Guide to the Human Genome
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Name: FAM190A Sequence: fasta or formatted (677aa) NCBI GI: 46575934
Description:

KIAA1680 protein isoform 2

Referenced in:

Cerebellum

Other entries for this name:
alt prot [900aa] KIAA1680 protein isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         30           2
 C cysteine            1.5         10           1
 D aspartate           4.1         28           2
 E glutamate           8.3         56           2
 F phenylalanine       3.2         22           1
 G glycine             5.2         35           2
 H histidine           3.1         21           2
 I isoleucine          3.5         24           2
 K lysine              5.8         39           2
 L leucine             8.7         59           3
 M methionine          2.5         17           1
 N asparagine          4.4         30           2
 P proline             6.1         41           1
 Q glutamine           4.0         27           2
 R arginine            5.8         39           2
 S serine             17.0        115           4
 T threonine           6.4         43           3
 V valine              4.9         33           2
 W tryptophan          0.1          1           1
 Y tyrosine            1.0          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   KIAA1680 protein isoform 2 
FAM190A               0.988   KIAA1680 protein isoform 1 
FAM190B               0.042   granule cell antiserum positive 14 
DSPP                  0.018   dentin sialophosphoprotein preproprotein 
SFRS4                 0.015   splicing factor, arginine/serine-rich 4 
MUC3A                 0.015   PREDICTED: mucin 3A, cell surface associated, parti...
FLG                   0.014   filaggrin 
MLLT3                 0.013   myeloid/lymphoid or mixed-lineage leukemia (trithor...
CIR1                  0.011   CBF1 interacting corepressor 
PNN                   0.011   pinin, desmosome associated protein 
SRRM2                 0.011   splicing coactivator subunit SRm300 
LOC100133408          0.011   PREDICTED: similar to mucin 
CRKRS                 0.011   Cdc2-related kinase, arginine/serine-rich isoform 2...
CRKRS                 0.011   Cdc2-related kinase, arginine/serine-rich isoform 1...
GPATCH8               0.010   G patch domain containing 8 
CDSN                  0.010   corneodesmosin precursor 
PTPN12                0.009   protein tyrosine phosphatase, non-receptor type 12 ...
PTPN12                0.009   protein tyrosine phosphatase, non-receptor type 12 ...
PTPN12                0.009   protein tyrosine phosphatase, non-receptor type 12 ...
GPR112                0.009   G-protein coupled receptor 112 
SETD1A                0.009   SET domain containing 1A 
AIM1                  0.009   absent in melanoma 1 
SNIP1                 0.009   Smad nuclear interacting protein 
UBAP2L                0.009   ubiquitin associated protein 2-like isoform a [Homo...
UBAP2L                0.009   ubiquitin associated protein 2-like isoform b [Homo...
ANKHD1                0.009   ankyrin repeat and KH domain containing 1 isoform 1 ...
ANKHD1-EIF4EBP3       0.009   ANKHD1-EIF4EBP3 protein 
SFRS18                0.009   splicing factor, arginine/serine-rich 130 
SFRS18                0.009   splicing factor, arginine/serine-rich 130 
MUC3A                 0.008   PREDICTED: mucin 3A, intestinal 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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