Guide to the Human Genome
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Name: RMI1 Sequence: fasta or formatted (625aa) NCBI GI: 153791761
Description:

RMI1, RecQ mediated genome instability 1, homolog

Referenced in:

Additional Interaction Domain Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         27           2
 C cysteine            1.6         10           2
 D aspartate           5.4         34           2
 E glutamate           8.0         50           2
 F phenylalanine       3.0         19           1
 G glycine             3.7         23           2
 H histidine           1.4          9           1
 I isoleucine          5.4         34           1
 K lysine              5.9         37           2
 L leucine            12.0         75           3
 M methionine          2.4         15           1
 N asparagine          8.6         54           3
 P proline             5.4         34           2
 Q glutamine           5.0         31           1
 R arginine            3.2         20           1
 S serine              9.4         59           3
 T threonine           5.4         34           2
 V valine              6.7         42           2
 W tryptophan          1.3          8           1
 Y tyrosine            1.6         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RMI1, RecQ mediated genome instability 1, homolog [... 
TDRD3                 0.037   tudor domain containing 3 isoform 1 
TDRD3                 0.028   tudor domain containing 3 isoform 2 
TDRD3                 0.028   tudor domain containing 3 isoform 2 
SMC3                  0.011   structural maintenance of chromosomes 3 
SPZ1                  0.010   spermatogenic leucine zipper 1 
CYTSB                 0.010   spectrin domain with coiled-coils 1 NSP5a3b 
CYTSB                 0.010   spectrin domain with coiled-coils 1 NSP5a3a 
CYTSB                 0.010   spectrin domain with coiled-coils 1 NSP5b3b 
CYTSB                 0.010   spectrin domain with coiled-coils 1 NSP5b3a 
C13orf3               0.007   SKA3 
NPAT                  0.007   nuclear protein,  ataxia-telangiectasia locus [Homo...
SKI                   0.007   v-ski sarcoma viral oncogene homolog 
DSPP                  0.007   dentin sialophosphoprotein preproprotein 
ERBB2IP               0.007   ERBB2 interacting protein isoform 7 
ERBB2IP               0.007   ERBB2 interacting protein isoform 2 
BOD1L                 0.007   biorientation of chromosomes in cell division 1-like...
FAM190A               0.006   KIAA1680 protein isoform 2 
FAM190A               0.006   KIAA1680 protein isoform 1 
LOC643677             0.006   hypothetical protein LOC643677 
LOC643677             0.006   PREDICTED: hypothetical protein LOC643677 
PCDH11Y               0.006   protocadherin 11 Y-linked isoform c 
PCDH11Y               0.006   protocadherin 11 Y-linked isoform b 
PCDH11Y               0.006   protocadherin 11 Y-linked isoform a 
PCDH11X               0.006   protocadherin 11 X-linked isoform a precursor 
PCDH11X               0.006   protocadherin 11 X-linked isoform d 
PCDH11X               0.006   protocadherin 11 X-linked isoform c 
PCDH11X               0.006   protocadherin 11 X-linked isoform b precursor 
RNF167                0.006   ring finger protein 167 
KIF20B                0.006   M-phase phosphoprotein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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