 115/212 (54%), Gaps = 5/212 (2%)
Query: 16 ESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDL 75
E ++A ++A + TG L GQRKYGGPPP V G P G+EVF+G++P+D+
Sbjct: 12 ERVNPENKAALEAWVRETGIRLVQVNGQRKYGGPPPGWV--GSPPPAGSEVFIGRLPQDV 69
Query: 76 YEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKH 135
YE +L+PLF++ G +++ RLMM SG NRG+A+ + + AQ A+ ++ +RP
Sbjct: 70 YEHQLIPLFQRVGRLYEFRLMM-TFSGLNRGFAYARYSSRRGAQAAIATLHNHPLRPSCP 128
Query: 136 LGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEY 195
L VC S L V +P N T+ +L + GL + L P L++
Sbjct: 129 LLVCRSTEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPAPGQ--IALLKF 186
Query: 196 EDHKSAAQARRRLMSGKVKVWGNVVTVEWADP 227
H++AA A++ L+ G+ + G V VEW P
Sbjct: 187 SSHRAAAMAKKALVEGQSHLCGEQVAVEWLKP 218
>gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo
sapiens]
Length = 370
Score = 89.7 bits (221), Expect = 6e-18
Identities = 72/273 (26%), Positives = 140/273 (51%), Gaps = 29/273 (10%)
Query: 66 VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLC 125
++VG + D+ ED L F GP+ +R+ D ++ ++ GYA++ F AQ+A+
Sbjct: 12 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 126 DSYEIRPGKHLGVCISVAN--------NRLFVGSIPKNKTKENILEEFSKVTEGLVDVIL 177
+ ++I GK + + S + +F+ ++ K+ + + E FS + L ++
Sbjct: 72 N-FDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVM 130
Query: 178 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA 237
D + ++G+ F+ +++ +A +A M+GK+ + G V V ++ + E+ +
Sbjct: 131 ----SDDQGSKGYAFVHFQNQSAADRAIEE-MNGKL-LKGCKVFVGRFKNRKDREAELRS 184
Query: 238 KVKV---LFVRNLATTVTEEILEKSFSEFGKLERVK-------KLKDYAFVHFEDRGAAV 287
K ++++N + +E L+ FS++GK VK K K + FV F+ AA
Sbjct: 185 KASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAK 244
Query: 288 KAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQA 320
KA++EMNG++I G+ I + A +K+ ERQA
Sbjct: 245 KAVEEMNGRDINGQLIFVGRA----QKKVERQA 273
Score = 74.3 bits (181), Expect = 3e-13
Identities = 78/290 (26%), Positives = 123/290 (42%), Gaps = 58/290 (20%)
Query: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
GIG VF+ + + + L F G I ++M D ++GYAF+ F + AA
Sbjct: 96 GIGN-VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADR 152
Query: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILE----EFSKV-------- 168
A+ E GK L C ++FVG K +E L EF+ V
Sbjct: 153 AI------EEMNGKLLKGC------KVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGD 200
Query: 169 --TEGLVDVILYH--------QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN 218
E L DV + D K++GF F+ ++ H++A +A M+G+ + G
Sbjct: 201 MDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEE-MNGR-DINGQ 258
Query: 219 VVTVEWADPVEEPDPEVMAKVKVL-------------FVRNLATTVTEEILEKSFSEFGK 265
++ V A E E+ + L +++NL T+ +E L FS FG
Sbjct: 259 LIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGS 318
Query: 266 LERVKKL------KDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAK 309
+ RVK + K + + F A KAM EMNG+ + + + I LA+
Sbjct: 319 ISRVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 368
>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
sapiens]
Length = 631
Score = 86.7 bits (213), Expect = 5e-17
Identities = 72/273 (26%), Positives = 139/273 (50%), Gaps = 29/273 (10%)
Query: 66 VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLC 125
++VG + D+ E L F AGP+ +R+ D ++ ++ GYA++ F A+ A+
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 126 DSYEIRPGKHLGVCISVAN--------NRLFVGSIPKNKTKENILEEFSKVTEGLVDVIL 177
++++ GK + + S + +F+ ++ K+ + + + FS +++
Sbjct: 73 -NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS----AFGNILS 127
Query: 178 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA 237
D+ ++G+ F+ +E ++A +A + M+G + + V V +E + E+ A
Sbjct: 128 CKVVCDENGSKGYAFVHFETQEAADKAIEK-MNGML-LNDRKVFVGRFKSRKEREAELGA 185
