Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 153251796
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|153251796 hypothetical protein LOC55199 isoform 1 [Homo
sapiens]
(165 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|153251796 hypothetical protein LOC55199 isoform 1 [Homo sapiens] 343 3e-95
gi|153251811 hypothetical protein LOC55199 isoform 3 [Homo sapiens] 265 1e-71
gi|24211015 hypothetical protein LOC55199 isoform 2 [Homo sapiens] 259 7e-70
gi|42476337 hypothetical protein LOC196483 isoform 1 [Homo sapiens] 144 3e-35
gi|212549593 hypothetical protein LOC653333 [Homo sapiens] 143 8e-35
gi|239754822 PREDICTED: hypothetical protein LOC653333 [Homo sap... 137 4e-33
gi|42475946 hypothetical protein LOC196483 isoform 2 [Homo sapiens] 95 3e-20
gi|134133220 hypothetical protein LOC85002 [Homo sapiens] 94 7e-20
gi|239758137 PREDICTED: hypothetical protein [Homo sapiens] 56 1e-08
gi|169217659 PREDICTED: similar to ectonucleotide pyrophosphatas... 56 2e-08
gi|169167316 PREDICTED: similar to ectonucleotide pyrophosphatas... 56 2e-08
gi|170932550 FLT3-interacting zinc finger 1 [Homo sapiens] 32 0.25
gi|6912650 semaphorin 3E [Homo sapiens] 31 0.56
gi|21717816 solute carrier family 15, member 4 [Homo sapiens] 30 0.95
gi|5454048 semaphorin 3C [Homo sapiens] 30 0.95
gi|37674210 slingshot 2 [Homo sapiens] 30 1.2
gi|60593040 keratin associated protein 5-10 [Homo sapiens] 29 2.1
gi|5174673 semaphorin 3A precursor [Homo sapiens] 28 2.8
gi|209364594 acyl-Coenzyme A binding domain containing 4 isoform... 28 2.8
gi|209364589 acyl-Coenzyme A binding domain containing 4 isoform... 28 2.8
gi|239757095 PREDICTED: similar to hCG2005276 [Homo sapiens] 28 3.6
gi|239751601 PREDICTED: hypothetical protein XP_002347933 [Homo ... 28 3.6
gi|239746116 PREDICTED: hypothetical protein XP_002344200 [Homo ... 28 3.6
gi|20357568 aminoadipate-semialdehyde dehydrogenase-phosphopante... 28 3.6
gi|60593038 keratin associated protein 5-4 [Homo sapiens] 28 3.6
gi|186928850 mitochondrial ribosomal protein S27 [Homo sapiens] 28 4.7
gi|9910362 semaphorin sem2 [Homo sapiens] 27 6.2
gi|157671931 solute carrier family 5 (sodium/glucose cotransport... 27 6.2
gi|4503493 early growth response 1 [Homo sapiens] 27 8.0
gi|40255272 xin actin-binding repeat containing 1 [Homo sapiens] 27 8.0
>gi|153251796 hypothetical protein LOC55199 isoform 1 [Homo sapiens]
Length = 165
Score = 343 bits (881), Expect = 3e-95
Identities = 165/165 (100%), Positives = 165/165 (100%)
Query: 1 MAPEENAGSELLLQSFKRRFLAARALRSFRWQSLEAKLRDSSDSELLRDILQKHEAVHTE 60
