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Search of human proteins with 153791761
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|153791761 RMI1, RecQ mediated genome instability 1, homolog
[Homo sapiens]
(625 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|153791761 RMI1, RecQ mediated genome instability 1, homolog [... 1245 0.0
gi|225703106 tudor domain containing 3 isoform 1 [Homo sapiens] 70 8e-12
gi|225703108 tudor domain containing 3 isoform 2 [Homo sapiens] 59 1e-08
gi|13540576 tudor domain containing 3 isoform 2 [Homo sapiens] 59 1e-08
gi|4885399 structural maintenance of chromosomes 3 [Homo sapiens] 38 0.032
gi|229608967 spermatogenic leucine zipper 1 [Homo sapiens] 37 0.042
gi|75750474 spectrin domain with coiled-coils 1 NSP5a3b [Homo sa... 37 0.071
gi|75750468 spectrin domain with coiled-coils 1 NSP5a3a [Homo sa... 37 0.071
gi|75750472 spectrin domain with coiled-coils 1 NSP5b3b [Homo sa... 37 0.071
gi|75750466 spectrin domain with coiled-coils 1 NSP5b3a [Homo sa... 37 0.071
gi|156523260 SKA3 [Homo sapiens] 34 0.46
gi|155969714 nuclear protein, ataxia-telangiectasia locus [Homo... 33 0.60
gi|4506967 v-ski sarcoma viral oncogene homolog [Homo sapiens] 33 0.79
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 33 0.79
gi|55770895 ERBB2 interacting protein isoform 7 [Homo sapiens] 33 1.0
gi|8923909 ERBB2 interacting protein isoform 2 [Homo sapiens] 33 1.0
gi|87299628 biorientation of chromosomes in cell division 1-like... 33 1.0
gi|46575934 KIAA1680 protein isoform 2 [Homo sapiens] 32 1.3
gi|222831647 KIAA1680 protein isoform 1 [Homo sapiens] 32 1.3
gi|226246554 hypothetical protein LOC643677 [Homo sapiens] 32 1.8
gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo sap... 32 1.8
gi|14589946 protocadherin 11 Y-linked isoform c [Homo sapiens] 32 2.3
gi|14589944 protocadherin 11 Y-linked isoform b [Homo sapiens] 32 2.3
gi|14589942 protocadherin 11 Y-linked isoform a [Homo sapiens] 32 2.3
gi|7657443 protocadherin 11 X-linked isoform a precursor [Homo s... 32 2.3
gi|14589922 protocadherin 11 X-linked isoform d [Homo sapiens] 32 2.3
gi|14589920 protocadherin 11 X-linked isoform c [Homo sapiens] 32 2.3
gi|14589918 protocadherin 11 X-linked isoform b precursor [Homo ... 32 2.3
gi|14149702 ring finger protein 167 [Homo sapiens] 32 2.3
gi|46049114 M-phase phosphoprotein 1 [Homo sapiens] 32 2.3
>gi|153791761 RMI1, RecQ mediated genome instability 1, homolog
[Homo sapiens]
Length = 625
Score = 1245 bits (3221), Expect = 0.0
Identities = 625/625 (100%), Positives = 625/625 (100%)
Query: 1 MNVTSIALRAETWLLAAWHVKVPPMWLEACINWIQEENNNVNLSQAQMNKQVFEQWLLTD 60
MNVTSIALRAETWLLAAWHVKVPPMWLEACINWIQEENNNVNLSQAQMNKQVFEQWLLTD
Sbjct: 1 MNVTSIALRAETWLLAAWHVKVPPMWLEACINWIQEENNNVNLSQAQMNKQVFEQWLLTD 60
Query: 61 LRDLEHPLLPDGILEIPKGELNGFYALQINSLVDVSQPAYSQIQKLRGKNTTNDLVTAEA 120
LRDLEHPLLPDGILEIPKGELNGFYALQINSLVDVSQPAYSQIQKLRGKNTTNDLVTAEA
Sbjct: 61 LRDLEHPLLPDGILEIPKGELNGFYALQINSLVDVSQPAYSQIQKLRGKNTTNDLVTAEA 120
Query: 121 QVTPKPWEAKPSRMLMLQLTDGIVQIQGMEYQPIPILHSDLPPGTKILIYGNISFRLGVL 180
QVTPKPWEAKPSRMLMLQLTDGIVQIQGMEYQPIPILHSDLPPGTKILIYGNISFRLGVL
Sbjct: 121 QVTPKPWEAKPSRMLMLQLTDGIVQIQGMEYQPIPILHSDLPPGTKILIYGNISFRLGVL 180
