Guide to the Human Genome
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Name: TDRD3 Sequence: fasta or formatted (651aa) NCBI GI: 13540576
Description:

tudor domain containing 3 isoform 2

Referenced in:

Additional Interaction Domain Families

Other entries for this name:
alt prot [744aa] tudor domain containing 3 isoform 1
alt mRNA [651aa] tudor domain containing 3 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         29           2
 C cysteine            0.8          5           1
 D aspartate           4.9         32           2
 E glutamate           8.1         53           3
 F phenylalanine       3.4         22           1
 G glycine             8.3         54           6
 H histidine           1.8         12           1
 I isoleucine          3.7         24           1
 K lysine              7.7         50           2
 L leucine             6.1         40           3
 M methionine          2.2         14           1
 N asparagine          6.8         44           2
 P proline             6.9         45           3
 Q glutamine           4.8         31           2
 R arginine            7.7         50           2
 S serine              8.8         57           2
 T threonine           5.1         33           2
 V valine              5.1         33           2
 W tryptophan          0.8          5           1
 Y tyrosine            2.8         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tudor domain containing 3 isoform 2 
TDRD3                 1.000   tudor domain containing 3 isoform 2 
TDRD3                 1.000   tudor domain containing 3 isoform 1 
RMI1                  0.026   RMI1, RecQ mediated genome instability 1, homolog [...
SMNDC1                0.023   survival motor neuron domain containing 1 
SMN2                  0.015   survival of motor neuron 2, centromeric isoform b [H...
SMN2                  0.015   survival of motor neuron 2, centromeric isoform c [H...
SMN2                  0.015   survival of motor neuron 2, centromeric isoform d [H...
SMN2                  0.015   survival of motor neuron 2, centromeric isoform a [H...
SMN1                  0.015   survival of motor neuron 1, telomeric isoform d [Homo...
SMN1                  0.015   survival of motor neuron 1, telomeric isoform b [Hom...
NIPBL                 0.015   delangin isoform B 
NIPBL                 0.015   delangin isoform A 
TNRC6C                0.013   trinucleotide repeat containing 6C isoform 1 
TNRC6C                0.013   trinucleotide repeat containing 6C isoform 2 
TDRD1                 0.013   tudor domain containing 1 
PPIG                  0.009   peptidylprolyl isomerase G 
FLG                   0.009   filaggrin 
LOC100129278          0.009   PREDICTED: similar to tudor domain containing 1 [Ho...
LOC100129278          0.009   PREDICTED: similar to tudor domain containing 1 [Ho...
LOC100129278          0.009   PREDICTED: similar to tudor domain containing 1 [Ho...
LOC100170229          0.008   hypothetical protein LOC100170229 
GNAS                  0.008   GNAS complex locus NESP55 
BAT2D1                0.008   HBxAg transactivated protein 2 
UBAC1                 0.008   ubiquitin associated domain containing 1 
CHD1                  0.008   chromodomain helicase DNA binding protein 1 
SFRS4                 0.008   splicing factor, arginine/serine-rich 4 
TOPORS                0.008   topoisomerase I binding, arginine/serine-rich 
SRRM2                 0.008   splicing coactivator subunit SRm300 
HRC                   0.008   histidine rich calcium binding protein precursor [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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