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Search of human proteins with 153791494
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|153791494 Rhox homeobox family, member 2B [Homo sapiens]
(288 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|153791494 Rhox homeobox family, member 2B [Homo sapiens] 596 e-171
gi|14249119 Rhox homeobox family, member 2 [Homo sapiens] 589 e-169
gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho... 115 3e-26
gi|23943886 Rhox homeobox family, member 1 [Homo sapiens] 81 1e-15
gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens] 79 6e-15
gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo sapi... 79 6e-15
gi|7706659 paired related homeobox 2 [Homo sapiens] 78 8e-15
gi|189083681 paired box gene 6 isoform a [Homo sapiens] 75 5e-14
gi|4580424 paired box gene 6 isoform b [Homo sapiens] 75 5e-14
gi|4505615 paired box gene 6 isoform a [Homo sapiens] 75 5e-14
gi|89145413 short stature homeobox 2 isoform a [Homo sapiens] 71 1e-12
gi|14249388 retina and anterior neural fold homeobox 2 [Homo sap... 71 1e-12
gi|152963644 paired-like homeodomain transcription factor 1 [Hom... 70 2e-12
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 70 2e-12
gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens] 70 2e-12
gi|24497589 aristaless related homeobox [Homo sapiens] 70 2e-12
gi|46249382 paired-like homeobox 2a [Homo sapiens] 70 2e-12
gi|14149760 orthopedia homeobox [Homo sapiens] 70 2e-12
gi|239757894 PREDICTED: similar to Rhox homeobox family, member ... 69 5e-12
gi|55743092 aristaless-like homeobox 4 [Homo sapiens] 69 6e-12
gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens] 67 1e-11
gi|169881277 PROP paired-like homeobox 1 [Homo sapiens] 67 2e-11
gi|4826912 paired-like homeodomain 3 [Homo sapiens] 67 2e-11
gi|21361183 paired-like homeodomain transcription factor 2 isofo... 67 2e-11
gi|4505619 paired box 7 isoform 1 [Homo sapiens] 67 2e-11
gi|7524359 paired box 7 isoform 2 [Homo sapiens] 67 2e-11
gi|207029223 paired box 7 isoform 3 [Homo sapiens] 67 2e-11
gi|24234711 paired-like homeodomain transcription factor 2 isofo... 65 5e-11
gi|7110735 ventral anterior homeobox 2 [Homo sapiens] 65 5e-11
gi|4885363 goosecoid homeobox 2 [Homo sapiens] 65 5e-11
>gi|153791494 Rhox homeobox family, member 2B [Homo sapiens]
Length = 288
Score = 596 bits (1536), Expect = e-171
Identities = 288/288 (100%), Positives = 288/288 (100%)
Query: 1 MEPPDQCSQYMTSLLSPAVDDEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAGEKL 60
MEPPDQCSQYMTSLLSPAVDDEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAGEKL
Sbjct: 1 MEPPDQCSQYMTSLLSPAVDDEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAGEKL 60
Query: 61 KSAGAQGGEEKDGGGEEKDGGGAGVPGHLWEGNLEGTSGSDGNVEDSDQSEKEPGQQYSR 120
KSAGAQGGEEKDGGGEEKDGGGAGVPGHLWEGNLEGTSGSDGNVEDSDQSEKEPGQQYSR
Sbjct: 61 KSAGAQGGEEKDGGGEEKDGGGAGVPGHLWEGNLEGTSGSDGNVEDSDQSEKEPGQQYSR 120
Query: 121 PQGAVGGLEPGNAQQPNVHAFTPLQLQELECIFQREQFPSEFLRRRLARSMNVTELAVQI 180
PQGAVGGLEPGNAQQPNVHAFTPLQLQELECIFQREQFPSEFLRRRLARSMNVTELAVQI
Sbjct: 121 PQGAVGGLEPGNAQQPNVHAFTPLQLQELECIFQREQFPSEFLRRRLARSMNVTELAVQI 180