Query: 181 LLKPENVKVLGGEVDALLEEYAQEKVLARLIGEPDLVVSVIPNNSNENIPRVTDVLDPAL 240
LLKPENVKVLGGEVDALLEEYAQEKVLARLIGEPDLVVSVIPNNSNENIPRVTDVLDPAL
Sbjct: 181 LLKPENVKVLGGEVDALLEEYAQEKVLARLIGEPDLVVSVIPNNSNENIPRVTDVLDPAL 240
Query: 241 GPSDEELLASLDENDELTANNDTSSERCFTTGSSSNTIPTRQSSFEPEFVISPRPKEEPS 300
GPSDEELLASLDENDELTANNDTSSERCFTTGSSSNTIPTRQSSFEPEFVISPRPKEEPS
Sbjct: 241 GPSDEELLASLDENDELTANNDTSSERCFTTGSSSNTIPTRQSSFEPEFVISPRPKEEPS 300
Query: 301 NLSIHVMDGELDDFSLEEALLLEETVQKEQMETKELQPLTFNRNADRSIERFSHNPNTTN 360
NLSIHVMDGELDDFSLEEALLLEETVQKEQMETKELQPLTFNRNADRSIERFSHNPNTTN
Sbjct: 301 NLSIHVMDGELDDFSLEEALLLEETVQKEQMETKELQPLTFNRNADRSIERFSHNPNTTN 360
Query: 361 NFSLTCKNGNNNWSEKNVSEQMTNEDKSFGCPSVRDQNRSIFSVHCNVPLAHDFTNKEKN 420
NFSLTCKNGNNNWSEKNVSEQMTNEDKSFGCPSVRDQNRSIFSVHCNVPLAHDFTNKEKN
Sbjct: 361 NFSLTCKNGNNNWSEKNVSEQMTNEDKSFGCPSVRDQNRSIFSVHCNVPLAHDFTNKEKN 420
Query: 421 LETDNKIKQTSSSDSHSLNNKILNREVVNYVQKRNSQISNENDCNLQSCSLRSSENSINL 480
LETDNKIKQTSSSDSHSLNNKILNREVVNYVQKRNSQISNENDCNLQSCSLRSSENSINL
Sbjct: 421 LETDNKIKQTSSSDSHSLNNKILNREVVNYVQKRNSQISNENDCNLQSCSLRSSENSINL 480
Query: 481 SIAMDLYSPPFVYLSVLMASKPKEVTTVKVKAFIVTLTGNLSSSGGIWSITAKVSDGTAY 540
SIAMDLYSPPFVYLSVLMASKPKEVTTVKVKAFIVTLTGNLSSSGGIWSITAKVSDGTAY
Sbjct: 481 SIAMDLYSPPFVYLSVLMASKPKEVTTVKVKAFIVTLTGNLSSSGGIWSITAKVSDGTAY 540
Query: 541 LDVDFVDEILTSLIGFSVPEMKQSKKDPLQYQKFLEGLQKCQRDLIDLCCLMTISFNPSL 600
LDVDFVDEILTSLIGFSVPEMKQSKKDPLQYQKFLEGLQKCQRDLIDLCCLMTISFNPSL
Sbjct: 541 LDVDFVDEILTSLIGFSVPEMKQSKKDPLQYQKFLEGLQKCQRDLIDLCCLMTISFNPSL 600
Query: 601 SKAMVLALQDVNMEHLENLKKRLNK 625
SKAMVLALQDVNMEHLENLKKRLNK
Sbjct: 601 SKAMVLALQDVNMEHLENLKKRLNK 625
>gi|225703106 tudor domain containing 3 isoform 1 [Homo sapiens]
Length = 744
Score = 69.7 bits (169), Expect = 8e-12
Identities = 49/153 (32%), Positives = 72/153 (47%), Gaps = 24/153 (15%)
Query: 57 LLTDLRDLEHPLLPDGILEIPKGELNGFYALQINSLVDVSQPAYSQIQKLRGKNTTNDLV 116
L TDLR + LP I +L G P QIQK+R D
Sbjct: 41 LNTDLRTIGKKFLPSDINSGKVEKLEG--------------PCVLQIQKIRNVAAPKD-- 84
Query: 117 TAEAQVTPKPWEAKPSRMLMLQLTDGIVQIQGMEYQPIPILHSDLPPGTKILIYGNISFR 176
E+Q P RML LQ+TDG + +E+ + + + PPGTK+ + G + +
Sbjct: 85 NEESQAAP--------RMLRLQMTDGHISCTAVEFSYMSKISLNTPPGTKVKLSGIVDIK 136
Query: 177 LGVLLLKPENVKVLGGEVDALLEEYAQEKVLAR 209
G LLL N VLGGEV+ L+E++ ++ L++
Sbjct: 137 NGFLLLNDSNTTVLGGEVEHLIEKWELQRSLSK 169
>gi|225703108 tudor domain containing 3 isoform 2 [Homo sapiens]
Length = 651
Score = 59.3 bits (142), Expect = 1e-08
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 134 MLMLQLTDGIVQIQGMEYQPIPILHSDLPPGTKILIYGNISFRLGVLLLKPENVKVLGGE 193
ML LQ+TDG + +E+ + + + PPGTK+ + G + + G LLL N VLGGE
Sbjct: 1 MLRLQMTDGHISCTAVEFSYMSKISLNTPPGTKVKLSGIVDIKNGFLLLNDSNTTVLGGE 60
Query: 194 VDALLEEYAQEKVLAR 209
V+ L+E++ ++ L++
Sbjct: 61 VEHLIEKWELQRSLSK 76
>gi|13540576 tudor domain containing 3 isoform 2 [Homo sapiens]
Length = 651
Score = 59.3 bits (142), Expect = 1e-08
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 134 MLMLQLTDGIVQIQGMEYQPIPILHSDLPPGTKILIYGNISFRLGVLLLKPENVKVLGGE 193
ML LQ+TDG + +E+ + + + PPGTK+ + G + + G LLL N VLGGE
Sbjct: 1 MLRLQMTDGHISCTAVEFSYMSKISLNTPPGTKVKLSGIVDIKNGFLLLNDSNTTVLGGE 60
Query: 194 VDALLEEYAQEKVLAR 209
V+ L+E++ ++ L++
Sbjct: 61 VEHLIEKWELQRSLSK 76