MAPEENAGSELLLQSFKRRFLAARALRSFRWQSLEAKLRDSSDSELLRDILQKHEAVHTE
Sbjct: 1 MAPEENAGSELLLQSFKRRFLAARALRSFRWQSLEAKLRDSSDSELLRDILQKHEAVHTE 60
Query: 61 PLDELYEVLVETLMAKESTQGHRSYLLTCCIAQKPSCRWSGSCGGWLPAGSTSGLLNSTW 120
PLDELYEVLVETLMAKESTQGHRSYLLTCCIAQKPSCRWSGSCGGWLPAGSTSGLLNSTW
Sbjct: 61 PLDELYEVLVETLMAKESTQGHRSYLLTCCIAQKPSCRWSGSCGGWLPAGSTSGLLNSTW 120
Query: 121 PLPSATQRCASCSPPSYAGLGSDGKRKLIMTRNCFPTESTWRWQS 165
PLPSATQRCASCSPPSYAGLGSDGKRKLIMTRNCFPTESTWRWQS
Sbjct: 121 PLPSATQRCASCSPPSYAGLGSDGKRKLIMTRNCFPTESTWRWQS 165
>gi|153251811 hypothetical protein LOC55199 isoform 3 [Homo sapiens]
Length = 158
Score = 265 bits (677), Expect = 1e-71
Identities = 135/168 (80%), Positives = 138/168 (82%), Gaps = 13/168 (7%)
Query: 1 MAPEENAGSELLLQSFKRRFLAARALRSFRWQSLEAKLRDSSDSELLRDILQK---HEAV 57
MAPEENAGSELLLQSFKRRFLAARALRSFRWQSLEAKLRDSSDSELLRDILQK H
Sbjct: 1 MAPEENAGSELLLQSFKRRFLAARALRSFRWQSLEAKLRDSSDSELLRDILQKTVKHPVC 60
Query: 58 HTEPLDELYEVLVETLMAKESTQGHRSYLLTCCIAQKPSCRWSGSCGGWLPAGSTSGLLN 117
P Y + + K+ TCCIAQKPSCRWSGSCGGWLPAGSTSGLLN
Sbjct: 61 VKHPPSVKYARCFLSELIKK----------TCCIAQKPSCRWSGSCGGWLPAGSTSGLLN 110
Query: 118 STWPLPSATQRCASCSPPSYAGLGSDGKRKLIMTRNCFPTESTWRWQS 165
STWPLPSATQRCASCSPPSYAGLGSDGKRKLIMTRNCFPTESTWRWQS
Sbjct: 111 STWPLPSATQRCASCSPPSYAGLGSDGKRKLIMTRNCFPTESTWRWQS 158
>gi|24211015 hypothetical protein LOC55199 isoform 2 [Homo sapiens]
Length = 131
Score = 259 bits (662), Expect = 7e-70
Identities = 131/165 (79%), Positives = 131/165 (79%), Gaps = 34/165 (20%)
Query: 1 MAPEENAGSELLLQSFKRRFLAARALRSFRWQSLEAKLRDSSDSELLRDILQKHEAVHTE 60
MAPEENAGSELLLQSFKRRFLAARALRSFRWQSLEAKLRDSSDSELLRDILQK
Sbjct: 1 MAPEENAGSELLLQSFKRRFLAARALRSFRWQSLEAKLRDSSDSELLRDILQK------- 53
Query: 61 PLDELYEVLVETLMAKESTQGHRSYLLTCCIAQKPSCRWSGSCGGWLPAGSTSGLLNSTW 120
TCCIAQKPSCRWSGSCGGWLPAGSTSGLLNSTW
Sbjct: 54 ---------------------------TCCIAQKPSCRWSGSCGGWLPAGSTSGLLNSTW 86
Query: 121 PLPSATQRCASCSPPSYAGLGSDGKRKLIMTRNCFPTESTWRWQS 165
PLPSATQRCASCSPPSYAGLGSDGKRKLIMTRNCFPTESTWRWQS
Sbjct: 87 PLPSATQRCASCSPPSYAGLGSDGKRKLIMTRNCFPTESTWRWQS 131
>gi|42476337 hypothetical protein LOC196483 isoform 1 [Homo sapiens]
Length = 330
Score = 144 bits (363), Expect = 3e-35
Identities = 80/114 (70%), Positives = 83/114 (72%), Gaps = 27/114 (23%)
Query: 1 MAPEENAGSELLLQSFKRRFLAARALRSFRWQSLEAKLRDSSDSELLRDIL--------- 51
MAPEENAG+ELLLQSF+RRFLAAR LRSF WQSLEAKLRDSSDSELLRDIL
Sbjct: 1 MAPEENAGTELLLQSFERRFLAARTLRSFPWQSLEAKLRDSSDSELLRDILHKTVKHPVC 60
Query: 52 ------------------QKHEAVHTEPLDELYEVLVETLMAKESTQGHRSYLL 87
+KHEAVHTEPLDELYE L ETLMAKESTQGHRSYLL
Sbjct: 61 VKHPPSVKYARCFLSELIKKHEAVHTEPLDELYEALAETLMAKESTQGHRSYLL 114