Query: 238 KVKV---LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD-------YAFVHFEDRGAAV 287
K K ++++N V +E L++ FS+FGK VK ++D + FV +E A
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDAN 245
Query: 288 KAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQA 320
KA++EMNGKEI G+ I + A +K+ ERQA
Sbjct: 246 KAVEEMNGKEISGKIIFVGRA----QKKVERQA 274
Score = 78.2 bits (191), Expect = 2e-14
Identities = 74/293 (25%), Positives = 133/293 (45%), Gaps = 46/293 (15%)
Query: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
G+G VF+ + + + L F G I +++ D ++GYAF+ F +EAA +
Sbjct: 97 GVGN-VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADK 153
Query: 121 AVKLCDSYEIRPGK--------------HLGVCISVANNRLFVGSIPKNKTKENILEEFS 166
A++ + + K LG N +++ + + E++ E FS
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-VYIKNFGEEVDDESLKELFS 212
Query: 167 KVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWAD 226
+ + L ++ D K++GF F+ YE H+ A +A M+GK ++ G ++ V A
Sbjct: 213 QFGKTLSVKVMR---DPNGKSKGFGFVSYEKHEDANKAVEE-MNGK-EISGKIIFVGRAQ 267
Query: 227 PVEEPDPEVMAKVKVL-------------FVRNLATTVTEEILEKSFSEFGKLERVK--- 270
E E+ K + L +++NL T+ +E L K FS FG + K
Sbjct: 268 KKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML 327
Query: 271 ---KLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQA 320
+ K + FV F A KA+ EMNG+ + + + + LA ++++ER+A
Sbjct: 328 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA----QRKEERKA 376
>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
sapiens]
Length = 644
Score = 86.7 bits (213), Expect = 5e-17
Identities = 72/273 (26%), Positives = 139/273 (50%), Gaps = 29/273 (10%)
Query: 66 VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLC 125
++VG + D+ E L F AGP+ +R+ D ++ ++ GYA++ F A+ A+
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 126 DSYEIRPGKHLGVCISVAN--------NRLFVGSIPKNKTKENILEEFSKVTEGLVDVIL 177
++++ GK + + S + +F+ ++ K+ + + + FS +++
Sbjct: 73 -NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS----AFGNILS 127
Query: 178 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA 237
D+ ++G+ F+ +E ++A +A + M+G + + V V +E + E+ A
Sbjct: 128 CKVVCDENGSKGYAFVHFETQEAADKAIEK-MNGML-LNDRKVFVGRFKSRKEREAELGA 185
Query: 238 KVKV---LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD-------YAFVHFEDRGAAV 287
K K ++++N V +E L++ FS+FGK VK ++D + FV +E A
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDAN 245
Query: 288 KAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQA 320
KA++EMNGKEI G+ I + A +K+ ERQA
Sbjct: 246 KAVEEMNGKEISGKIIFVGRA----QKKVERQA 274
Score = 78.2 bits (191), Expect = 2e-14
Identities = 74/293 (25%), Positives = 133/293 (45%), Gaps = 46/293 (15%)
Query: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
G+G VF+ + + + L F G I +++ D ++GYAF+ F +EAA +
Sbjct: 97 GVGN-VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADK 153
Query: 121 AVKLCDSYEIRPGK--------------HLGVCISVANNRLFVGSIPKNKTKENILEEFS 166
A++ + + K LG N +++ + + E++ E FS
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-VYIKNFGEEVDDESLKELFS 212
Query: 167 KVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWAD 226
+ + L ++ D K++GF F+ YE H+ A +A M+GK ++ G ++ V A
Sbjct: 213 QFGKTLSVKVMR---DPNGKSKGFGFVSYEKHEDANKAVEE-MNGK-EISGKIIFVGRAQ 267
Query: 227 PVEEPDPEVMAKVKVL-------------FVRNLATTVTEEILEKSFSEFGKLERVK--- 270
E E+ K + L +++NL T+ +E L K FS FG + K
Sbjct: 268 KKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML 327
Query: 271 ---KLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQA 320
+ K + FV F A KA+ EMNG+ + + + + LA ++++ER+A
Sbjct: 328 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA----QRKEERKA 376
>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
sapiens]
Length = 660
Score = 86.7 bits (213), Expect = 5e-17
Identities = 72/273 (26%), Positives = 139/273 (50%), Gaps = 29/273 (10%)