>gi|4885399 structural maintenance of chromosomes 3 [Homo sapiens]
Length = 1217
Score = 37.7 bits (86), Expect = 0.032
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 316 LEEALLLEETVQKEQMETKELQPL--TFNRNADRSIERFSHNPNTTNNFSLTCKNGNNNW 373
L+E L E ++++Q E E +P + +R I R + + G+
Sbjct: 327 LKERQKLLEKIEEKQKELAETEPKFNSVKEKEERGIARLAQATQERTDLYAKQGRGSQFT 386
Query: 374 SEKNVSEQMTNEDKSFGCPSVRDQNRSIFSVHCNVPLAHDFTNKEKNLETDNKIKQ 429
S++ + + E KS ++ D+ R I ++H + L NKEKNLE NK+ Q
Sbjct: 387 SKEERDKWIKKELKSLD-QAINDKKRQIAAIHKD--LEDTEANKEKNLEQYNKLDQ 439
>gi|229608967 spermatogenic leucine zipper 1 [Homo sapiens]
Length = 430
Score = 37.4 bits (85), Expect = 0.042
Identities = 44/202 (21%), Positives = 90/202 (44%), Gaps = 11/202 (5%)
Query: 310 ELDDFSLEEALLLEETVQKEQM--ETKELQPLTFNRNADRSIERFSHNPNTTNNFSLTCK 367
E+ D A E+ + +++ ET + ++ ++ R +++ + +T SL +
Sbjct: 75 EIKDILKNMAGFEEKITEAKELFEETNITEDVSAHKENIRGLDKINEMLSTNLPVSLAPE 134
Query: 368 NGNNNWSEKNVSEQMTNEDKSFGCPSVR--DQNRSIFSVHCNVPLAHDFTNKEKN----L 421
+N ++ + E ED S ++R D+ + S + V LA + + EK +
Sbjct: 135 KEDNEKKQEMILETNITEDVSAHKENIRGLDKINEMLSTNLPVSLAPEKEDNEKKQQMIM 194
Query: 422 ETDNKIKQTSSSDSHSLNNKILNREVVNYVQKRNSQISNENDCNLQSCSLRSSENSINLS 481
E N + T+ + L N++ ++V+N Q+ SQ +N N+Q +++ N L
Sbjct: 195 ENQNS-ENTAQVFARDLVNRLEEKKVLNETQQ--SQEKAKNRLNVQEETMKIRNNMEQLL 251
Query: 482 IAMDLYSPPFVYLSVLMASKPK 503
+ +S LS L+ S K
Sbjct: 252 QEAEHWSKQHTELSKLIKSYQK 273
>gi|75750474 spectrin domain with coiled-coils 1 NSP5a3b [Homo
sapiens]
Length = 987
Score = 36.6 bits (83), Expect = 0.071
Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 13/171 (7%)
Query: 233 TDVLDPALGP--SD-EELLASLDENDELTANNDTSSERCFTTGSSSNTIPTRQSSFEPEF 289
+DV +L P SD E + A + +N S +C T GSS N++ + E
Sbjct: 236 SDVTKASLSPDASDFEHITAETPSRPLSSTSNPFKSSKCSTAGSSPNSVSELSLASLTEK 295
Query: 290 VISPRPKEEPSNLSIHVMDGELDDFSLEEALLLEETVQKEQM-ETKELQPLTFNRNADRS 348
+ + EE + + + L + S ++ ++ E T + E++ + K + +F+++ +R+
Sbjct: 296 I---QKMEENHHSTAEELQATLQELSDQQQMVQELTAENEKLVDEKTILETSFHQHRERA 352
Query: 349 IERFSHNPNTTNNFSLTCKNGNNNWSEKNVSEQMTNEDKSFGCPSVRDQNR 399
+ N N KN E + E E K C + +Q R
Sbjct: 353 EQLSQENEKLMNLLQERVKNEEPTTQEGKIIEL---EQK---CTGILEQGR 397
>gi|75750468 spectrin domain with coiled-coils 1 NSP5a3a [Homo
sapiens]
Length = 709
Score = 36.6 bits (83), Expect = 0.071
Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 13/171 (7%)
Query: 233 TDVLDPALGP--SD-EELLASLDENDELTANNDTSSERCFTTGSSSNTIPTRQSSFEPEF 289
+DV +L P SD E + A + +N S +C T GSS N++ + E
Sbjct: 236 SDVTKASLSPDASDFEHITAETPSRPLSSTSNPFKSSKCSTAGSSPNSVSELSLASLTEK 295
Query: 290 VISPRPKEEPSNLSIHVMDGELDDFSLEEALLLEETVQKEQM-ETKELQPLTFNRNADRS 348
+ + EE + + + L + S ++ ++ E T + E++ + K + +F+++ +R+
Sbjct: 296 I---QKMEENHHSTAEELQATLQELSDQQQMVQELTAENEKLVDEKTILETSFHQHRERA 352
Query: 349 IERFSHNPNTTNNFSLTCKNGNNNWSEKNVSEQMTNEDKSFGCPSVRDQNR 399
+ N N KN E + E E K C + +Q R
Sbjct: 353 EQLSQENEKLMNLLQERVKNEEPTTQEGKIIEL---EQK---CTGILEQGR 397
>gi|75750472 spectrin domain with coiled-coils 1 NSP5b3b [Homo
sapiens]
Length = 1068
Score = 36.6 bits (83), Expect = 0.071
Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 13/171 (7%)
Query: 233 TDVLDPALGP--SD-EELLASLDENDELTANNDTSSERCFTTGSSSNTIPTRQSSFEPEF 289
+DV +L P SD E + A + +N S +C T GSS N++ + E