>gi|212549593 hypothetical protein LOC653333 [Homo sapiens]
Length = 330
Score = 143 bits (360), Expect = 8e-35
Identities = 79/115 (68%), Positives = 83/115 (72%), Gaps = 27/115 (23%)
Query: 1 MAPEENAGSELLLQSFKRRFLAARALRSFRWQSLEAKLRDSSDSELLRDILQ-------- 52
MAPEENAG+ELLLQ F+RRFLA R LRSF WQSLEAKLRDSSDSELLRDILQ
Sbjct: 1 MAPEENAGTELLLQGFERRFLAVRTLRSFPWQSLEAKLRDSSDSELLRDILQKTVRHPVC 60
Query: 53 -------------------KHEAVHTEPLDELYEVLVETLMAKESTQGHRSYLLT 88
KHEAVHTEPLD+LYEVL ETLMAKESTQGHRSYLL+
Sbjct: 61 VKHPPSVKYAWCFLSELIKKHEAVHTEPLDKLYEVLAETLMAKESTQGHRSYLLS 115
>gi|239754822 PREDICTED: hypothetical protein LOC653333 [Homo
sapiens]
Length = 329
Score = 137 bits (345), Expect = 4e-33
Identities = 76/114 (66%), Positives = 80/114 (70%), Gaps = 27/114 (23%)
Query: 1 MAPEENAGSELLLQSFKRRFLAARALRSFRWQSLEAKLRDSSDSELLRDILQ-------- 52
M PEENAG++LLLQSF+ RFL AR LRSF WQSLEAKLRDSSDSELLRDILQ
Sbjct: 1 MTPEENAGTKLLLQSFESRFLVARTLRSFPWQSLEAKLRDSSDSELLRDILQKTVRHPVC 60
Query: 53 -------------------KHEAVHTEPLDELYEVLVETLMAKESTQGHRSYLL 87
KHEAVHTEPLDELYE L ETLMAKESTQGH+SYLL
Sbjct: 61 VKPPPSVKYARCFLSELIKKHEAVHTEPLDELYEALAETLMAKESTQGHQSYLL 114
>gi|42475946 hypothetical protein LOC196483 isoform 2 [Homo
sapiens]
Length = 296
Score = 94.7 bits (234), Expect = 3e-20
Identities = 48/53 (90%), Positives = 50/53 (94%)
Query: 1 MAPEENAGSELLLQSFKRRFLAARALRSFRWQSLEAKLRDSSDSELLRDILQK 53
MAPEENAG+ELLLQSF+RRFLAAR LRSF WQSLEAKLRDSSDSELLRDIL K
Sbjct: 1 MAPEENAGTELLLQSFERRFLAARTLRSFPWQSLEAKLRDSSDSELLRDILHK 53
>gi|134133220 hypothetical protein LOC85002 [Homo sapiens]
Length = 296
Score = 93.6 bits (231), Expect = 7e-20
Identities = 47/53 (88%), Positives = 49/53 (92%)
Query: 1 MAPEENAGSELLLQSFKRRFLAARALRSFRWQSLEAKLRDSSDSELLRDILQK 53
MAPEENAG+ELLLQ F+RRFLA R LRSF WQSLEAKLRDSSDSELLRDILQK
Sbjct: 1 MAPEENAGTELLLQGFERRFLAVRTLRSFPWQSLEAKLRDSSDSELLRDILQK 53
>gi|239758137 PREDICTED: hypothetical protein [Homo sapiens]
Length = 89
Score = 56.2 bits (134), Expect = 1e-08
Identities = 26/32 (81%), Positives = 28/32 (87%)
Query: 1 MAPEENAGSELLLQSFKRRFLAARALRSFRWQ 32
MAPEENAG+ELLLQ F+RRFLA R LRSF WQ
Sbjct: 25 MAPEENAGTELLLQGFERRFLAVRTLRSFPWQ 56
>gi|169217659 PREDICTED: similar to ectonucleotide
pyrophosphatase/phosphodiesterase 5 [Homo sapiens]
Length = 542
Score = 55.8 bits (133), Expect = 2e-08
Identities = 26/32 (81%), Positives = 29/32 (90%)
Query: 1 MAPEENAGSELLLQSFKRRFLAARALRSFRWQ 32
MAPEENAG+EL LQ F+RRFLAAR+LRSF WQ
Sbjct: 416 MAPEENAGTELWLQGFERRFLAARSLRSFPWQ 447
>gi|169167316 PREDICTED: similar to ectonucleotide