Query: 66 VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLC 125
++VG + D+ E L F AGP+ +R+ D ++ ++ GYA++ F A+ A+
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 126 DSYEIRPGKHLGVCISVAN--------NRLFVGSIPKNKTKENILEEFSKVTEGLVDVIL 177
++++ GK + + S + +F+ ++ K+ + + + FS +++
Sbjct: 73 -NFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS----AFGNILS 127
Query: 178 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA 237
D+ ++G+ F+ +E ++A +A + M+G + + V V +E + E+ A
Sbjct: 128 CKVVCDENGSKGYAFVHFETQEAADKAIEK-MNGML-LNDRKVFVGRFKSRKEREAELGA 185
Query: 238 KVKV---LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD-------YAFVHFEDRGAAV 287
K K ++++N V +E L++ FS+FGK VK ++D + FV +E A
Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDAN 245
Query: 288 KAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQA 320
KA++EMNGKEI G+ I + A +K+ ERQA
Sbjct: 246 KAVEEMNGKEISGKIIFVGRA----QKKVERQA 274
Score = 78.2 bits (191), Expect = 2e-14
Identities = 74/293 (25%), Positives = 133/293 (45%), Gaps = 46/293 (15%)
Query: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
G+G VF+ + + + L F G I +++ D ++GYAF+ F +EAA +
Sbjct: 97 GVGN-VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADK 153
Query: 121 AVKLCDSYEIRPGK--------------HLGVCISVANNRLFVGSIPKNKTKENILEEFS 166
A++ + + K LG N +++ + + E++ E FS
Sbjct: 154 AIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTN-VYIKNFGEEVDDESLKELFS 212
Query: 167 KVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWAD 226
+ + L ++ D K++GF F+ YE H+ A +A M+GK ++ G ++ V A
Sbjct: 213 QFGKTLSVKVMR---DPNGKSKGFGFVSYEKHEDANKAVEE-MNGK-EISGKIIFVGRAQ 267
Query: 227 PVEEPDPEVMAKVKVL-------------FVRNLATTVTEEILEKSFSEFGKLERVK--- 270
E E+ K + L +++NL T+ +E L K FS FG + K
Sbjct: 268 KKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML 327
Query: 271 ---KLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQA 320
+ K + FV F A KA+ EMNG+ + + + + LA ++++ER+A
Sbjct: 328 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA----QRKEERKA 376
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 86.7 bits (213), Expect = 5e-17
Identities = 82/255 (32%), Positives = 104/255 (40%), Gaps = 59/255 (23%)
Query: 242 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 293
LF+ L T E+ LE F ++G++ V +KD +AFV FE A A +M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 294 NGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRG-RGRGG 352
NGK ++G+ I++ A P + R PPPR P RG RG G
Sbjct: 70 NGKSLDGKAIKVEQATKPSFESGRRGPP---------------PPPRSRGPPRGLRGGRG 114
Query: 353 GRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPP 412
G GG PP RGG+ D D GY++ RG P
Sbjct: 115 GSGGTRGPPS-------------------RGGHMD-----DGGYSMNFNMS--SSRGPLP 148
Query: 413 PPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNR-----GGN 467
RG PPPR +R AP GP R S G GG A RGR S G R +
Sbjct: 149 VKRG---PPPRSGGPPPKRSAPSGPVRSS-SGMGGRAPVSRGRDSYGGPPRREPLPSRRD 204
Query: 468 VGGKRKADGYNQPDS 482
V + DGY+ DS
Sbjct: 205 VYLSPRDDGYSTKDS 219
Score = 58.2 bits (139), Expect = 2e-08
Identities = 48/134 (35%), Positives = 54/134 (40%), Gaps = 17/134 (12%)
Query: 316 KERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYG 375
++R + S + + Y + R PP RG PP YG YDDY
Sbjct: 268 RDRDYSDHPSGGSYRDSYESYGNSRSAPPTRG------------PPPSYGGSSRYDDYSS 315
Query: 376 YDYHDYRGGYEDPYYGYDDGYAVRGRGG-GRGGRGAPPPPRGRGAPPPRGRAGYSQRGAP 434
D GG D Y GR GR RG PP RG PPPR S RGAP
Sbjct: 316 S--RDGYGGSRDSYSSSRSDLYSSGRDRVGRQERGLPPSME-RGYPPPRDSYSSSSRGAP 372
Query: 435 LGPPR-GSRGGRGG 447
G R GSR RGG
Sbjct: 373 RGGGRGGSRSDRGG 386
Score = 37.7 bits (86), Expect = 0.026
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 65 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVK 123
++F+G + + E L +F K G I ++ LM D + ++RG+AF+TF A++A +
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67