Sbjct: 317 SDVTKASLSPDASDFEHITAETPSRPLSSTSNPFKSSKCSTAGSSPNSVSELSLASLTEK 376
Query: 290 VISPRPKEEPSNLSIHVMDGELDDFSLEEALLLEETVQKEQM-ETKELQPLTFNRNADRS 348
+ + EE + + + L + S ++ ++ E T + E++ + K + +F+++ +R+
Sbjct: 377 I---QKMEENHHSTAEELQATLQELSDQQQMVQELTAENEKLVDEKTILETSFHQHRERA 433
Query: 349 IERFSHNPNTTNNFSLTCKNGNNNWSEKNVSEQMTNEDKSFGCPSVRDQNR 399
+ N N KN E + E E K C + +Q R
Sbjct: 434 EQLSQENEKLMNLLQERVKNEEPTTQEGKIIEL---EQK---CTGILEQGR 478
>gi|75750466 spectrin domain with coiled-coils 1 NSP5b3a [Homo
sapiens]
Length = 790
Score = 36.6 bits (83), Expect = 0.071
Identities = 38/171 (22%), Positives = 72/171 (42%), Gaps = 13/171 (7%)
Query: 233 TDVLDPALGP--SD-EELLASLDENDELTANNDTSSERCFTTGSSSNTIPTRQSSFEPEF 289
+DV +L P SD E + A + +N S +C T GSS N++ + E
Sbjct: 317 SDVTKASLSPDASDFEHITAETPSRPLSSTSNPFKSSKCSTAGSSPNSVSELSLASLTEK 376
Query: 290 VISPRPKEEPSNLSIHVMDGELDDFSLEEALLLEETVQKEQM-ETKELQPLTFNRNADRS 348
+ + EE + + + L + S ++ ++ E T + E++ + K + +F+++ +R+
Sbjct: 377 I---QKMEENHHSTAEELQATLQELSDQQQMVQELTAENEKLVDEKTILETSFHQHRERA 433
Query: 349 IERFSHNPNTTNNFSLTCKNGNNNWSEKNVSEQMTNEDKSFGCPSVRDQNR 399
+ N N KN E + E E K C + +Q R
Sbjct: 434 EQLSQENEKLMNLLQERVKNEEPTTQEGKIIEL---EQK---CTGILEQGR 478
>gi|156523260 SKA3 [Homo sapiens]
Length = 412
Score = 33.9 bits (76), Expect = 0.46
Identities = 41/159 (25%), Positives = 64/159 (40%), Gaps = 10/159 (6%)
Query: 361 NFSLTCKNGNNNWSEKNVSEQMTNEDKSFGCPS-VRDQNRSIFSVHCNVPLAHDF-TNKE 418
++++ KN NN SE+ + + D F PS + Q + + N PL F T
Sbjct: 235 DYTMGLKNARNNKSEEAIDTESRLNDNVFATPSPIIQQLEKSDAEYTNSPLVPTFCTPGL 294
Query: 419 KNLETDNKIKQTSSSDSHSLNNKILNREVVNYVQKRNSQISNENDC--NL---QSCSLRS 473
K T N I S++ S N N V+ R S + N + C NL S ++ S
Sbjct: 295 KIPSTKNSIALVSTNYPLSKTNSSSND---LEVEDRTSLVLNSDTCFENLTDPSSPTISS 351
Query: 474 SENSINLSIAMDLYSPPFVYLSVLMASKPKEVTTVKVKA 512
EN + ++ P L +L T + +KA
Sbjct: 352 YENLLRTPTPPEVTKIPEDILQLLSKYNSNLATPIAIKA 390
>gi|155969714 nuclear protein, ataxia-telangiectasia locus [Homo
sapiens]
Length = 1427
Score = 33.5 bits (75), Expect = 0.60
Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 11/136 (8%)
Query: 261 NDTSSERCFTTGSSSNTIPTRQSSFEPEFVISPRPKEEPSNLSIHVMDG---ELDDFSLE 317
N + S+ TTG + N IP Q ++SP ++ S + G + +F
Sbjct: 176 NHSQSQDTVTTGEALNVIPGAQEKKAHASLMSPGRRKSESQRKSTTLSGPHSTIRNFQDP 235
Query: 318 EALLLEETVQKEQMETKELQPLTFNRNADRSIERFSHNPNTTNNFSLTCKNGNNNWSEKN 377
A +E+ + E K L + +I +F + NN + K +N N
Sbjct: 236 NAFAVEKQMVIENAREKILSNKSLQEKLAENINKFL---TSDNNIAQVPKQTDN-----N 287
Query: 378 VSEQMTNEDKSFGCPS 393
+E T+ D+ G PS
Sbjct: 288 PTEPETSIDEFLGLPS 303
>gi|4506967 v-ski sarcoma viral oncogene homolog [Homo sapiens]
Length = 728
Score = 33.1 bits (74), Expect = 0.79
Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 10/131 (7%)
Query: 230 PRVTDVLDPALGPS---DEELLASLDENDELTANNDTSSERCFTTGSSSNTIPTRQSSFE 286
P + L P P D E ++ +E T++ + S FT+ SS+ + + +
Sbjct: 462 PGAPETLAPVAAPEEDKDSEAEVEVESREEFTSSLSSLSSPSFTSSSSAKDLGSPGARAL 521
Query: 287 PEFV-ISPRPKEEPSNLSIHV------MDGELDDFSLEEALLLEETVQKEQMETKELQPL 339
P V + P + PS L + ++G LD +E L E + + E K L
Sbjct: 522 PSAVPDAAAPADAPSGLEAELEHLRQALEGGLDTKEAKEKFLHEVVKMRVKQEEKLSAAL 581
Query: 340 TFNRNADRSIE 350
R+ + +E
Sbjct: 582 QAKRSLHQELE 592
