Guide to the Human Genome
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Name: SLC39A9 Sequence: fasta or formatted (307aa) NCBI GI: 40254928
Description:

solute carrier family 39 (zinc transporter), member 9

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.1         37           3
 C cysteine            1.0          3           1
 D aspartate           3.3         10           2
 E glutamate           4.9         15           2
 F phenylalanine       3.3         10           1
 G glycine             8.5         26           2
 H histidine           6.8         21           2
 I isoleucine          5.2         16           2
 K lysine              3.3         10           1
 L leucine            13.7         42           2
 M methionine          2.6          8           1
 N asparagine          2.0          6           1
 P proline             2.6          8           1
 Q glutamine           2.0          6           1
 R arginine            2.3          7           1
 S serine              8.8         27           2
 T threonine           4.9         15           3
 V valine             11.4         35           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.6          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 39 (zinc transporter), member ... 
SLC39A10              0.062   solute carrier family 39 (zinc transporter), member...
SLC39A10              0.062   solute carrier family 39 (zinc transporter), member ...
SLC39A12              0.060   solute carrier family 39 (zinc transporter), member...
SLC39A12              0.060   solute carrier family 39 (zinc transporter), member...
SLC39A6               0.053   solute carrier family 39 (zinc transporter), member...
SLC39A7               0.047   solute carrier family 39, member 7 
SLC39A7               0.047   solute carrier family 39, member 7 
SLC39A4               0.046   solute carrier family 39 (zinc transporter), member...
SLC39A4               0.046   solute carrier family 39 (zinc transporter), member...
SLC39A2               0.046   solute carrier family 39 (zinc transporter), member...
SLC39A6               0.037   solute carrier family 39 (zinc transporter), member...
SLC39A5               0.035   solute carrier family 39 (metal ion transporter), m...
SLC39A5               0.035   solute carrier family 39 (metal ion transporter), m...
SLC39A13              0.032   solute carrier family 39 (zinc transporter), member...
SLC39A13              0.030   solute carrier family 39 (zinc transporter), member ...
SLC39A1               0.026   solute carrier family 39 (zinc transporter), member ...
SLC39A14              0.018   solute carrier family 39 (zinc transporter), member...
SLC30A7               0.016   zinc transporter like 2 
SLC30A7               0.016   zinc transporter like 2 
SLC39A8               0.014   solute carrier family 39 (zinc transporter), member ...
SLC39A8               0.014   solute carrier family 39 (zinc transporter), member...
SLC39A8               0.014   solute carrier family 39 (zinc transporter), member...
SLC39A8               0.014   solute carrier family 39 (zinc transporter), member...
LOC100291934          0.009   PREDICTED: similar to cytochrome c oxidase subunit ...
LOC100291321          0.009   PREDICTED: hypothetical protein XP_002347169 
LOC100287996          0.009   PREDICTED: hypothetical protein XP_002343062 
SLC39A3               0.007   solute carrier family 39 (zinc transporter), member ...
FZD10                 0.007   frizzled 10 
ZNF614                0.005   zinc finger protein 614 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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