Query: 181 WFENRRAKWRRHQRALMARNMLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSS 240
WFENRRAKWRRHQRALMARNMLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSS
Sbjct: 181 WFENRRAKWRRHQRALMARNMLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSS 240
Query: 241 SLCFPMPPFPPPSLPLPLMLLPPMPPAGQAEFGPFPFVIVPSFTFPNV 288
SLCFPMPPFPPPSLPLPLMLLPPMPPAGQAEFGPFPFVIVPSFTFPNV
Sbjct: 241 SLCFPMPPFPPPSLPLPLMLLPPMPPAGQAEFGPFPFVIVPSFTFPNV 288
>gi|14249119 Rhox homeobox family, member 2 [Homo sapiens]
Length = 288
Score = 589 bits (1519), Expect = e-169
Identities = 286/288 (99%), Positives = 287/288 (99%)
Query: 1 MEPPDQCSQYMTSLLSPAVDDEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAGEKL 60
MEPPDQCSQYMTSLLSPAVDDEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAGEKL
Sbjct: 1 MEPPDQCSQYMTSLLSPAVDDEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAGEKL 60
Query: 61 KSAGAQGGEEKDGGGEEKDGGGAGVPGHLWEGNLEGTSGSDGNVEDSDQSEKEPGQQYSR 120
KSAGAQGGEEKDGGGEEKDGGGAGVPGHLWEG+LEGTSGSDGNVEDSDQSEKEPGQQYSR
Sbjct: 61 KSAGAQGGEEKDGGGEEKDGGGAGVPGHLWEGDLEGTSGSDGNVEDSDQSEKEPGQQYSR 120
Query: 121 PQGAVGGLEPGNAQQPNVHAFTPLQLQELECIFQREQFPSEFLRRRLARSMNVTELAVQI 180
PQGAVGGLEPGNAQQPNVHAFTPLQLQELE IFQREQFPSEFLRRRLARSMNVTELAVQI
Sbjct: 121 PQGAVGGLEPGNAQQPNVHAFTPLQLQELERIFQREQFPSEFLRRRLARSMNVTELAVQI 180
Query: 181 WFENRRAKWRRHQRALMARNMLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSS 240
WFENRRAKWRRHQRALMARNMLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSS
Sbjct: 181 WFENRRAKWRRHQRALMARNMLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSS 240
Query: 241 SLCFPMPPFPPPSLPLPLMLLPPMPPAGQAEFGPFPFVIVPSFTFPNV 288
SLCFPMPPFPPPSLPLPLMLLPPMPPAGQAEFGPFPFVIVPSFTFPNV
Sbjct: 241 SLCFPMPPFPPPSLPLPLMLLPPMPPAGQAEFGPFPFVIVPSFTFPNV 288
>gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Homo
sapiens]
Length = 406
Score = 115 bits (289), Expect = 3e-26
Identities = 87/258 (33%), Positives = 122/258 (47%), Gaps = 32/258 (12%)
Query: 20 DDEKELQDMNAMVLSLTEEVKEEEEDAQPEPEQGTAAGEKLKSAGAQGGEEKDGGGEEKD 79
+D +E+ D V SL E+EE+ + +PE GT A + + G+ +++D ++
Sbjct: 21 EDIEEVNDEKLTVTSLMARGGEDEENTRSKPEYGTEAENNVGTEGSVPSDDQD-----RE 75
Query: 80 GGGAGVPGHLWEG----NLEGTSGSDGNVEDSDQSEKEPGQQYSRPQGAVG-----GLEP 130
GGG P E E +E + E+ P PQ A G G +P
Sbjct: 76 GGGGHEPEQQQEEPPLTKPEQQQEEPPLLELKQEQEEPPQTTVEGPQPAEGPQTAEGPQP 135
Query: 131 GNAQQPNVHAFTPLQLQELECIFQREQFPSEFLRRRLARSMNVTELAVQIWFENRRAKWR 190
++ AFT QLQELE F Q+P R RLA +N+TE VQ+WF+NRRAKW+
Sbjct: 136 PERKRRRRTAFTQFQLQELENFFDESQYPDVVARERLAARLNLTEDRVQVWFQNRRAKWK 195
Query: 191 RHQRALMARNMLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSSSLCFPM-PPF 249
R+QR LM RN TA A +F+ G Y+ + +LC + P
Sbjct: 196 RNQRVLMLRN-----------TATADLAHPLDMFLGGA---YYAAPALDPALCVHLVPQL 241
Query: 250 P-PPSLPLPLMLLPPMPP 266
P PP LP+P M PP PP
Sbjct: 242 PRPPVLPVPPM--PPRPP 257
Score = 28.9 bits (63), Expect = 5.5
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 245 PMPPFPP----PSLPLPLMLLPPMPPAGQAEFGPFPFVIVP 281
P+PP+PP P+ P P+ +PP PP + GP P VP
Sbjct: 302 PVPPWPPMAPVPTGP-PMAPVPPGPPMARVPPGP-PMARVP 340
>gi|23943886 Rhox homeobox family, member 1 [Homo sapiens]
Length = 184
Score = 80.9 bits (198), Expect = 1e-15
Identities = 51/134 (38%), Positives = 70/134 (52%), Gaps = 13/134 (9%)
