PRRX1 33733

Name: PRRX1	Sequence: fasta or formatted (217aa)		NCBI GI: 5902024
Description: paired mesoderm homeobox 1 isoform pmx-1a		Referenced in: Homeobox and Related Proteins HOX Genes
Other entries for this name: alt prot [245aa] paired mesoderm homeobox 1 isoform pmx-1b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.3 18 2 C cysteine 0.9 2 2 D aspartate 5.5 12 1 E glutamate 6.9 15 2 F phenylalanine 3.2 7 1 G glycine 6.0 13 2 H histidine 2.3 5 1 I isoleucine 0.5 1 1 K lysine 4.1 9 3 L leucine 10.6 23 2 M methionine 1.4 3 1 N asparagine 6.0 13 1 P proline 5.5 12 1 Q glutamine 5.5 12 2 R arginine 10.1 22 2 S serine 9.2 20 3 T threonine 5.1 11 2 V valine 5.5 12 1 W tryptophan 0.9 2 1 Y tyrosine 2.3 5 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 paired mesoderm homeobox 1 isoform pmx-1a PRRX1 0.903 paired mesoderm homeobox 1 isoform pmx-1b PRRX2 0.461 paired related homeobox 2 RAX 0.194 retina and anterior neural fold homeobox PAX3 0.192 paired box 3 isoform PAX3i PAX3 0.192 paired box 3 isoform PAX3g PAX3 0.192 paired box 3 isoform PAX3h PAX3 0.192 paired box 3 isoform PAX3e PAX3 0.192 paired box 3 isoform PAX3d PAX3 0.192 paired box 3 isoform PAX3 PAX6 0.192 paired box gene 6 isoform a PAX6 0.192 paired box gene 6 isoform b PAX6 0.192 paired box gene 6 isoform a PHOX2A 0.192 paired-like homeobox 2a PAX7 0.189 paired box 7 isoform 1 PAX7 0.189 paired box 7 isoform 2 PAX7 0.189 paired box 7 isoform 3 PHOX2B 0.189 paired-like homeobox 2b ARX 0.189 aristaless related homeobox DRGX 0.187 dorsal root ganglia homeobox ALX4 0.184 aristaless-like homeobox 4 RAX2 0.184 retina and anterior neural fold homeobox 2 ALX3 0.180 aristaless-like homeobox 3 SHOX2 0.172 short stature homeobox 2 isoform a ALX1 0.172 cartilage paired-class homeoprotein 1 SHOX 0.170 short stature homeobox isoform SHOXb SHOX 0.170 short stature homeobox isoform SHOXa PITX2 0.167 paired-like homeodomain transcription factor 2 isofo... SHOX2 0.167 short stature homeobox 2 isoform b PITX2 0.163 paired-like homeodomain transcription factor 2 isofo... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.