Score = 32.3 bits (72), Expect = 1.1
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 146 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 205
+LF+G + +T E LE +V+V+L + + K+RGF F+ +E A A
Sbjct: 9 KLFIGGL-NTETNEKALEAVFGKYGRIVEVLLM-KDRETNKSRGFAFVTFESPADAKDAA 66
Query: 206 RRLMSGKVKVWGNVVTVEWA 225
R M+GK + G + VE A
Sbjct: 67 RD-MNGK-SLDGKAIKVEQA 84
>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 85.9 bits (211), Expect = 8e-17
Identities = 88/304 (28%), Positives = 123/304 (40%), Gaps = 65/304 (21%)
Query: 242 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 293
LF+ L T E+ LE F ++G++ V +KD +AFV FE A A +M
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 294 NGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRG-G 352
NGK ++G+ I++ A P +R PPPR P RG G G G
Sbjct: 70 NGKSLDGKAIKVEQATKPSFERGRHGPP---------------PPPRSRGPPRGFGAGRG 114
Query: 353 GRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPP 412
G GG PP RGG+ D D GY++ RG P
Sbjct: 115 GSGGTRGPPS-------------------RGGHMD-----DGGYSMNFNMS--SSRGPLP 148
Query: 413 PPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNR-----GGN 467
RG PPPR +R AP G R S G GG A RGR S G R +
Sbjct: 149 VKRG---PPPRSGGPSPKRSAPSGLVRSS-SGMGGRAPLSRGRDSYGGPPRREPLPSRRD 204
Query: 468 VGGKRKADGYNQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYS-GNYGYNNDNQEFYQDT 526
V + DGY+ DS + +++ S + DY+ +YG+++ ++
Sbjct: 205 VYLSPRDDGYSTKDS-----YSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRG 259
Query: 527 YGQQ 530
YG +
Sbjct: 260 YGDR 263
Score = 42.7 bits (99), Expect = 8e-04
Identities = 51/159 (32%), Positives = 56/159 (35%), Gaps = 30/159 (18%)
Query: 326 RSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYY------GYEDYYDDYYGYDYH 379
R Y DY H R P RG G R GYG DY Y D Y+ Y
Sbjct: 239 RDYTYRDYG-HSSSRDDYPSRGYG---DRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSA 294
Query: 380 DYRGGYEDPYYG---YDDGYAVR-GRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPL 435
G Y G YDD + R G GG R + R G +RG P
Sbjct: 295 PLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCD----RVGRQERGLPP 350
Query: 436 GPPRG--------SRGGRGGPAQQQRGRGSRGSRGNRGG 466
RG S RG P RG G GSR +RGG
Sbjct: 351 SVERGYPSSRDSYSSSSRGAP----RGAGPGGSRSDRGG 385
Score = 36.2 bits (82), Expect = 0.077
Identities = 18/59 (30%), Positives = 35/59 (59%)
Query: 65 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVK 123
++F+G + + E L +F K G I ++ L+ D + ++RG+AF+TF A++A +
Sbjct: 9 KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67
Score = 32.3 bits (72), Expect = 1.1
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 146 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 205
+LF+G + +T E LE +V+V+L + + K+RGF F+ +E A A
Sbjct: 9 KLFIGGL-NTETNEKALETVFGKYGRIVEVLLI-KDRETNKSRGFAFVTFESPADAKDAA 66
Query: 206 RRLMSGKVKVWGNVVTVEWA 225
R M+GK + G + VE A
Sbjct: 67 RD-MNGK-SLDGKAIKVEQA 84
>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 85.9 bits (211), Expect = 8e-17
Identities = 88/304 (28%), Positives = 123/304 (40%), Gaps = 65/304 (21%)
Query: 242 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 293
LF+ L T E+ LE F ++G++ V +KD +AFV FE A A +M
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 294 NGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRG-G 352
NGK ++G+ I++ A P +R PPPR P RG G G G
Sbjct: 70 NGKSLDGKAIKVEQATKPSFERGRHGPP---------------PPPRSRGPPRGFGAGRG 114
Query: 353 GRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPP 412
G GG PP RGG+ D D GY++ RG P
Sbjct: 115 GSGGTRGPPS-------------------RGGHMD-----DGGYSMNFNMS--SSRGPLP 148
Query: 413 PPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNR-----GGN 467
RG PPPR +R AP G R S G GG A RGR S G R +
Sbjct: 149 VKRG---PPPRSGGPSPKRSAPSGLVRSS-SGMGGRAPLSRGRDSYGGPPRREPLPSRRD 204