Query: 82 GAGVPGHLWEGNLEGTSGSD-------GNVEDSDQSEKEPGQQYSRP-----QGAVGGLE 129
G G PG + N EG + G + + +EP QQ P Q A+ G +
Sbjct: 38 GQGAPGLMGNMNPEGGVNHENGMNRDGGMIPEGGGGNQEPRQQPQPPPEEPAQAAMEGPQ 97
Query: 130 PGNAQQPNVHA-FTPLQLQELECIFQREQFPSEFLRRRLARSMNVTELAVQIWFENRRAK 188
P N Q FT LQ++ELE +F+ Q+P RR LA ++ VTE V++WF+N+RA+
Sbjct: 98 PENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNKRAR 157
Query: 189 WRRHQRALMARNML 202
RRHQR LM N L
Sbjct: 158 CRRHQRELMLANEL 171
>gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens]
Length = 217
Score = 78.6 bits (192), Expect = 6e-15
Identities = 46/124 (37%), Positives = 67/124 (54%), Gaps = 22/124 (17%)
Query: 97 TSGSDGNVEDSDQSEKEPGQQYSRPQGAVGGLEPGNAQQPNVHAFTPLQLQELECIFQRE 156
TSGSD +D+DQ E ++ Q+ N F QLQ LE +F+R
Sbjct: 71 TSGSDTPQQDNDQLNSEEKKK--------------RKQRRNRTTFNSSQLQALERVFERT 116
Query: 157 QFPSEFLRRRLARSMNVTELAVQIWFENRRAKWRRHQRALMARNMLPFM--------AVG 208
+P F+R LAR +N+TE VQ+WF+NRRAK+RR++RA++A + AV
Sbjct: 117 HYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLANKNASLLKSYSGDVTAVE 176
Query: 209 QPVM 212
QP++
Sbjct: 177 QPIV 180
>gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo
sapiens]
Length = 245
Score = 78.6 bits (192), Expect = 6e-15
Identities = 46/124 (37%), Positives = 67/124 (54%), Gaps = 22/124 (17%)
Query: 97 TSGSDGNVEDSDQSEKEPGQQYSRPQGAVGGLEPGNAQQPNVHAFTPLQLQELECIFQRE 156
TSGSD +D+DQ E ++ Q+ N F QLQ LE +F+R
Sbjct: 71 TSGSDTPQQDNDQLNSEEKKK--------------RKQRRNRTTFNSSQLQALERVFERT 116
Query: 157 QFPSEFLRRRLARSMNVTELAVQIWFENRRAKWRRHQRALMARNMLPFM--------AVG 208
+P F+R LAR +N+TE VQ+WF+NRRAK+RR++RA++A + AV
Sbjct: 117 HYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLANKNASLLKSYSGDVTAVE 176
Query: 209 QPVM 212
QP++
Sbjct: 177 QPIV 180
>gi|7706659 paired related homeobox 2 [Homo sapiens]
Length = 253
Score = 78.2 bits (191), Expect = 8e-15
Identities = 61/203 (30%), Positives = 90/203 (44%), Gaps = 31/203 (15%)
Query: 51 EQGTAAGEKLKSAGAQGGEEKDGGGEEKDGGGAGVPGHLWEGNLEGTSGSDGNVEDSDQS 110
E+ AAG GA+ E ++G E GG +SGS+ +D +
Sbjct: 47 EEVAAAGRLAARPGARA-EAREGAAREPSGG---------------SSGSEAAPQDGECP 90
Query: 111 EKEPGQQYSRPQGAVGGLEPGNAQQPNVHAFTPLQLQELECIFQREQFPSEFLRRRLARS 170
G R + Q+ N F QLQ LE +F+R +P F+R LAR
Sbjct: 91 SPGRGSAAKRKK----------KQRRNRTTFNSSQLQALERVFERTHYPDAFVREELARR 140
Query: 171 MNVTELAVQIWFENRRAKWRRHQRALMARNMLPFMAVGQPVMVTAAEAITAPLFISGMRD 230
+N++E VQ+WF+NRRAK+RR++RA++A + A E AP + D
Sbjct: 141 VNLSEARVQVWFQNRRAKFRRNERAMLASRSASLLK--SYSQEAAIEQPVAPRPTALSPD 198
Query: 231 DYFWDHSHSSSLCFPMPPFPPPS 253
W +SS +PP+ P S
Sbjct: 199 YLSWT---ASSPYSTVPPYSPGS 218
>gi|189083681 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 75.5 bits (184), Expect = 5e-14
Identities = 56/210 (26%), Positives = 93/210 (44%), Gaps = 43/210 (20%)
Query: 68 GEEKDGGGEEKDGGGAGVPGHLWEGNLEGTSGSDGNVEDSDQSEKEPGQQYSRPQGAVGG 127
G+ G ++++GGG E T+ N EDSD+++
Sbjct: 170 GQPTQDGCQQQEGGG------------ENTNSISSNGEDSDEAQMR-------------- 203
Query: 128 LEPGNAQQPNVHAFTPLQLQELECIFQREQFPSEFLRRRLARSMNVTELAVQIWFENRRA 187
L+ Q N +FT Q++ LE F+R +P F R RLA +++ E +Q+WF NRRA
Sbjct: 204 LQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRA 263
