Guide to the Human Genome
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Name: SLC39A4 Sequence: fasta or formatted (647aa) NCBI GI: 115430255
Description:

solute carrier family 39 (zinc transporter), member 4 isoform 2

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [622aa] solute carrier family 39 (zinc transporter), member 4 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.1         78           3
 C cysteine            2.3         15           1
 D aspartate           3.9         25           2
 E glutamate           5.4         35           2
 F phenylalanine       2.8         18           2
 G glycine             8.7         56           2
 H histidine           3.9         25           1
 I isoleucine          1.1          7           1
 K lysine              1.1          7           1
 L leucine            18.9        122           4
 M methionine          1.4          9           1
 N asparagine          1.5         10           1
 P proline             6.3         41           2
 Q glutamine           3.7         24           3
 R arginine            4.0         26           2
 S serine              9.0         58           3
 T threonine           4.3         28           1
 V valine              6.5         42           2
 W tryptophan          1.4          9           1
 Y tyrosine            1.9         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 39 (zinc transporter), member... 
SLC39A4               0.907   solute carrier family 39 (zinc transporter), member...
SLC39A12              0.210   solute carrier family 39 (zinc transporter), member...
SLC39A12              0.198   solute carrier family 39 (zinc transporter), member...
SLC39A14              0.142   solute carrier family 39 (zinc transporter), member...
SLC39A5               0.139   solute carrier family 39 (metal ion transporter), m...
SLC39A5               0.139   solute carrier family 39 (metal ion transporter), m...
SLC39A14              0.136   solute carrier family 39 (zinc transporter), member...
SLC39A14              0.136   solute carrier family 39 (zinc transporter), member...
SLC39A8               0.127   solute carrier family 39 (zinc transporter), member ...
SLC39A8               0.127   solute carrier family 39 (zinc transporter), member...
SLC39A8               0.126   solute carrier family 39 (zinc transporter), member...
SLC39A14              0.120   solute carrier family 39 (zinc transporter), member...
SLC39A8               0.115   solute carrier family 39 (zinc transporter), member...
SLC39A10              0.108   solute carrier family 39 (zinc transporter), member...
SLC39A10              0.108   solute carrier family 39 (zinc transporter), member ...
SLC39A6               0.102   solute carrier family 39 (zinc transporter), member...
SLC39A7               0.096   solute carrier family 39, member 7 
SLC39A7               0.096   solute carrier family 39, member 7 
SLC39A6               0.083   solute carrier family 39 (zinc transporter), member...
SLC39A13              0.072   solute carrier family 39 (zinc transporter), member ...
SLC39A13              0.071   solute carrier family 39 (zinc transporter), member...
SLC39A9               0.021   solute carrier family 39 (zinc transporter), member ...
SLC39A11              0.020   solute carrier family 39, member 11 isoform 1 [Homo...
SLC39A11              0.020   solute carrier family 39, member 11 isoform 2 [Homo...
SLC39A2               0.016   solute carrier family 39 (zinc transporter), member...
WNK4                  0.006   WNK lysine deficient protein kinase 4 
LOC100289284          0.006   PREDICTED: hypothetical protein XP_002342335 
SLC36A1               0.006   solute carrier family 36 member 1 
TRIM56                0.005   tripartite motif-containing 56 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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