Guide to the Human Genome
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Name: SEMA3E Sequence: fasta or formatted (775aa) NCBI GI: 6912650
Description:

semaphorin 3E

Referenced in:

Semaphorins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         45           2
 C cysteine            2.7         21           2
 D aspartate           6.2         48           2
 E glutamate           7.1         55           3
 F phenylalanine       4.6         36           3
 G glycine             6.5         50           2
 H histidine           4.4         34           2
 I isoleucine          5.0         39           2
 K lysine              6.2         48           2
 L leucine             8.6         67           3
 M methionine          2.2         17           1
 N asparagine          3.2         25           2
 P proline             4.4         34           1
 Q glutamine           3.0         23           2
 R arginine            7.0         54           2
 S serine              6.3         49           3
 T threonine           4.9         38           2
 V valine              5.8         45           2
 W tryptophan          1.4         11           1
 Y tyrosine            4.6         36           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   semaphorin 3E 
SEMA3A                0.479   semaphorin 3A precursor 
SEMA3G                0.469   semaphorin sem2 
SEMA3D                0.436   semaphorin 3D 
SEMA3B                0.404   semaphorin 3B isoform 1 precursor 
SEMA3F                0.401   semaphorin 3F 
SEMA3B                0.401   semaphorin 3B isoform 2 precursor 
SEMA3C                0.392   semaphorin 3C 
SEMA4D                0.187   semaphorin 4D isoform 1 
SEMA4C                0.182   semaphorin 4C 
SEMA4D                0.179   semaphorin 4D isoform 2 
SEMA6D                0.172   semaphorin 6D isoform 2 precursor 
SEMA6D                0.172   semaphorin 6D isoform 5 precursor 
SEMA6D                0.172   semaphorin 6D isoform 4 precursor 
SEMA6D                0.172   semaphorin 6D isoform 3 precursor 
SEMA6D                0.171   semaphorin 6D isoform 1 precursor 
SEMA4B                0.167   semaphorin 4B precursor 
SEMA4B                0.167   semaphorin 4B precursor 
SEMA4G                0.162   semaphorin 4G 
SEMA6A                0.158   sema domain, transmembrane domain (TM), and cytoplas...
SEMA6D                0.148   semaphorin 6D isoform 6 precursor 
SEMA4F                0.147   semaphorin W 
SEMA6C                0.147   semaphorin Y 
SEMA6B                0.145   semaphorin 6B precursor 
SEMA4A                0.143   semaphorin B 
SEMA5A                0.142   semaphorin 5A 
SEMA5B                0.142   semaphorin 5B isoform 1 
SEMA7A                0.108   semaphorin 7A isoform 1 preproprotein 
SEMA7A                0.106   semaphorin 7A isoform 2 preproprotein 
SEMA7A                0.096   semaphorin 7A isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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