Query: 188 KWRRHQRALMARNMLPFMAVGQPVMVTAAEAITAPL---------FISGM---RDDYFWD 235
KWRR ++ R P+ + + ++ P+ F SG R D
Sbjct: 264 KWRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALT 323
Query: 236 HSHSSSLCFPMPPFPPPSLPLPLMLLPPMP 265
+++S+ +PP P ++ L + PP+P
Sbjct: 324 NTYSA-----LPPMPSFTMANNLPMQPPVP 348
>gi|4580424 paired box gene 6 isoform b [Homo sapiens]
Length = 436
Score = 75.5 bits (184), Expect = 5e-14
Identities = 56/210 (26%), Positives = 93/210 (44%), Gaps = 43/210 (20%)
Query: 68 GEEKDGGGEEKDGGGAGVPGHLWEGNLEGTSGSDGNVEDSDQSEKEPGQQYSRPQGAVGG 127
G+ G ++++GGG E T+ N EDSD+++
Sbjct: 184 GQPTQDGCQQQEGGG------------ENTNSISSNGEDSDEAQMR-------------- 217
Query: 128 LEPGNAQQPNVHAFTPLQLQELECIFQREQFPSEFLRRRLARSMNVTELAVQIWFENRRA 187
L+ Q N +FT Q++ LE F+R +P F R RLA +++ E +Q+WF NRRA
Sbjct: 218 LQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRA 277
Query: 188 KWRRHQRALMARNMLPFMAVGQPVMVTAAEAITAPL---------FISGM---RDDYFWD 235
KWRR ++ R P+ + + ++ P+ F SG R D
Sbjct: 278 KWRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALT 337
Query: 236 HSHSSSLCFPMPPFPPPSLPLPLMLLPPMP 265
+++S+ +PP P ++ L + PP+P
Sbjct: 338 NTYSA-----LPPMPSFTMANNLPMQPPVP 362
>gi|4505615 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 75.5 bits (184), Expect = 5e-14
Identities = 56/210 (26%), Positives = 93/210 (44%), Gaps = 43/210 (20%)
Query: 68 GEEKDGGGEEKDGGGAGVPGHLWEGNLEGTSGSDGNVEDSDQSEKEPGQQYSRPQGAVGG 127
G+ G ++++GGG E T+ N EDSD+++
Sbjct: 170 GQPTQDGCQQQEGGG------------ENTNSISSNGEDSDEAQMR-------------- 203
Query: 128 LEPGNAQQPNVHAFTPLQLQELECIFQREQFPSEFLRRRLARSMNVTELAVQIWFENRRA 187
L+ Q N +FT Q++ LE F+R +P F R RLA +++ E +Q+WF NRRA
Sbjct: 204 LQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRA 263
Query: 188 KWRRHQRALMARNMLPFMAVGQPVMVTAAEAITAPL---------FISGM---RDDYFWD 235
KWRR ++ R P+ + + ++ P+ F SG R D
Sbjct: 264 KWRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALT 323
Query: 236 HSHSSSLCFPMPPFPPPSLPLPLMLLPPMP 265
+++S+ +PP P ++ L + PP+P
Sbjct: 324 NTYSA-----LPPMPSFTMANNLPMQPPVP 348
>gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]
Length = 331
Score = 71.2 bits (173), Expect = 1e-12
Identities = 63/205 (30%), Positives = 95/205 (46%), Gaps = 36/205 (17%)
Query: 25 LQDMNAMVL-SLTEEVKEEEE--------DAQP-----EPEQGTAAGEKLKSAGA---QG 67
++++ A V S ++VKE++E ++ P EP T AG +S+ A G
Sbjct: 1 MEELTAFVSKSFDQKVKEKKEAITYREVLESGPLRGAKEPTGCTEAGRDDRSSPAVRAAG 60
Query: 68 GEEKDGGGEEKDGGGAGVPGHLWEGNLEGTSGSDGNVEDSD----QSEKEPG-------- 115
G GGG GGG GV G G G G V + D + +EPG
Sbjct: 61 GGGGGGGGGGGGGGGGGVGGG---GAGGGAGGGRSPVRELDMGAAERSREPGSPRLTEVS 117
Query: 116 -QQYSRPQGAVGGLEPGNA---QQPNVHAFTPLQLQELECIFQREQFPSEFLRRRLARSM 171
+ R + A G + G Q+ + FT QL ELE +F +P F+R L++ +
Sbjct: 118 PELKDRKEDAKGMEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRL 177
Query: 172 NVTELAVQIWFENRRAKWRRHQRAL 196
++E VQ+WF+NRRAK R+ + L
Sbjct: 178 GLSEARVQVWFQNRRAKCRKQENQL 202
>gi|14249388 retina and anterior neural fold homeobox 2 [Homo
sapiens]
Length = 184
Score = 71.2 bits (173), Expect = 1e-12
Identities = 52/167 (31%), Positives = 77/167 (46%), Gaps = 34/167 (20%)
Query: 126 GGLEPGNAQQPNVH-----AFTPLQLQELECIFQREQFPSEFLRRRLARSMNVTELAVQI 180
GGL PG H FT QL +LE F+ +P + R LA +++ E+ VQ+