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 33.1 bits (74), Expect = 0.79
Identities = 50/275 (18%), Positives = 106/275 (38%), Gaps = 12/275 (4%)
Query: 223 NNSNENIPRVTDVLDPALGPSDEELLASLDENDELTANNDTSSERCFTTGSS--SNTIPT 280
+N + N +D + + + + S D +D ++N+ SS ++ SS S++ +
Sbjct: 785 SNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSDSSNSSDSSDS 844
Query: 281 RQSSFEPEFVISPRPKEEPSNLSIHVMDGELDDFSLEEALLLEETVQKEQMETKELQPLT 340
SS + S R S+ S D S + + E + + ++
Sbjct: 845 SDSSDGSDSDSSNRSDSSNSSDSSDSSDSSNSSDSSDSSDSNESSNSSDSSDSSNSSDSD 904
Query: 341 FNRNADRSIERFSHNPNTTNNFSLTCKNGNNN----------WSEKNVSEQMTNEDKSFG 390
+ +++ S S N + ++ S + N N++ S+ + S +N S
Sbjct: 905 SSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSNSSDSSN 964
Query: 391 CPSVRDQNRSIFSVHCNVPLAHDFTNKEKNLETDNKIKQTSSSDSHSLNNKILNREVVNY 450
D N S S N + D ++ + ++ + + SSDS ++ + + N
Sbjct: 965 SSDSSDSNSSDSSDSSNSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSNSSDSSNS 1024
Query: 451 VQKRNSQISNENDCNLQSCSLRSSENSINLSIAMD 485
NS S+++ + S S +S + S + D
Sbjct: 1025 SDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSNSSD 1059
Score = 32.7 bits (73), Expect = 1.0
Identities = 45/249 (18%), Positives = 99/249 (39%), Gaps = 10/249 (4%)
Query: 243 SDEELLASLDENDELTANNDTSSERCFTTGSSSNTIPTRQSSFEPEFVISPRPKEEPSNL 302
SD + S +D ++++D+S + SSN+ + SS + S + S+
Sbjct: 567 SDSDSSDSNSSSDSDSSDSDSSDSSDSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSKSDS 626
Query: 303 SIHVMDGELDDFSLEEALLLEETVQKEQMETKELQPLTFNRNADRSIERFSHNPNTTNNF 362
S D D + + ++ + + + + + N+ S + + +++++
Sbjct: 627 SKSESDSSDSDSKSDSS----DSNSSDSSDNSDSSDSSNSSNSSDSSDSSDSSDSSSSSD 682
Query: 363 SLTCKNGNNNWSEKNVSEQMTNEDKS---FGCPSVRDQNRSIFSVHCNVPLAHDFTNKEK 419
S + +++ N SE + D S S + S S N + D +N
Sbjct: 683 SSNSSDSSDSSDSSNSSESSDSSDSSDSDSSDSSDSSNSNSSDSDSSNSSDSSDSSNSSD 742
Query: 420 NLETD---NKIKQTSSSDSHSLNNKILNREVVNYVQKRNSQISNENDCNLQSCSLRSSEN 476
+ ++ N + SSDS + ++ + + + NS SN++ + S +S +
Sbjct: 743 SSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSNDSSNSSDSSDSSNSSD 802
Query: 477 SINLSIAMD 485
S N S + D
Sbjct: 803 SSNSSDSSD 811
Score = 32.3 bits (72), Expect = 1.3
Identities = 41/233 (17%), Positives = 101/233 (43%), Gaps = 10/233 (4%)
Query: 253 ENDELTANNDTSSERCFTTGSSSNTIPTRQSSFEPEFVISPRPKEEPSNLSIHVMDGELD 312
E+D+ + +DT++ G++ N + S + + S + SN S D
Sbjct: 511 EDDDSDSTSDTNNSDSNGNGNNGNDDNDKSDSGKGKSDSSDSDSSDSSNSS-DSSDSSDS 569
Query: 313 DFSLEEALLLEETVQKEQMETKELQPLTFNRNADRSIERFSHNPNTTNNFSLTCKNGNNN 372
D S + ++ + ++ + + ++D S S + +++++ + +++
Sbjct: 570 DSSDSNSSSDSDSSDSDSSDSSDSDSSDSSNSSDSSDS--SDSSDSSDSSDSSDSKSDSS 627
Query: 373 WSEKNVSEQMTNEDKSFGCPSVRDQNRSIFSVHCNVPLAHDFTNKEKNLETDNKIKQTSS 432
SE + S+ + D S D N S S + + + + +N + ++ + +SS
Sbjct: 628 KSESDSSDSDSKSDSS-------DSNSSDSSDNSDSSDSSNSSNSSDSSDSSDSSDSSSS 680
Query: 433 SDSHSLNNKILNREVVNYVQKRNSQISNENDCNLQSCSLRSSENSINLSIAMD 485
SDS + ++ + + N + +S S+++D + S S S+ + + S + D
Sbjct: 681 SDSSNSSDSSDSSDSSNSSESSDSSDSSDSDSSDSSDSSNSNSSDSDSSNSSD 733
>gi|55770895 ERBB2 interacting protein isoform 7 [Homo sapiens]
Length = 1302
Score = 32.7 bits (73), Expect = 1.0
Identities = 39/205 (19%), Positives = 86/205 (41%), Gaps = 33/205 (16%)
Query: 254 NDELTANNDTSSERCFTTGSSSNTIPTRQSSFEPEFVISP----------RPKEEPSNLS 303