Query: 468 VGGKRKADGYNQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYS-GNYGYNNDNQEFYQDT 526
V + DGY+ DS + +++ S + DY+ +YG+++ ++
Sbjct: 205 VYLSPRDDGYSTKDS-----YSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRG 259
Query: 527 YGQQ 530
YG +
Sbjct: 260 YGDR 263
Score = 42.7 bits (99), Expect = 8e-04
Identities = 51/159 (32%), Positives = 56/159 (35%), Gaps = 30/159 (18%)
Query: 326 RSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYY------GYEDYYDDYYGYDYH 379
R Y DY H R P RG G R GYG DY Y D Y+ Y
Sbjct: 239 RDYTYRDYG-HSSSRDDYPSRGYG---DRDGYGRDRDYSDHPSGGSYRDSYESYGNSRSA 294
Query: 380 DYRGGYEDPYYG---YDDGYAVR-GRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPL 435
G Y G YDD + R G GG R + R G +RG P
Sbjct: 295 PLTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSCD----RVGRQERGLPP 350
Query: 436 GPPRG--------SRGGRGGPAQQQRGRGSRGSRGNRGG 466
RG S RG P RG G GSR +RGG
Sbjct: 351 SVERGYPSSRDSYSSSSRGAP----RGAGPGGSRSDRGG 385
Score = 36.2 bits (82), Expect = 0.077
Identities = 18/59 (30%), Positives = 35/59 (59%)
Query: 65 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVK 123
++F+G + + E L +F K G I ++ L+ D + ++RG+AF+TF A++A +
Sbjct: 9 KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67
Score = 32.3 bits (72), Expect = 1.1
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 146 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 205
+LF+G + +T E LE +V+V+L + + K+RGF F+ +E A A
Sbjct: 9 KLFIGGL-NTETNEKALETVFGKYGRIVEVLLI-KDRETNKSRGFAFVTFESPADAKDAA 66
Query: 206 RRLMSGKVKVWGNVVTVEWA 225
R M+GK + G + VE A
Sbjct: 67 RD-MNGK-SLDGKAIKVEQA 84
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 85.5 bits (210), Expect = 1e-16
Identities = 101/385 (26%), Positives = 142/385 (36%), Gaps = 71/385 (18%)
Query: 146 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEY---EDHKSAA 202
+LF+G + T +++ E F K L D ++ P K+ +RGF F+ Y E+ +A
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGT-LTDCVVMRDPQTKR-SRGFGFVTYSCVEEVDAAM 93
Query: 203 QARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSE 262
AR + G+V V+ E + P VK +FV + E L F +
Sbjct: 94 CARPHKVDGRVVEPKRAVSRE-----DSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEK 148
Query: 263 FGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKK 314
+GK+E ++ ++D +AFV F+D K + + I G E+ K K
Sbjct: 149 YGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKY-HTINGHNCEV---KKALSK 204
Query: 315 RKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYY 374
++ + A Q R ++ RG GGG G +G ++ G Y
Sbjct: 205 QEMQSAGSQRGRGGGSGNFMG----------RGGNFGGGGGNFGRGGNFGGRGGYGGG-- 252
Query: 375 GYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAP 434
GG Y G D GY G GG G G G P R GY
Sbjct: 253 -------GGGSRGSYGGGDGGY--NGFGGDGGNYG--------GGPGYSSRGGY------ 289
Query: 435 LGPPRGSRGGRGGPAQQQRGRGSRGSRG----NRGGNVGGKRKADGYNQPDSKRRQTNNQ 490
G GGP +G G G G N GGN GG G N D Q
Sbjct: 290 ---------GGGGPGYGNQGGGYGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQ 340
Query: 491 QNWGSQPIAQ-QPLQQGGDYSGNYG 514
N+G G Y G YG
Sbjct: 341 SNYGPMKGGSFGGRSSGSPYGGGYG 365
Score = 60.8 bits (146), Expect = 3e-09
Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 28/152 (18%)
Query: 65 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITF-CGKEA------ 117
++F+G + + +D L FEK G + D +M DP + ++RG+ F+T+ C +E
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95
Query: 118 -----------AQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFS 166
+ AV DS ++PG HL V ++FVG I ++ + N+ + F
Sbjct: 96 RPHKVDGRVVEPKRAVSREDS--VKPGAHLTV------KKIFVGGIKEDTEEYNLRDYFE 147
Query: 167 KVTEGLVDVILYHQPDDKKKNRGFCFLEYEDH 198
K G ++ I + K RGF F+ ++DH
Sbjct: 148 KY--GKIETIEVMEDRQSGKKRGFAFVTFDDH 177
Score = 44.7 bits (104), Expect = 2e-04
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 52 DSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFIT 111