Sbjct: 14 GGLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQV 73
Query: 181 WFENRRAKWRRHQRALMARNMLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSS 240
WF+NRRAKWRR +R + + + A+ AP + +
Sbjct: 74 WFQNRRAKWRRQER-----------------LESGSGAVAAPRLPEAPALPF----ARPP 112
Query: 241 SLCFPMPPF---PPPSLP-LPLMLLPPMPPAGQAEFGPFPFVIVPSF 283
++ P+ P+ PP++P LP +L P P QA FGP F P+F
Sbjct: 113 AMSLPLEPWLGPGPPAVPGLPRLLGP--GPGLQASFGPHAF--APTF 155
>gi|152963644 paired-like homeodomain transcription factor 1 [Homo
sapiens]
Length = 314
Score = 70.5 bits (171), Expect = 2e-12
Identities = 42/110 (38%), Positives = 57/110 (51%), Gaps = 11/110 (10%)
Query: 95 EGTSGSDGNVEDSDQSEKEPGQQYSRPQGA-VGGLEPGNAQQP---------NVHAFTPL 144
E S D++ EKE G + P+ + GG G A P H FT
Sbjct: 41 EPLENSASESSDTELPEKERGGEPKGPEDSGAGGTGCGGADDPAKKKKQRRQRTH-FTSQ 99
Query: 145 QLQELECIFQREQFPSEFLRRRLARSMNVTELAVQIWFENRRAKWRRHQR 194
QLQELE FQR ++P +R +A N+TE V++WF+NRRAKWR+ +R
Sbjct: 100 QLQELEATFQRNRYPDMSMREEIAVWTNLTEPRVRVWFKNRRAKWRKRER 149
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 70.5 bits (171), Expect = 2e-12
Identities = 52/177 (29%), Positives = 76/177 (42%), Gaps = 22/177 (12%)
Query: 112 KEPGQQYSRPQGAVGGL----------EPGNAQQPNVHAFTPLQLQELECIFQREQFPSE 161
KEPG+ P VG +P + N FT QL ELE F++ +P
Sbjct: 104 KEPGEARPSPGLPVGPATGEAKLSEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDV 163
Query: 162 FLRRRLARSMNVTELAVQIWFENRRAKWRRHQRALMARNML---PFMAVGQ-PVMVTAAE 217
+ R LA +N+ E+ VQ+WF+NRRAKWRR ++ ++ L P ++ + P T +
Sbjct: 164 YSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKLEVSSMKLQDSPLLSFSRSPPSATLSP 223
Query: 218 AITAPLFISGMRDDYFWDHS--------HSSSLCFPMPPFPPPSLPLPLMLLPPMPP 266
P G S ++ +P F PP+ LP PP PP
Sbjct: 224 LGAGPGSGGGPAGGALPLESWLGPPLPGGGATALQSLPGFGPPAQSLPASYTPPPPP 280
>gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens]
Length = 325
Score = 70.1 bits (170), Expect = 2e-12
Identities = 47/145 (32%), Positives = 69/145 (47%), Gaps = 8/145 (5%)
Query: 111 EKEPGQQYSRPQGAVGGLEPGNAQQPNVHA-FTPLQLQELECIFQREQFPSEFLRRRLAR 169
+K+PG Q P + G + G +Q FTP QL ELE F + +P F+R LA
Sbjct: 81 DKQPGPQ-GGPNPSQAGQQQGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELAL 139
Query: 170 SMNVTELAVQIWFENRRAKWRRHQRAL----MARNMLPFMAVGQ-PVMVTAAEAITAPLF 224
+ +TE VQ+WF+NRRAKW++ ++ +LP + Q P AA A
Sbjct: 140 RIGLTESRVQVWFQNRRAKWKKRKKTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDSL 199
Query: 225 ISGMRDDYFWDHSHSSSLC-FPMPP 248
S +D W + + P+PP
Sbjct: 200 CSFHANDTRWAAAAMPGVSQLPLPP 224
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 70.1 bits (170), Expect = 2e-12
Identities = 51/154 (33%), Positives = 74/154 (48%), Gaps = 17/154 (11%)
Query: 141 FTPLQLQELECIFQREQFPSEFLRRRLARSMNVTELAVQIWFENRRAKWRRHQRALMARN 200
FT QL+ELE FQ+ +P F R LA +++TE VQ+WF+NRRAKWR+ ++A +
Sbjct: 335 FTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREKAGAQTH 394
Query: 201 M--LPFMAVGQPVMVTAAEAITAPLFISGM------RDDYFWDHSHSSSLCFPMPPFPPP 252
LPF P ++A ++ L S D + + +++ FP P PP
Sbjct: 395 PPGLPF-----PGPLSATHPLSPYLDASPFPPHHPALDSAWTAAAAAAAAAFPSLPPPPG 449
Query: 253 SLPLPLMLLPPMPPAGQAEFGPFPFVIVPSFTFP 286
S LP P P G + F P+F P
Sbjct: 450 SASLP----PSGAPLGLSTFLGAAVFRHPAFISP 479