+DE+T N++ ++ C + S+++ S + + SP + ++E N +
Sbjct: 644 SDEVTHNSNQNNSNCSSPSRMSDSVSLNTDSSQDTSLCSPVKQTHIDINSKIRQEDENFN 703
Query: 304 IHVMDGELDDFSLEEALLLEETVQKEQMETKELQPLTFNRNADRSIERFSHNPNTTNNFS 363
+ +G++ + S EE + + K+ ++ N + + + ++T
Sbjct: 704 SLLQNGDILNSSTEEKF--------KAHDKKDFNLPEYDLNVEERLVLIEKSVDSTATAD 755
Query: 364 LTCKNGNNNWSEKNVSEQMTNEDKSFGCPSVRDQNR--------SIFSVHCNVPLAH-DF 414
T K + N N+++ +TN+ P + ++++ S S++ H +
Sbjct: 756 DTHKLDHINM---NLNKLITNDTFQ---PEIMERSKTQDIVLGTSFLSINSKEETEHLEN 809
Query: 415 TNKEKNLETDNKIKQTSSSDSHSLN 439
NK NLE+ NK+ S S S N
Sbjct: 810 GNKYPNLESVNKVNGHSEETSQSPN 834
>gi|8923909 ERBB2 interacting protein isoform 2 [Homo sapiens]
Length = 1371
Score = 32.7 bits (73), Expect = 1.0
Identities = 39/205 (19%), Positives = 86/205 (41%), Gaps = 33/205 (16%)
Query: 254 NDELTANNDTSSERCFTTGSSSNTIPTRQSSFEPEFVISP----------RPKEEPSNLS 303
+DE+T N++ ++ C + S+++ S + + SP + ++E N +
Sbjct: 644 SDEVTHNSNQNNSNCSSPSRMSDSVSLNTDSSQDTSLCSPVKQTHIDINSKIRQEDENFN 703
Query: 304 IHVMDGELDDFSLEEALLLEETVQKEQMETKELQPLTFNRNADRSIERFSHNPNTTNNFS 363
+ +G++ + S EE + + K+ ++ N + + + ++T
Sbjct: 704 SLLQNGDILNSSTEEKF--------KAHDKKDFNLPEYDLNVEERLVLIEKSVDSTATAD 755
Query: 364 LTCKNGNNNWSEKNVSEQMTNEDKSFGCPSVRDQNR--------SIFSVHCNVPLAH-DF 414
T K + N N+++ +TN+ P + ++++ S S++ H +
Sbjct: 756 DTHKLDHINM---NLNKLITNDTFQ---PEIMERSKTQDIVLGTSFLSINSKEETEHLEN 809
Query: 415 TNKEKNLETDNKIKQTSSSDSHSLN 439
NK NLE+ NK+ S S S N
Sbjct: 810 GNKYPNLESVNKVNGHSEETSQSPN 834
>gi|87299628 biorientation of chromosomes in cell division 1-like
[Homo sapiens]
Length = 3051
Score = 32.7 bits (73), Expect = 1.0
Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 40/174 (22%)
Query: 304 IHVMDGELDDFSLEEALLLEETVQKEQMETKELQPLTFNRNADRSIERFSHNPNTTNNFS 363
+H E + S E+ L +EE +QK+ +TK ++D ER S + N S
Sbjct: 750 MHKTGDETELHSSEKGLKVEENIQKQSQQTK--------LSSDDKTERKSKHRN-ERKLS 800
Query: 364 LTCKNGNNNWSEKNVSEQMTNEDKSFGCPSVRDQNRSIFSVHCNVPLAHDFTNKEKNL-- 421
+ K+G K VSE + D+ +VR +N KE+ L
Sbjct: 801 VLGKDG------KPVSEYIIKTDE-----NVRKEN----------------NKKERRLSA 833
Query: 422 -ETDNKIKQTSSSDSHSLNNKILNREVVNYVQKRNSQISNENDCNLQSCSLRSS 474
+T + K SSDS + + +++ +Q+R+ S E+ C++ S ++ S+
Sbjct: 834 EKTKAEHKSRRSSDSKIQKDSLGSKQHGITLQRRSESYS-EDKCDMDSTNMDSN 886
>gi|46575934 KIAA1680 protein isoform 2 [Homo sapiens]
Length = 677
Score = 32.3 bits (72), Expect = 1.3
Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 8/122 (6%)
Query: 270 TTGSSSNTIPTRQSSFEPEFVI-----SPRPKEEPSNLSIHVMDGELDDFSLEEALLLEE 324
+T SSS + R+S F + PK+EP+N ++ + +G S + L LEE
Sbjct: 48 STNSSSGSTGKRRSIFRTPSISFHHKKGSEPKQEPTNQNLSISNGAQPGHSNMQKLSLEE 107
Query: 325 TVQ---KEQMETKELQPLTFNRNADRSIERFSHNPNTTNNFSLTCKNGNNNWSEKNVSEQ 381
++ + + + R+ ER + N F +G + + +E
Sbjct: 108 HIKTRGRHSVGFSSSRNKKITRSLTEDFEREKEHSTNKNVFINCLSSGKSEGDDSGFTED 167
Query: 382 MT 383
T
Sbjct: 168 QT 169
>gi|222831647 KIAA1680 protein isoform 1 [Homo sapiens]
Length = 900
Score = 32.3 bits (72), Expect = 1.3
Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 8/122 (6%)
Query: 270 TTGSSSNTIPTRQSSFEPEFVI-----SPRPKEEPSNLSIHVMDGELDDFSLEEALLLEE 324
+T SSS + R+S F + PK+EP+N ++ + +G S + L LEE
Sbjct: 48 STNSSSGSTGKRRSIFRTPSISFHHKKGSEPKQEPTNQNLSISNGAQPGHSNMQKLSLEE 107
