Guide to the Human Genome
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Name: PAX7 Sequence: fasta or formatted (520aa) NCBI GI: 4505619
Description:

paired box 7 isoform 1

Referenced in:

Homeobox and Related Proteins

Other entries for this name:
alt prot [505aa] paired box 7 isoform 3
alt prot [518aa] paired box 7 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         37           7
 C cysteine            1.5          8           1
 D aspartate           4.4         23           2
 E glutamate           5.6         29           3
 F phenylalanine       2.7         14           1
 G glycine             8.3         43           2
 H histidine           2.7         14           2
 I isoleucine          4.2         22           1
 K lysine              4.8         25           2
 L leucine             6.5         34           2
 M methionine          2.7         14           2
 N asparagine          2.7         14           1
 P proline             9.6         50           2
 Q glutamine           5.2         27           1
 R arginine            6.7         35           2
 S serine             10.6         55           2
 T threonine           5.6         29           3
 V valine              5.0         26           2
 W tryptophan          1.0          5           1
 Y tyrosine            3.1         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   paired box 7 isoform 1 
PAX7                  0.991   paired box 7 isoform 2 
PAX7                  0.895   paired box 7 isoform 3 
PAX3                  0.689   paired box 3 isoform PAX3 
PAX3                  0.687   paired box 3 isoform PAX3e 
PAX3                  0.687   paired box 3 isoform PAX3d 
PAX3                  0.680   paired box 3 isoform PAX3i 
PAX3                  0.572   paired box 3 isoform PAX3g 
PAX3                  0.572   paired box 3 isoform PAX3h 
PAX3                  0.305   paired box 3 isoform PAX3b 
PAX3                  0.305   paired box 3 isoform PAX3a 
PAX6                  0.223   paired box gene 6 isoform a 
PAX6                  0.223   paired box gene 6 isoform a 
PAX6                  0.213   paired box gene 6 isoform b 
PAX5                  0.186   paired box 5 
PAX2                  0.181   paired box protein 2 isoform d 
PAX2                  0.181   paired box protein 2 isoform b 
PAX2                  0.181   paired box protein 2 isoform c 
PAX8                  0.174   paired box 8 isoform PAX8B 
PAX2                  0.172   paired box protein 2 isoform a 
PAX2                  0.172   paired box protein 2 isoform e 
PAX8                  0.169   paired box 8 isoform PAX8C 
PAX8                  0.168   paired box 8 isoform PAX8D 
PAX8                  0.168   paired box 8 isoform PAX8E 
PAX8                  0.168   paired box 8 isoform PAX8A 
PAX1                  0.157   paired box 1 
PAX9                  0.155   paired box 9 
PAX4                  0.155   paired box 4 
ARX                   0.085   aristaless related homeobox 
ALX3                  0.084   aristaless-like homeobox 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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