>gi|46249382 paired-like homeobox 2a [Homo sapiens]
Length = 284
Score = 70.1 bits (170), Expect = 2e-12
Identities = 53/157 (33%), Positives = 71/157 (45%), Gaps = 24/157 (15%)
Query: 127 GLEPGNAQQPNVHAFTPLQLQELECIFQREQFPSEFLRRRLARSMNVTELAVQIWFENRR 186
GL Q+ FT QL+ELE +F +P + R LA +++TE VQ+WF+NRR
Sbjct: 83 GLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRR 142
Query: 187 AKWRRHQRALMARNMLPFMAVGQPVMVTAAEAITAPLFISGMRDDYFWDHSHSSSLCFP- 245
AK+R+ +RA A+ A G AA A S DD S C P
Sbjct: 143 AKFRKQERAASAKG-----AAG------AAGAKKGEARCSSEDDD------SKESTCSPT 185
Query: 246 ------MPPFPPPSLPLPLMLLPPMPPAGQAEFGPFP 276
+PP P P L P + P+P A + GP P
Sbjct: 186 PDSTASLPPPPAPGLASPRLSPSPLPVALGSGPGPGP 222
>gi|14149760 orthopedia homeobox [Homo sapiens]
Length = 325
Score = 70.1 bits (170), Expect = 2e-12
Identities = 47/145 (32%), Positives = 69/145 (47%), Gaps = 8/145 (5%)
Query: 111 EKEPGQQYSRPQGAVGGLEPGNAQQPNVHA-FTPLQLQELECIFQREQFPSEFLRRRLAR 169
+K+PG Q P + G + G +Q FTP QL ELE F + +P F+R LA
Sbjct: 81 DKQPGPQ-GGPNPSQAGQQQGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELAL 139
Query: 170 SMNVTELAVQIWFENRRAKWRRHQRAL----MARNMLPFMAVGQ-PVMVTAAEAITAPLF 224
+ +TE VQ+WF+NRRAKW++ ++ +LP + Q P AA A
Sbjct: 140 RIGLTESRVQVWFQNRRAKWKKRKKTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDSL 199
Query: 225 ISGMRDDYFWDHSHSSSLC-FPMPP 248
S +D W + + P+PP
Sbjct: 200 CSFHANDTRWAAAAMPGVSQLPLPP 224
>gi|239757894 PREDICTED: similar to Rhox homeobox family, member 1
[Homo sapiens]
Length = 177
Score = 68.9 bits (167), Expect = 5e-12
Identities = 36/77 (46%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 127 GLEPGNAQQPNVHA-FTPLQLQELECIFQREQFPSEFLRRRLARSMNVTELAVQIWFENR 185
G +P N Q FT LQ++ELE +F+ Q+P RR LA ++ VTE V++WF+N+
Sbjct: 3 GPQPENMQPRTRRTKFTLLQVEELESVFRHTQYPDVPTRRELAENLGVTEDKVRVWFKNK 62
Query: 186 RAKWRRHQRALMARNML 202
RA+ RRHQR LM N L
Sbjct: 63 RARCRRHQRELMLANEL 79
>gi|55743092 aristaless-like homeobox 4 [Homo sapiens]
Length = 411
Score = 68.6 bits (166), Expect = 6e-12
Identities = 45/148 (30%), Positives = 69/148 (46%), Gaps = 16/148 (10%)
Query: 137 NVHAFTPLQLQELECIFQREQFPSEFLRRRLARSMNVTELAVQIWFENRRAKWRRHQR-A 195
N FT QL+ELE +FQ+ +P + R +LA ++TE VQ+WF+NRRAKWR+ +R
Sbjct: 217 NRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFG 276
Query: 196 LMARNMLPFMAVGQPVMVTAAE---AITAPLFISGMRDDYFWDHSHSSSLCFPMPPFPPP 252
M + F + ++T AE I P ++ ++ P+P P
Sbjct: 277 QMQQVRTHFSTAYELPLLTRAENYAQIQNPSWLG------------NNGAASPVPACVVP 324
Query: 253 SLPLPLMLLPPMPPAGQAEFGPFPFVIV 280
P+P + P P G F+ V
Sbjct: 325 CDPVPACMSPHAHPPGSGASSVTDFLSV 352
>gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens]
Length = 326
Score = 67.4 bits (163), Expect = 1e-11
Identities = 28/54 (51%), Positives = 40/54 (74%)
Query: 141 FTPLQLQELECIFQREQFPSEFLRRRLARSMNVTELAVQIWFENRRAKWRRHQR 194
FT LQL+ELE +FQ+ +P ++R +LA +TE VQ+WF+NRRAKWR+ +R
Sbjct: 139 FTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRER 192
>gi|169881277 PROP paired-like homeobox 1 [Homo sapiens]
Length = 226
Score = 67.0 bits (162), Expect = 2e-11
Identities = 52/176 (29%), Positives = 78/176 (44%), Gaps = 38/176 (21%)
Query: 120 RPQGAVGG---LEPGNAQQPNVHA-------FTPLQLQELECIFQREQFPSEFLRRRLAR 169