Query: 325 TVQ---KEQMETKELQPLTFNRNADRSIERFSHNPNTTNNFSLTCKNGNNNWSEKNVSEQ 381
++ + + + R+ ER + N F +G + + +E
Sbjct: 108 HIKTRGRHSVGFSSSRNKKITRSLTEDFEREKEHSTNKNVFINCLSSGKSEGDDSGFTED 167
Query: 382 MT 383
T
Sbjct: 168 QT 169
>gi|226246554 hypothetical protein LOC643677 [Homo sapiens]
Length = 7081
Score = 32.0 bits (71), Expect = 1.8
Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 20/155 (12%)
Query: 228 NIPRVTDVLDPALGPSDEELLAS--LDENDELTANNDT-SSERCFTTGSSSNTIPTRQSS 284
+IP+ L+ A+ ++L++S ++ N+ + D SSE S+ +PT
Sbjct: 682 HIPKHKTSLEEAISKPMQKLVSSPEMESNNRMKIQEDLQSSENSHLQLSNGEELPTSTPK 741
Query: 285 FEPEFVISPRPKE--------EPSNLSIHVMDGELDDFSLEEALLLEETVQKEQMETKEL 336
+ F K+ E SN+ + + G S EE ++ V E + KE
Sbjct: 742 TQRCFPRENTQKQKDFLELVLELSNVGLLISPGSKMHKSSEELEAIKIQVNTESVNLKES 801
Query: 337 QPLTFNRNADRSIERFSHNPNTTNNFSLTCKNGNN 371
+PL N D + + L C G+N
Sbjct: 802 KPLILNVTEDSDLR---------ESEELECNTGSN 827
>gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo
sapiens]
Length = 6929
Score = 32.0 bits (71), Expect = 1.8
Identities = 35/155 (22%), Positives = 61/155 (39%), Gaps = 20/155 (12%)
Query: 228 NIPRVTDVLDPALGPSDEELLAS--LDENDELTANNDT-SSERCFTTGSSSNTIPTRQSS 284
+IP+ L+ A+ ++L++S ++ N+ + D SSE S+ +PT
Sbjct: 611 HIPKHKTSLEEAISKPMQKLVSSPEMESNNRMKIQEDLQSSENSHLQLSNGEELPTSTPK 670
Query: 285 FEPEFVISPRPKE--------EPSNLSIHVMDGELDDFSLEEALLLEETVQKEQMETKEL 336
+ F K+ E SN+ + + G S EE ++ V E + KE
Sbjct: 671 TQRCFPRENTQKQKDFLELVLELSNVGLLISPGSKMHKSSEELEAIKIQVNTESVNLKES 730
Query: 337 QPLTFNRNADRSIERFSHNPNTTNNFSLTCKNGNN 371
+PL N D + + L C G+N
Sbjct: 731 KPLILNVTEDSDLR---------ESEELECNTGSN 756
>gi|14589946 protocadherin 11 Y-linked isoform c [Homo sapiens]
Length = 1340
Score = 31.6 bits (70), Expect = 2.3
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 25/83 (30%)
Query: 206 VLARLIGEPDLV------VSVIPNNSN--------------ENIPR-----VTDVLDPAL 240
+LA+ G P L VS+I N N EN+PR + V DP
Sbjct: 572 ILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGLITVTDPDY 631
Query: 241 GPSDEELLASLDENDELTANNDT 263
G + L+ LDEND+ T ++ T
Sbjct: 632 GDNSAVTLSILDENDDFTIDSQT 654
>gi|14589944 protocadherin 11 Y-linked isoform b [Homo sapiens]
Length = 1048
Score = 31.6 bits (70), Expect = 2.3
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 25/83 (30%)
Query: 206 VLARLIGEPDLV------VSVIPNNSN--------------ENIPR-----VTDVLDPAL 240
+LA+ G P L VS+I N N EN+PR + V DP
Sbjct: 572 ILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGLITVTDPDY 631
Query: 241 GPSDEELLASLDENDELTANNDT 263
G + L+ LDEND+ T ++ T
Sbjct: 632 GDNSAVTLSILDENDDFTIDSQT 654
>gi|14589942 protocadherin 11 Y-linked isoform a [Homo sapiens]
Length = 1037
Score = 31.6 bits (70), Expect = 2.3
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 25/83 (30%)
Query: 206 VLARLIGEPDLV------VSVIPNNSN--------------ENIPR-----VTDVLDPAL 240
+LA+ G P L VS+I N N EN+PR + V DP
Sbjct: 561 ILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYKFYVPENLPRHGTVGLITVTDPDY 620
Query: 241 GPSDEELLASLDENDELTANNDT 263
G + L+ LDEND+ T ++ T
Sbjct: 621 GDNSAVTLSILDENDDFTIDSQT 643
>gi|7657443 protocadherin 11 X-linked isoform a precursor [Homo
sapiens]
Length = 1021
Score = 31.6 bits (70), Expect = 2.3
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 25/83 (30%)
