Guide to the Human Genome
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Name: SLC39A8 Sequence: fasta or formatted (460aa) NCBI GI: 24586665
Description:

solute carrier family 39 (zinc transporter), member 8 isoform a

Referenced in:

Solute Carrier Families

Other entries for this name:
alt mRNA [460aa] solute carrier family 39 (zinc transporter), member 8 isoform a
alt prot [444aa] solute carrier family 39 (zinc transporter), member 8 isoform b
alt prot [393aa] solute carrier family 39 (zinc transporter), member 8 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         43           3
 C cysteine            2.4         11           1
 D aspartate           2.8         13           1
 E glutamate           5.0         23           2
 F phenylalanine       8.0         37           3
 G glycine             9.3         43           2
 H histidine           2.8         13           1
 I isoleucine          6.3         29           2
 K lysine              3.9         18           2
 L leucine            13.5         62           4
 M methionine          2.6         12           1
 N asparagine          4.6         21           2
 P proline             4.6         21           1
 Q glutamine           3.5         16           2
 R arginine            1.7          8           1
 S serine              6.5         30           2
 T threonine           5.4         25           1
 V valine              5.2         24           2
 W tryptophan          0.4          2           1
 Y tyrosine            2.0          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 39 (zinc transporter), member ... 
SLC39A8               1.000   solute carrier family 39 (zinc transporter), member...
SLC39A8               0.922   solute carrier family 39 (zinc transporter), member...
SLC39A8               0.848   solute carrier family 39 (zinc transporter), member...
SLC39A14              0.441   solute carrier family 39 (zinc transporter), member...
SLC39A14              0.435   solute carrier family 39 (zinc transporter), member...
SLC39A14              0.435   solute carrier family 39 (zinc transporter), member...
SLC39A14              0.390   solute carrier family 39 (zinc transporter), member...
SLC39A4               0.180   solute carrier family 39 (zinc transporter), member...
SLC39A4               0.180   solute carrier family 39 (zinc transporter), member...
SLC39A12              0.174   solute carrier family 39 (zinc transporter), member...
SLC39A12              0.165   solute carrier family 39 (zinc transporter), member...
SLC39A6               0.145   solute carrier family 39 (zinc transporter), member...
SLC39A10              0.140   solute carrier family 39 (zinc transporter), member...
SLC39A10              0.140   solute carrier family 39 (zinc transporter), member ...
SLC39A5               0.129   solute carrier family 39 (metal ion transporter), m...
SLC39A5               0.129   solute carrier family 39 (metal ion transporter), m...
SLC39A6               0.119   solute carrier family 39 (zinc transporter), member...
SLC39A7               0.067   solute carrier family 39, member 7 
SLC39A7               0.067   solute carrier family 39, member 7 
SLC39A13              0.055   solute carrier family 39 (zinc transporter), member ...
SLC39A13              0.052   solute carrier family 39 (zinc transporter), member...
SLC39A2               0.020   solute carrier family 39 (zinc transporter), member...
SLC39A11              0.019   solute carrier family 39, member 11 isoform 1 [Homo...
SLC39A11              0.019   solute carrier family 39, member 11 isoform 2 [Homo...
SLC39A9               0.009   solute carrier family 39 (zinc transporter), member ...
SLC39A1               0.009   solute carrier family 39 (zinc transporter), member ...
LOC100130667          0.007   PREDICTED: hypothetical protein 
LOC100130667          0.007   PREDICTED: hypothetical protein 
LOC100130667          0.007   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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