R GA GG P Q+ H+ F+P+QL++LE F R Q+P + R LAR
Sbjct: 45 RLPGAGGGRSRFSPQGGQRGRPHSRRRHRTTFSPVQLEQLESAFGRNQYPDIWARESLAR 104
Query: 170 SMNVTELAVQIWFENRRAKWRRHQRALM----------------ARNMLPFMAVGQPVMV 213
++E +Q+WF+NRRAK R+ +R+L+ P+ P V
Sbjct: 105 DTGLSEARIQVWFQNRRAKQRKQERSLLQPLAHLSPAAFSSFLPESTACPYSYAAPPPPV 164
Query: 214 TA----------AEAITAPLF-ISGMRDDYFWDHSHSSSLCFPMPPFPPPSLPLPL 258
T ++ T F +S +D++ + + P PP PPP LPL L
Sbjct: 165 TCFPHPYSHALPSQPSTGGAFALSHQSEDWYPTLHPAPAGHLPCPP-PPPMLPLSL 219
>gi|4826912 paired-like homeodomain 3 [Homo sapiens]
Length = 302
Score = 66.6 bits (161), Expect = 2e-11
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 8/92 (8%)
Query: 115 GQQYSRPQGAVGGLEPGNAQQPNVHA--------FTPLQLQELECIFQREQFPSEFLRRR 166
GQ++S + A L G+ + ++ FT QLQELE FQR ++P R
Sbjct: 35 GQEHSDSEKASASLPGGSPEDGSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREE 94
Query: 167 LARSMNVTELAVQIWFENRRAKWRRHQRALMA 198
+A N+TE V++WF+NRRAKWR+ +R+ A
Sbjct: 95 IAVWTNLTEARVRVWFKNRRAKWRKRERSQQA 126
>gi|21361183 paired-like homeodomain transcription factor 2 isoform
c [Homo sapiens]
Length = 324
Score = 66.6 bits (161), Expect = 2e-11
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
Query: 107 SDQSEKEPGQQYSRPQGA---VGGLEPGNAQQPNVHA--FTPLQLQELECIFQREQFPSE 161
SD S E ++ QG VG +P ++ FT QLQELE FQR ++P
Sbjct: 60 SDTSSPEAAEKDKSQQGKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDM 119
Query: 162 FLRRRLARSMNVTELAVQIWFENRRAKWRRHQR 194
R +A N+TE V++WF+NRRAKWR+ +R
Sbjct: 120 STREEIAVWTNLTEARVRVWFKNRRAKWRKRER 152
>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
Length = 520
Score = 66.6 bits (161), Expect = 2e-11
Identities = 48/152 (31%), Positives = 73/152 (48%), Gaps = 22/152 (14%)
Query: 67 GGEEKDGGGEEKDGGGAGVPGHLWEGNLEGTSGSDGN-VEDSDQSEKEPGQQYSRPQGAV 125
G +E++ ++K+ G H +++G G GN +++ E EP R Q
Sbjct: 165 GKKEEEDEADKKEDDGEKKAKH----SIDGILGDKGNRLDEGSDVESEPDLPLKRKQ--- 217
Query: 126 GGLEPGNAQQPNVHAFTPLQLQELECIFQREQFPSEFLRRRLARSMNVTELAVQIWFENR 185
+ + FT QL+ELE F+R +P + R LA+ +TE VQ+WF NR
Sbjct: 218 ---------RRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNR 268
Query: 186 RAKWRRHQRA--LMARN-MLP--FMAVGQPVM 212
RA+WR+ A L A N +LP F G P +
Sbjct: 269 RARWRKQAGANQLAAFNHLLPGGFPPTGMPTL 300
>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
Length = 518
Score = 66.6 bits (161), Expect = 2e-11
Identities = 48/152 (31%), Positives = 73/152 (48%), Gaps = 22/152 (14%)
Query: 67 GGEEKDGGGEEKDGGGAGVPGHLWEGNLEGTSGSDGN-VEDSDQSEKEPGQQYSRPQGAV 125
G +E++ ++K+ G H +++G G GN +++ E EP R Q
Sbjct: 163 GKKEEEDEADKKEDDGEKKAKH----SIDGILGDKGNRLDEGSDVESEPDLPLKRKQ--- 215
Query: 126 GGLEPGNAQQPNVHAFTPLQLQELECIFQREQFPSEFLRRRLARSMNVTELAVQIWFENR 185
+ + FT QL+ELE F+R +P + R LA+ +TE VQ+WF NR
Sbjct: 216 ---------RRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNR 266
Query: 186 RAKWRRHQRA--LMARN-MLP--FMAVGQPVM 212
RA+WR+ A L A N +LP F G P +
Sbjct: 267 RARWRKQAGANQLAAFNHLLPGGFPPTGMPTL 298
>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
Length = 505
Score = 66.6 bits (161), Expect = 2e-11
Identities = 48/152 (31%), Positives = 73/152 (48%), Gaps = 22/152 (14%)
Query: 67 GGEEKDGGGEEKDGGGAGVPGHLWEGNLEGTSGSDGN-VEDSDQSEKEPGQQYSRPQGAV 125