DSV G + ++FVG I D E L FEK G I + +M D SG+ RG+AF+T
Sbjct: 115 DSVKPGAHLTV-KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVT 173
Query: 112 FCGKEAAQEAV 122
F + + V
Sbjct: 174 FDDHDTVDKIV 184
>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 85.1 bits (209), Expect = 1e-16
Identities = 74/268 (27%), Positives = 135/268 (50%), Gaps = 21/268 (7%)
Query: 66 VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLC 125
++VG + D+ E L F AGPI +R+ D ++ + YA++ F + A+ A+
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 126 DSYEIRPGKHLGVCISVANNRLF---VGSI-PKNKTKENILEEFSKVTEGLVDVILYHQP 181
+ +++ GK + + S + L VG+I KN K + +++ +
Sbjct: 73 N-FDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVV 131
Query: 182 DDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKV 241
D+ ++G+ F+ +E H++A +A ++ M+G + + G V V +E + E+ A+ K
Sbjct: 132 CDENGSKGYGFVHFETHEAAERAIKK-MNGML-LNGRKVFVGQFKSRKEREAELGARAKE 189
Query: 242 ---LFVRNLATTVTEEILEKSFSEFGKLERVK-------KLKDYAFVHFEDRGAAVKAMD 291
++++N + +E L+ F +FG VK K K + FV FE A KA+D
Sbjct: 190 FPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 292 EMNGKEIEGEEIEIVLAKPPDKKRKERQ 319
EMNGKE+ G++I + A +K+ ERQ
Sbjct: 250 EMNGKELNGKQIYVGRA----QKKVERQ 273
Score = 68.6 bits (166), Expect = 1e-11
Identities = 79/301 (26%), Positives = 130/301 (43%), Gaps = 62/301 (20%)
Query: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
G+G +FV + + + L G I ++ D ++GY F+ F EAA+
Sbjct: 97 GVGN-IFVKNLDKSINNKALYDTVSAFGNILSCNVVCD--ENGSKGYGFVHFETHEAAER 153
Query: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENIL----EEFSKV-------- 168
A+K K G+ ++ ++FVG K +E L +EF V
Sbjct: 154 AIK----------KMNGMLLN--GRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGED 201
Query: 169 --TEGLVDVILYHQP--------DDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN 218
E L D+ P D+ K++GF F+ +E H+ A +A M+GK ++ G
Sbjct: 202 MDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE-MNGK-ELNGK 259
Query: 219 VVTVEWADPVEEPDPEVMA-------------KVKVLFVRNLATTVTEEILEKSFSEFGK 265
+ V A E E+ +V L+V+NL + +E L K+FS FG
Sbjct: 260 QIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGT 319
Query: 266 LERVK------KLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQ 319
+ K + K + FV F A KA+ EMNG+ + + + + LA ++++ERQ
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA----QRKEERQ 375
Query: 320 A 320
A
Sbjct: 376 A 376
>gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo
sapiens]
Length = 485
Score = 84.3 bits (207), Expect = 2e-16
Identities = 58/195 (29%), Positives = 104/195 (53%), Gaps = 16/195 (8%)
Query: 47 GGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRG 106
G PP G++ ++FVG+IPR L E +L PLFE+ G I++L ++ DP +G ++G
Sbjct: 28 GPEPPGGQPDGMKDLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKG 87
Query: 107 YAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANN--------RLFVGSIPKNKTK 158
AF+T+C +++A +A + PG + + A++ +LFVG + K +++
Sbjct: 88 CAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSE 147
Query: 159 ENILEEFSKVTEGLVD-VILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG 217
E++L F G++D + PD K G F+++ H + AQA + G + G
Sbjct: 148 EDVLRLFQPF--GVIDECTVLRGPDGSSK--GCAFVKFSSH-TEAQAAIHALHGSQTMPG 202
Query: 218 --NVVTVEWADPVEE 230
+ + V++AD +E
Sbjct: 203 ASSSLVVKFADTDKE 217
Score = 32.7 bits (73), Expect = 0.85
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 242 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 293
LF+ +L + L + F FG + K D + FV F++ +A A+ M
Sbjct: 402 LFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAM 461
Query: 294 NGKEIEGEEIEIVLAKPPD 312
NG +I + +++ L +P D
Sbjct: 462 NGFQIGMKRLKVQLKRPKD 480
Score = 29.3 bits (64), Expect = 9.4
