Guide to the Human Genome
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Name: SLC39A8 Sequence: fasta or formatted (393aa) NCBI GI: 205830407
Description:

solute carrier family 39 (zinc transporter), member 8 isoform c

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [460aa] solute carrier family 39 (zinc transporter), member 8 isoform a
alt prot [444aa] solute carrier family 39 (zinc transporter), member 8 isoform b
alt prot [460aa] solute carrier family 39 (zinc transporter), member 8 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         31           1
 C cysteine            2.8         11           1
 D aspartate           3.1         12           1
 E glutamate           4.8         19           2
 F phenylalanine       8.7         34           3
 G glycine             8.1         32           2
 H histidine           3.3         13           1
 I isoleucine          7.4         29           2
 K lysine              4.6         18           2
 L leucine            12.5         49           2
 M methionine          2.8         11           1
 N asparagine          4.8         19           2
 P proline             4.3         17           1
 Q glutamine           3.3         13           2
 R arginine            1.5          6           1
 S serine              6.4         25           2
 T threonine           6.4         25           1
 V valine              4.6         18           2
 W tryptophan          0.5          2           1
 Y tyrosine            2.3          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 39 (zinc transporter), member... 
SLC39A8               0.986   solute carrier family 39 (zinc transporter), member ...
SLC39A8               0.986   solute carrier family 39 (zinc transporter), member...
SLC39A8               0.895   solute carrier family 39 (zinc transporter), member...
SLC39A14              0.498   solute carrier family 39 (zinc transporter), member...
SLC39A14              0.492   solute carrier family 39 (zinc transporter), member...
SLC39A14              0.492   solute carrier family 39 (zinc transporter), member...
SLC39A14              0.438   solute carrier family 39 (zinc transporter), member...
SLC39A4               0.206   solute carrier family 39 (zinc transporter), member...
SLC39A4               0.206   solute carrier family 39 (zinc transporter), member...
SLC39A12              0.201   solute carrier family 39 (zinc transporter), member...
SLC39A12              0.191   solute carrier family 39 (zinc transporter), member...
SLC39A6               0.169   solute carrier family 39 (zinc transporter), member...
SLC39A10              0.162   solute carrier family 39 (zinc transporter), member...
SLC39A10              0.162   solute carrier family 39 (zinc transporter), member ...
SLC39A5               0.152   solute carrier family 39 (metal ion transporter), m...
SLC39A5               0.152   solute carrier family 39 (metal ion transporter), m...
SLC39A6               0.139   solute carrier family 39 (zinc transporter), member...
SLC39A7               0.078   solute carrier family 39, member 7 
SLC39A7               0.078   solute carrier family 39, member 7 
SLC39A13              0.064   solute carrier family 39 (zinc transporter), member ...
SLC39A13              0.061   solute carrier family 39 (zinc transporter), member...
SLC39A2               0.023   solute carrier family 39 (zinc transporter), member...
SLC39A11              0.022   solute carrier family 39, member 11 isoform 1 [Homo...
SLC39A11              0.022   solute carrier family 39, member 11 isoform 2 [Homo...
SLC39A9               0.010   solute carrier family 39 (zinc transporter), member ...
SLC39A1               0.010   solute carrier family 39 (zinc transporter), member ...
SLC45A4               0.006   solute carrier family 45, member 4 
ABCA5                 0.006   ATP-binding cassette, sub-family A , member 5 
ABCA5                 0.006   ATP-binding cassette, sub-family A , member 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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