Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SLC39A8 Sequence: fasta or formatted (444aa) NCBI GI: 205830405
Description:

solute carrier family 39 (zinc transporter), member 8 isoform b

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [460aa] solute carrier family 39 (zinc transporter), member 8 isoform a
alt prot [393aa] solute carrier family 39 (zinc transporter), member 8 isoform c
alt prot [460aa] solute carrier family 39 (zinc transporter), member 8 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         42           3
 C cysteine            2.5         11           1
 D aspartate           3.2         14           2
 E glutamate           4.5         20           2
 F phenylalanine       7.4         33           3
 G glycine             8.8         39           2
 H histidine           3.2         14           1
 I isoleucine          6.5         29           2
 K lysine              4.3         19           2
 L leucine            13.5         60           4
 M methionine          2.3         10           1
 N asparagine          4.5         20           2
 P proline             4.7         21           1
 Q glutamine           3.6         16           2
 R arginine            1.8          8           1
 S serine              7.0         31           2
 T threonine           4.7         21           1
 V valine              5.2         23           2
 W tryptophan          0.9          4           1
 Y tyrosine            2.0          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 39 (zinc transporter), member... 
SLC39A8               0.951   solute carrier family 39 (zinc transporter), member ...
SLC39A8               0.951   solute carrier family 39 (zinc transporter), member...
SLC39A8               0.794   solute carrier family 39 (zinc transporter), member...
SLC39A14              0.425   solute carrier family 39 (zinc transporter), member...
SLC39A14              0.419   solute carrier family 39 (zinc transporter), member...
SLC39A14              0.419   solute carrier family 39 (zinc transporter), member...
SLC39A14              0.402   solute carrier family 39 (zinc transporter), member...
SLC39A4               0.167   solute carrier family 39 (zinc transporter), member...
SLC39A4               0.167   solute carrier family 39 (zinc transporter), member...
SLC39A12              0.161   solute carrier family 39 (zinc transporter), member...
SLC39A12              0.152   solute carrier family 39 (zinc transporter), member...
SLC39A6               0.131   solute carrier family 39 (zinc transporter), member...
SLC39A5               0.131   solute carrier family 39 (metal ion transporter), m...
SLC39A5               0.131   solute carrier family 39 (metal ion transporter), m...
SLC39A10              0.128   solute carrier family 39 (zinc transporter), member...
SLC39A10              0.128   solute carrier family 39 (zinc transporter), member ...
SLC39A6               0.123   solute carrier family 39 (zinc transporter), member...
SLC39A7               0.068   solute carrier family 39, member 7 
SLC39A7               0.068   solute carrier family 39, member 7 
SLC39A13              0.056   solute carrier family 39 (zinc transporter), member ...
SLC39A13              0.054   solute carrier family 39 (zinc transporter), member...
SLC39A11              0.024   solute carrier family 39, member 11 isoform 1 [Homo...
SLC39A11              0.024   solute carrier family 39, member 11 isoform 2 [Homo...
SLC39A2               0.023   solute carrier family 39 (zinc transporter), member...
SLC39A1               0.012   solute carrier family 39 (zinc transporter), member ...
SLC39A9               0.009   solute carrier family 39 (zinc transporter), member ...
LOC100130667          0.007   PREDICTED: hypothetical protein 
LOC100130667          0.007   PREDICTED: hypothetical protein 
LOC100130667          0.007   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press