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 227 PVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFV 278
P +PD LFV + + E+ L+ F +FG++ + LKD AF+
Sbjct: 32 PGGQPDGMKDLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFL 91
Query: 279 HFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRK 316
+ R +A+KA ++ ++ + KP D + +
Sbjct: 92 TYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESR 129
>gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo
sapiens]
Length = 614
Score = 82.8 bits (203), Expect = 7e-16
Identities = 77/272 (28%), Positives = 134/272 (49%), Gaps = 29/272 (10%)
Query: 66 VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLC 125
++VG + D+ E L F AGPI +R+ D + ++ GYA+I F A+ A+
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 126 DSYEIRPGKHLGVCISVAN--------NRLFVGSIPKNKTKENILEEFSKVTEGLVDVIL 177
++E+ G+ + + S + +F+ ++ + + + + FS T G +++
Sbjct: 73 -NFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFS--TFG--NILS 127
Query: 178 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA 237
D+ +RGF F+ +E H++A QA M+G + + V V E + E+ A
Sbjct: 128 CKVACDEHGSRGFGFVHFETHEAAQQA-INTMNGML-LNDRKVFVGHFKSRREREAELGA 185
Query: 238 KV---KVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKD-------YAFVHFEDRGAAV 287
+ ++V+NL V E+ L+ FS+FGK+ VK ++D + FV+FE A
Sbjct: 186 RALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQ 245
Query: 288 KAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQ 319
KA+ MNGKE+ G +L +KR ERQ
Sbjct: 246 KAVVHMNGKEVSGR----LLYAGRAQKRVERQ 273
Score = 60.1 bits (144), Expect = 5e-09
Identities = 71/310 (22%), Positives = 134/310 (43%), Gaps = 49/310 (15%)
Query: 48 GPPPDSVYSGVQPGIGTE----VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQ 103
G P ++S PG+ +F+ + + L F G I ++ D
Sbjct: 79 GQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-- 136
Query: 104 NRGYAFITFCGKEAAQEAVKLCDSYEIRPGK--------------HLGVCISVANNRLFV 149
+RG+ F+ F EAAQ+A+ + + K LG N ++V
Sbjct: 137 SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTN-IYV 195
Query: 150 GSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLM 209
++P + ++ + + FS+ + L ++ D+ +R F F+ +E H+ A +A M
Sbjct: 196 KNLPVDVDEQGLQDLFSQFGKMLSVKVMR---DNSGHSRCFGFVNFEKHEEAQKAVVH-M 251
Query: 210 SGKVKVWGNVVTVEWADPVEEPDPEVMAKVKV-------------LFVRNLATTVTEEIL 256
+GK +V G ++ A E E+ + + L+V+NL ++ ++ L
Sbjct: 252 NGK-EVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 257 EKSFSEFGKLERVKKL------KDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKP 310
K FS +G + K + K + FV F A KA+ EMNG+ + + + + LA
Sbjct: 311 RKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA-- 368
Query: 311 PDKKRKERQA 320
++++ER+A
Sbjct: 369 --QRKEERKA 376
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 81.6 bits (200), Expect = 2e-15
Identities = 101/341 (29%), Positives = 139/341 (40%), Gaps = 57/341 (16%)
Query: 146 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 205
+LF+G + +T E+ L + L D ++ P K+ +R F F+ Y + + A A
Sbjct: 8 KLFIGGL-NVQTSESGLRGHFEAFGTLTDCVVVVNPQTKR-SRCFGFVTYSNVEEADAA- 64
Query: 206 RRLMSGKVKVWGNVVTVEWADPVEEPD-PEVMAKVKVLFVRNLATTVTEEILEKSFSEFG 264
+ + V GN V ++ A E+ P AKVK LFV L V E L + FS+FG
Sbjct: 65 --MAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFG 122
Query: 265 KLERVK--------KLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRK 316
+E+ + K + + FV+F++ AA KA + I+G +E+ A P K+
Sbjct: 123 TVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAA-VVKFHPIQGHRVEVKKAVP--KEDI 179
Query: 317 ERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYGY 376
SRS+ GRGRGGGR G G Y+ Y GY
Sbjct: 180 YSGGGGGGSRSSR-------------GGRGGRGRGGGRDQNGLSK---GGGGGYNSYGGY 223
Query: 377 DYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLG 436
GG G GY G GGG G G G G YSQ + G
Sbjct: 224 ------GG------GGGGGYNAYGGGGGGSSYGGSDYGNGFG-----GFGSYSQHQSSYG 266