G +E++ ++K+ G H +++G G GN +++ E EP R Q
Sbjct: 165 GKKEEEDEADKKEDDGEKKAKH----SIDGILGDKGNRLDEGSDVESEPDLPLKRKQ--- 217
Query: 126 GGLEPGNAQQPNVHAFTPLQLQELECIFQREQFPSEFLRRRLARSMNVTELAVQIWFENR 185
+ + FT QL+ELE F+R +P + R LA+ +TE VQ+WF NR
Sbjct: 218 ---------RRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNR 268
Query: 186 RAKWRRHQRA--LMARN-MLP--FMAVGQPVM 212
RA+WR+ A L A N +LP F G P +
Sbjct: 269 RARWRKQAGANQLAAFNHLLPGGFPPTGMPTL 300
>gi|24234711 paired-like homeodomain transcription factor 2 isoform
a [Homo sapiens]
Length = 271
Score = 65.5 bits (158), Expect = 5e-11
Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 4/88 (4%)
Query: 109 QSEKEPGQQYSRPQGAVGGLEPGNAQQPNVHA--FTPLQLQELECIFQREQFPSEFLRRR 166
Q EK+ QQ VG +P ++ FT QLQELE FQR ++P R
Sbjct: 14 QLEKDKSQQGKNED--VGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREE 71
Query: 167 LARSMNVTELAVQIWFENRRAKWRRHQR 194
+A N+TE V++WF+NRRAKWR+ +R
Sbjct: 72 IAVWTNLTEARVRVWFKNRRAKWRKRER 99
>gi|7110735 ventral anterior homeobox 2 [Homo sapiens]
Length = 290
Score = 65.5 bits (158), Expect = 5e-11
Identities = 74/281 (26%), Positives = 113/281 (40%), Gaps = 55/281 (19%)
Query: 45 DAQPEPEQGTAAGEKLKSAGAQGGEEKDGGGEEKDGGGAGVPGHLWEGNLEGTSGSD--G 102
D E ++G A + G + G+ G DGGG + GTS S G
Sbjct: 3 DGGAERDRGPARRAESGGGGGRCGDRSGAGDLRADGGGHSPT------EVAGTSASSPAG 56
Query: 103 NVEDSDQSEKEPGQQYSR---------PQGAVG------GLEPGNAQQPNVHAFTPLQLQ 147
+ E S+ +PG + +G + GL+ ++ +FT QL
Sbjct: 57 SRESGADSDGQPGPGEADHCRRILVRDAKGTIREIVLPKGLDLDRPKRTRT-SFTAEQLY 115
Query: 148 ELECIFQREQFPSEFLRRRLARSMNVTELAVQIWFENRRAKWRRHQ-------------R 194
LE FQR Q+ R LAR +N++E V++WF+NRR K ++ Q
Sbjct: 116 RLEMEFQRCQYVVGRERTELARQLNLSETQVKVWFQNRRTKQKKDQSRDLEKRASSSASE 175
Query: 195 ALMARNMLPFMAVGQPVMVTAAEAITA-----PLFISGMRDDYFWDHSHSSSLCFPM--- 246
A N+L + G+ + V A ++ A P + R D +SS P+
Sbjct: 176 AFATSNILRLLEQGRLLSVPRAPSLLALTPSLPGLPASHRGTSLGDPRNSSPRLNPLSSA 235
Query: 247 ---PPFPPPSLP------LPLMLLPPMPPAGQAEFGPFPFV 278
PP PPP LP PL+ LP G + F P+ ++
Sbjct: 236 SASPPLPPP-LPAVCFSSAPLLDLPAGYELGSSAFEPYSWL 275
>gi|4885363 goosecoid homeobox 2 [Homo sapiens]
Length = 205
Score = 65.5 bits (158), Expect = 5e-11
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 123 GAVGGLEPGNAQQPNVHA--FTPLQLQELECIFQREQFPSEFLRRRLARSMNVTELAVQI 180
GAVG PG+ ++ H F+ QLQ LE +F + Q+P R RLA + + E V++
Sbjct: 116 GAVG---PGSQRRTRRHRTIFSEEQLQALEALFVQNQYPDVSTRERLAGRIRLREERVEV 172
Query: 181 WFENRRAKWRRHQRALMARNMLP 203
WF+NRRAKWR +RA + +LP
Sbjct: 173 WFKNRRAKWRHQKRASASARLLP 195
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.134 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,666,361
Number of Sequences: 37866
Number of extensions: 885728
Number of successful extensions: 10284
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 417
Number of HSP's that attempted gapping in prelim test: 6922
Number of HSP's gapped (non-prelim): 3049
length of query: 288
length of database: 18,247,518
effective HSP length: 101
effective length of query: 187
effective length of database: 14,423,052
effective search space: 2697110724
effective search space used: 2697110724
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.