pyrophosphatase/phosphodiesterase 5 [Homo sapiens]
Length = 542
Score = 55.8 bits (133), Expect = 2e-08
Identities = 26/32 (81%), Positives = 29/32 (90%)
Query: 1 MAPEENAGSELLLQSFKRRFLAARALRSFRWQ 32
MAPEENAG+EL LQ F+RRFLAAR+LRSF WQ
Sbjct: 416 MAPEENAGTELWLQGFERRFLAARSLRSFPWQ 447
>gi|170932550 FLT3-interacting zinc finger 1 [Homo sapiens]
Length = 496
Score = 32.0 bits (71), Expect = 0.25
Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 12/106 (11%)
Query: 34 LEAKLRDSSDSELLRDILQKHEAVHTEPLDELYEVLVETLMAKESTQGHRSYLLTCCIAQ 93
L +LR SS S L R + ++H V PL + L A S + C +
Sbjct: 110 LVCELRFSSRSSLGRHLKRQHRGVLPSPLQP--GPGLPALSAPCS--------VCCNVGP 159
Query: 94 KPSCRWSGSCGGWLPAGSTSGLLNSTWPLPSATQRCASCSPPSYAG 139
C SG+ GG P G+ +GL +W L A A+ PP G
Sbjct: 160 CSVCGGSGAGGGEGPEGAGAGL--GSWGLAEAAAAAAASLPPFACG 203
>gi|6912650 semaphorin 3E [Homo sapiens]
Length = 775
Score = 30.8 bits (68), Expect = 0.56
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 89 CCIAQKPSCRWSG-SCGGWLPAGS 111
CC+A+ P C W G SC + P G+
Sbjct: 529 CCLARDPYCAWDGISCSRYYPTGT 552
>gi|21717816 solute carrier family 15, member 4 [Homo sapiens]
Length = 577
Score = 30.0 bits (66), Expect = 0.95
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 115 LLNSTWPLPSATQRCASCSPPSYAGL 140
LLN T P P A RC CSP ++AGL
Sbjct: 138 LLNCTAPGPDAAARC--CSPATFAGL 161
>gi|5454048 semaphorin 3C [Homo sapiens]
Length = 751
Score = 30.0 bits (66), Expect = 0.95
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 89 CCIAQKPSCRWSG-SCGGWLPAG 110
CC+A+ P C W G SC + P G
Sbjct: 524 CCLARDPYCAWDGHSCSRFYPTG 546
>gi|37674210 slingshot 2 [Homo sapiens]
Length = 1423
Score = 29.6 bits (65), Expect = 1.2
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 6/102 (5%)
Query: 2 APEENAGSELLLQSFKRRFLAARALRSFRWQSLEAKLRDSSDSELLRDILQKHEAVHTEP 61
A E ++ +QS ++ + + + +E+ + +L DIL HT
Sbjct: 728 AISELVSPDIFMQSHSENAISVKEIVT----EIESISQGVGQIQLKGDILPN--PCHTPK 781
Query: 62 LDELYEVLVETLMAKESTQGHRSYLLTCCIAQKPSCRWSGSC 103
+ ++E+L+E E+ GH C AQ + SG C
Sbjct: 782 KNSIHELLLERAQTPENKPGHMEQDEDSCTAQPELAKDSGMC 823
>gi|60593040 keratin associated protein 5-10 [Homo sapiens]
Length = 202
Score = 28.9 bits (63), Expect = 2.1
Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 89 CCIAQKPSCRWSGSCGGWL-PAGSTSGLLNSTWPLPSATQRCASCSPPSYAGLGSDGKRK 147
CC SC GSCGG GS G + C SC S G GS G K
Sbjct: 53 CCCVPACSCSSCGSCGGSKGDCGSCGGSKGGCGSCGGSKGGCGSCG-GSKGGCGSCGGSK 111
>gi|5174673 semaphorin 3A precursor [Homo sapiens]
Length = 771
Score = 28.5 bits (62), Expect = 2.8
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 89 CCIAQKPSCRWSGS-CGGWLP 108
CC+A+ P C W GS C + P