Query: 437 PPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGY 477
P + GG GG + S G R N G GG GY
Sbjct: 267 PMKSGGGGGGGGS-------SWGGRSNSGPYRGGYGGGGGY 300
Score = 42.0 bits (97), Expect = 0.001
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 28 ALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKA 87
A + + + +D T + K DS G + ++FVG + D+ E +L+ F +
Sbjct: 63 AAMAASPHAVDGNTVELKRAVSREDSARPGAHAKV-KKLFVGGLKGDVAEGDLIEHFSQF 121
Query: 88 GPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEA 121
G + ++ D SG+ RG+ F+ F +AA +A
Sbjct: 122 GTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKA 155
Score = 32.3 bits (72), Expect = 1.1
Identities = 17/38 (44%), Positives = 18/38 (47%)
Query: 441 SRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGYN 478
S GG GG + GRG RG G R N K GYN
Sbjct: 181 SGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYN 218
>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
Length = 636
Score = 80.5 bits (197), Expect = 4e-15
Identities = 71/272 (26%), Positives = 135/272 (49%), Gaps = 29/272 (10%)
Query: 66 VFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLC 125
++VG + D+ E L F AGPI +R+ D ++ ++ GYA++ F A+ A+
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 126 DSYEIRPGKHLGVCISVAN--------NRLFVGSIPKNKTKENILEEFSKVTEGLVDVIL 177
+ +++ GK + + S + +F+ ++ K+ + + + FS L ++
Sbjct: 73 N-FDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 178 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA 237
D+ ++G+ F+ +E ++A +A + M+G + + V V +E + E+ A
Sbjct: 132 C----DENGSKGYGFVHFETQEAAERAIEK-MNGML-LNDRKVFVGRFKSRKEREAELGA 185
Query: 238 KVKV---LFVRNLATTVTEEILEKSFSEFGKLERVK-------KLKDYAFVHFEDRGAAV 287
+ K ++++N + +E L+ F +FG VK K K + FV FE A
Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 245
Query: 288 KAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQ 319
KA+DEMNGKE+ G++I + A +K+ ERQ
Sbjct: 246 KAVDEMNGKELNGKQIYVGRA----QKKVERQ 273
Score = 72.0 bits (175), Expect = 1e-12
Identities = 78/301 (25%), Positives = 134/301 (44%), Gaps = 62/301 (20%)
Query: 61 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 120
G+G +F+ + + + L F G I +++ D ++GY F+ F +EAA+
Sbjct: 97 GVGN-IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAER 153
Query: 121 AVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENIL----EEFSKV-------- 168
A++ K G+ ++ + ++FVG K +E L +EF+ V
Sbjct: 154 AIE----------KMNGMLLN--DRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGED 201
Query: 169 --TEGLVDVILYHQP--------DDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGN 218
E L D+ P D+ K++GF F+ +E H+ A +A M+GK ++ G
Sbjct: 202 MDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE-MNGK-ELNGK 259
Query: 219 VVTVEWADPVEEPDPEVMAKVKV-------------LFVRNLATTVTEEILEKSFSEFGK 265
+ V A E E+ K + L+V+NL + +E L K FS FG
Sbjct: 260 QIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319
Query: 266 LERVK------KLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQ 319
+ K + K + FV F A KA+ EMNG+ + + + + LA ++++ERQ
Sbjct: 320 ITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA----QRKEERQ 375
Query: 320 A 320
A
Sbjct: 376 A 376
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.138 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,119,756
Number of Sequences: 37866
Number of extensions: 1728902
Number of successful extensions: 20154
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 755
Number of HSP's that attempted gapping in prelim test: 8745
Number of HSP's gapped (non-prelim): 6692
length of query: 532
length of database: 18,247,518
effective HSP length: 107
effective length of query: 425
effective length of database: 14,195,856
effective search space: 6033238800
effective search space used: 6033238800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.