PRRX1 2905

Name: PRRX1	Sequence: fasta or formatted (245aa)		NCBI GI: 12707577
Description: paired mesoderm homeobox 1 isoform pmx-1b		Referenced in: Homeobox and Related Proteins HOX Genes
Other entries for this name: alt prot [217aa] paired mesoderm homeobox 1 isoform pmx-1a
Composition: Amino acid Percentage Count Longest homopolymer A alanine 10.6 26 2 C cysteine 0.4 1 1 D aspartate 4.9 12 1 E glutamate 6.1 15 2 F phenylalanine 2.4 6 1 G glycine 4.9 12 2 H histidine 1.2 3 1 I isoleucine 1.2 3 1 K lysine 4.5 11 3 L leucine 9.4 23 2 M methionine 2.0 5 1 N asparagine 7.8 19 2 P proline 5.3 13 1 Q glutamine 6.1 15 2 R arginine 9.0 22 2 S serine 9.0 22 2 T threonine 5.7 14 2 V valine 5.7 14 1 W tryptophan 0.8 2 1 Y tyrosine 2.9 7 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 paired mesoderm homeobox 1 isoform pmx-1b PRRX1 0.807 paired mesoderm homeobox 1 isoform pmx-1a PRRX2 0.510 paired related homeobox 2 PAX6 0.180 paired box gene 6 isoform a PAX6 0.180 paired box gene 6 isoform b PAX6 0.180 paired box gene 6 isoform a RAX 0.174 retina and anterior neural fold homeobox PHOX2A 0.171 paired-like homeobox 2a PHOX2B 0.169 paired-like homeobox 2b PAX3 0.169 paired box 3 isoform PAX3i PAX3 0.169 paired box 3 isoform PAX3g PAX3 0.169 paired box 3 isoform PAX3h PAX3 0.169 paired box 3 isoform PAX3e PAX3 0.169 paired box 3 isoform PAX3d PAX3 0.169 paired box 3 isoform PAX3 ARX 0.169 aristaless related homeobox DRGX 0.167 dorsal root ganglia homeobox ALX4 0.167 aristaless-like homeobox 4 RAX2 0.163 retina and anterior neural fold homeobox 2 PAX7 0.161 paired box 7 isoform 1 PAX7 0.161 paired box 7 isoform 2 PAX7 0.161 paired box 7 isoform 3 ALX3 0.161 aristaless-like homeobox 3 SHOX2 0.154 short stature homeobox 2 isoform a ALX1 0.154 cartilage paired-class homeoprotein 1 SHOX 0.152 short stature homeobox isoform SHOXb SHOX 0.152 short stature homeobox isoform SHOXa PITX2 0.150 paired-like homeodomain transcription factor 2 isofo... SHOX2 0.150 short stature homeobox 2 isoform b PITX2 0.145 paired-like homeodomain transcription factor 2 isofo... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.