Sbjct: 527 CCLARDPYCAWDGSACSRYFP 547
>gi|209364594 acyl-Coenzyme A binding domain containing 4 isoform 1
[Homo sapiens]
Length = 341
Score = 28.5 bits (62), Expect = 2.8
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 81 GHRSYLLTCCIAQKPSCRWSGSCGGWLPAGSTSGLLNSTWPLPSATQRC--ASCSPPSYA 138
G + C + CR +C G L G + G + PL S RC +SC P S +
Sbjct: 248 GQFEHYRRACRRCRRGCRAWRACPGPLSRGRSPGPVLGHGPLGSRGPRCSSSSCGPSSSS 307
Query: 139 G 139
G
Sbjct: 308 G 308
>gi|209364589 acyl-Coenzyme A binding domain containing 4 isoform 1
[Homo sapiens]
Length = 341
Score = 28.5 bits (62), Expect = 2.8
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 81 GHRSYLLTCCIAQKPSCRWSGSCGGWLPAGSTSGLLNSTWPLPSATQRC--ASCSPPSYA 138
G + C + CR +C G L G + G + PL S RC +SC P S +
Sbjct: 248 GQFEHYRRACRRCRRGCRAWRACPGPLSRGRSPGPVLGHGPLGSRGPRCSSSSCGPSSSS 307
Query: 139 G 139
G
Sbjct: 308 G 308
>gi|239757095 PREDICTED: similar to hCG2005276 [Homo sapiens]
Length = 261
Score = 28.1 bits (61), Expect = 3.6
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 74 MAKESTQGHRSYLLTCCIAQKPSCR-------WS-GSCGGWLPAGSTSGLLNSTWPLPSA 125
+A EST+G R +L TC R W+ S W P G++ L S W L
Sbjct: 130 LAAESTRGRRLWLGTCPRQGTGGLRSRSLRRPWARSSLESWAPRGASGSLTLSQWLLAPL 189
Query: 126 TQRCASCSPPSYAGLGSDGKRK 147
AS P S+ + +R+
Sbjct: 190 G---ASAPPQSWVPVSPLNRRE 208
>gi|239751601 PREDICTED: hypothetical protein XP_002347933 [Homo
sapiens]
Length = 282
Score = 28.1 bits (61), Expect = 3.6
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 74 MAKESTQGHRSYLLTCCIAQKPSCR-------WS-GSCGGWLPAGSTSGLLNSTWPLPSA 125
+A EST+G R +L TC R W+ S W P G++ L S W L
Sbjct: 151 LAAESTRGRRLWLGTCPRQGTGGLRSRSLRRPWARSSLESWAPRGASGSLTLSQWLLAPL 210
Query: 126 TQRCASCSPPSYAGLGSDGKRK 147
AS P S+ + +R+
Sbjct: 211 G---ASAPPQSWVPVSPLNRRE 229
>gi|239746116 PREDICTED: hypothetical protein XP_002344200 [Homo
sapiens]
Length = 282
Score = 28.1 bits (61), Expect = 3.6
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 74 MAKESTQGHRSYLLTCCIAQKPSCR-------WS-GSCGGWLPAGSTSGLLNSTWPLPSA 125
+A EST+G R +L TC R W+ S W P G++ L S W L
Sbjct: 151 LAAESTRGRRLWLGTCPRQGTGGLRSRSLRRPWARSSLESWAPRGASGSLTLSQWLLAPL 210
Query: 126 TQRCASCSPPSYAGLGSDGKRK 147
AS P S+ + +R+
Sbjct: 211 G---ASAPPQSWVPVSPLNRRE 229
>gi|20357568 aminoadipate-semialdehyde
dehydrogenase-phosphopantetheinyl transferase [Homo
sapiens]
Length = 309
Score = 28.1 bits (61), Expect = 3.6
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 89 CCIAQKPSCRWSGSCGGWLPA 109
C + RW+ SCG WLP+
Sbjct: 9 CLVPSMEGVRWAFSCGTWLPS 29
>gi|60593038 keratin associated protein 5-4 [Homo sapiens]