Query: 206 VLARLIGEPDLV------VSVIPNNSN--------------ENIPR-----VTDVLDPAL 240
+LA+ G P L VS+I N N EN+PR + V DP
Sbjct: 540 ILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYNFYVPENLPRHGTVGLITVTDPDY 599
Query: 241 GPSDEELLASLDENDELTANNDT 263
G + L+ LDEND+ T ++ T
Sbjct: 600 GDNSAVTLSILDENDDFTIDSQT 622
>gi|14589922 protocadherin 11 X-linked isoform d [Homo sapiens]
Length = 1337
Score = 31.6 bits (70), Expect = 2.3
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 25/83 (30%)
Query: 206 VLARLIGEPDLV------VSVIPNNSN--------------ENIPR-----VTDVLDPAL 240
+LA+ G P L VS+I N N EN+PR + V DP
Sbjct: 540 ILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYNFYVPENLPRHGTVGLITVTDPDY 599
Query: 241 GPSDEELLASLDENDELTANNDT 263
G + L+ LDEND+ T ++ T
Sbjct: 600 GDNSAVTLSILDENDDFTIDSQT 622
>gi|14589920 protocadherin 11 X-linked isoform c [Homo sapiens]
Length = 1347
Score = 31.6 bits (70), Expect = 2.3
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 25/83 (30%)
Query: 206 VLARLIGEPDLV------VSVIPNNSN--------------ENIPR-----VTDVLDPAL 240
+LA+ G P L VS+I N N EN+PR + V DP
Sbjct: 540 ILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYNFYVPENLPRHGTVGLITVTDPDY 599
Query: 241 GPSDEELLASLDENDELTANNDT 263
G + L+ LDEND+ T ++ T
Sbjct: 600 GDNSAVTLSILDENDDFTIDSQT 622
>gi|14589918 protocadherin 11 X-linked isoform b precursor [Homo
sapiens]
Length = 1025
Score = 31.6 bits (70), Expect = 2.3
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 25/83 (30%)
Query: 206 VLARLIGEPDLV------VSVIPNNSN--------------ENIPR-----VTDVLDPAL 240
+LA+ G P L VS+I N N EN+PR + V DP
Sbjct: 540 ILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEYNFYVPENLPRHGTVGLITVTDPDY 599
Query: 241 GPSDEELLASLDENDELTANNDT 263
G + L+ LDEND+ T ++ T
Sbjct: 600 GDNSAVTLSILDENDDFTIDSQT 622
>gi|14149702 ring finger protein 167 [Homo sapiens]
Length = 350
Score = 31.6 bits (70), Expect = 2.3
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 241 GPSDE---ELLASLDENDELTANNDTSSERCFTTGSSSNTIPTRQSSFEPEFVISPRPKE 297
GP DE E +E DE + +SER GSS T+PT S P ++ P P
Sbjct: 278 GPGDEDQEEETQGQEEGDEGEPRDHPASERTPLLGSSP-TLPTSFGSLAPAPLVFPGPST 336
Query: 298 EP 299
+P
Sbjct: 337 DP 338
>gi|46049114 M-phase phosphoprotein 1 [Homo sapiens]
Length = 1780
Score = 31.6 bits (70), Expect = 2.3
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 412 HDFTNKEKNLETDNKIKQTSSSDSHSLNNKILNREVVNYVQKRNSQISNE----NDCNLQ 467
++F N + ++E K + + S +NNK++ E V + S+I +E N+ LQ
Sbjct: 741 NEFQNLKSHMENTFKCNDKADTSSLIINNKLICNETVEVPKDSKSKICSERKRVNENELQ 800
Query: 468 SCSLRSSENSINLSIAM 484
+ + SI++S A+
Sbjct: 801 QDEPPAKKGSIHVSSAI 817
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.130 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,690,060
Number of Sequences: 37866
Number of extensions: 1073027
Number of successful extensions: 2640
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 2603
Number of HSP's gapped (non-prelim): 85
length of query: 625
length of database: 18,247,518
effective HSP length: 108
effective length of query: 517
effective length of database: 14,157,990
effective search space: 7319680830
effective search space used: 7319680830
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.