Length = 288
Score = 28.1 bits (61), Expect = 3.6
Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 89 CCIAQKPSCRWSGSCGGWLPA-GSTSGLLNSTWPLPSATQRCASCSPPSYAGLGSDGKRK 147
CC SC GSCGG GS G + C SC S G GS G K
Sbjct: 60 CCCVPACSCSSCGSCGGSKGGYGSCGGSKGGCVSCGGSKGGCGSCG-GSKGGCGSCGGSK 118
>gi|186928850 mitochondrial ribosomal protein S27 [Homo sapiens]
Length = 414
Score = 27.7 bits (60), Expect = 4.7
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 40 DSSDSELLRDILQKHEAVHTEPLDELYEVLVETLMAKESTQGHRSYLLTCCIAQKPSCRW 99
D+ LL D K E + + L ++EV+++ STQ Y+L C+A+K W
Sbjct: 140 DNFTFNLLMDSFIKKEN-YKDALSVVFEVMMQEAFEVPSTQLLSLYVLFHCLAKKTDFSW 198
>gi|9910362 semaphorin sem2 [Homo sapiens]
Length = 782
Score = 27.3 bits (59), Expect = 6.2
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 89 CCIAQKPSCRWSG-SCGGWLPA 109
CC+A+ P C W G SC + P+
Sbjct: 532 CCLARDPYCAWDGASCTHYRPS 553
>gi|157671931 solute carrier family 5 (sodium/glucose
cotransporter), member 12 [Homo sapiens]
Length = 618
Score = 27.3 bits (59), Expect = 6.2
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 11/46 (23%)
Query: 95 PSCRWSGSCGG---------WLPAGST--SGLLNSTWPLPSATQRC 129
P W G+ GG W+ G+ + TWPLP +T +C
Sbjct: 431 PFVNWKGALGGLLTGITLSFWVAIGAFIYPAPASKTWPLPLSTDQC 476
>gi|4503493 early growth response 1 [Homo sapiens]
Length = 543
Score = 26.9 bits (58), Expect = 8.0
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 117 NSTWPLPSATQRCASCSPPSYAGLGSDGKRKLIMTRNCFPTEST 160
+S+ P P+A+ AS SPP + S+ + FPT +T
Sbjct: 171 SSSAPSPAASSASASQSPPLSCAVPSNDSSPIYSAAPTFPTPNT 214
>gi|40255272 xin actin-binding repeat containing 1 [Homo sapiens]
Length = 1843
Score = 26.9 bits (58), Expect = 8.0
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 14/68 (20%)
Query: 18 RRFLAARALRSFRW----QSLEAKLRDSSDSELLRDILQKHEA----------VHTEPLD 63
R + + A+RS RW + L+A +D S ++R I + A T+PLD
Sbjct: 258 REEIQSNAVRSARWLFETRPLDAINQDPSQVRVIRGISLEEGARPDVSATRWIFETQPLD 317
Query: 64 ELYEVLVE 71
+ E+LV+
Sbjct: 318 AIREILVD 325
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.129 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,860,331
Number of Sequences: 37866
Number of extensions: 310701
Number of successful extensions: 1008
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 986
Number of HSP's gapped (non-prelim): 34
length of query: 165
length of database: 18,247,518
effective HSP length: 94
effective length of query: 71
effective length of database: 14,688,114
effective search space: 1042856094
effective search space used: 1042856094
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.